Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007448.1 Hibiscus syriacus cultivar Beakdansim tig00020368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64691

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3400--3447
21
2.3
21
78
7
53
33
20
6
39
1.78
3587--3655
30
2.3
29
76
14
70
30
18
0
50
1.47
6370--6447
29
2.7
29
76
6
77
44
2
15
37
1.60
9192--9287
17
5.5
17
81
6
104
35
9
11
43
1.73
9211--9280
19
3.8
19
87
5
92
31
8
14
45
1.75
9192--9280
37
2.5
36
87
7
121
33
8
12
44
1.73
11661--11721
30
2.0
31
81
12
74
47
9
1
40
1.46
18363--18420
4
14.5
4
96
0
71
50
8
0
41
1.33
19414--19471
20
2.9
20
94
0
98
25
25
10
37
1.88
20216--20267
22
2.3
23
83
12
63
26
17
13
42
1.86
20473--20510
18
2.1
18
100
0
76
28
44
5
21
1.73
20787--20949
87
1.9
87
94
0
290
41
9
15
33
1.80
24455--24701
120
2.1
120
93
0
422
37
14
14
33
1.87
24575--25344
182
4.2
183
96
1
1386
33
16
14
35
1.90
24575--25344
365
2.1
364
95
1
1382
33
16
14
35
1.90
26554--26617
12
5.3
12
82
0
65
20
31
9
39
1.84
28108--28847
200
3.7
200
95
0
1309
30
18
14
36
1.91
29069--29129
19
3.3
18
88
2
59
52
11
1
34
1.47
29081--29129
19
2.6
19
96
0
89
55
10
2
32
1.45
31760--31806
20
2.4
19
79
10
58
19
14
10
55
1.68
31727--32199
181
2.6
182
89
1
716
26
16
14
43
1.86
33166--33195
5
6.0
5
100
0
60
80
0
20
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33875--34095
83
2.7
82
80
6
232
28
19
17
35
1.94
33875--34099
41
5.4
41
82
4
227
27
19
18
34
1.95
36461--36654
42
4.6
43
80
5
202
22
26
19
31
1.97
36730--36785
21
2.6
22
85
2
87
46
17
17
17
1.85
40487--40533
20
2.3
21
85
10
71
27
17
17
38
1.91
42678--42722
17
2.5
18
89
7
65
64
4
0
31
1.13
44011--44058
18
2.6
19
90
6
73
54
2
8
35
1.42
44352--44398
13
3.6
13
82
0
67
46
23
0
29
1.52
44352--44410
26
2.3
26
100
0
118
47
23
0
28
1.52
44364--44410
13
3.6
13
82
0
67
48
23
0
27
1.51
44352--44420
26
2.7
26
93
0
102
44
21
4
28
1.71
45924--45961
2
19.0
2
100
0
76
50
0
0
50
1.00
46829--46935
24
4.5
24
71
0
88
48
16
12
22
1.79
46829--46937
48
2.3
48
78
0
128
48
16
12
22
1.80
49421--49453
7
4.6
7
92
7
57
24
27
33
15
1.95
49412--49452
15
2.6
15
92
7
64
24
29
34
12
1.91
50391--50420
13
2.3
13
94
0
51
36
26
10
26
1.88
51739--51781
20
2.0
20
86
8
59
55
0
2
41
1.12
51739--51780
14
3.2
13
83
12
50
57
0
2
40
1.12
51898--51962
33
2.0
33
96
0
121
46
15
12
26
1.81
54970--55082
51
2.3
49
86
7
149
36
7
7
48
1.60
59219--59350
55
2.4
55
93
2
221
51
12
14
21
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60275--60315
17
2.4
17
81
18
50
65
0
7
26
1.18
60435--60507
22
3.2
22
81
9
85
39
1
8
50
1.41
62452--62482
16
1.9
16
93
0
53
58
12
12
16
1.64
62820--62886
25
2.6
26
77
15
68
38
7
1
52
1.39
62897--62943
24
2.0
24
87
8
69
57
0
2
40
1.11

Tables:   1

The End!