genome.fa.s7449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007449.1 Hibiscus syriacus cultivar Beakdansim tig00020386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96627

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3577--3683	19	5.9	19	82	17	138	21	31	17	28	1.96
3582--3683	37	2.9	34	89	8	143	20	32	17	29	1.96
9557--9625	20	3.2	20	72	20	59	30	21	20	27	1.98
9557--9653	44	2.2	44	83	10	119	28	23	18	28	1.98
11904--11937	16	2.1	16	94	0	59	38	0	44	17	1.49
12288--12432	65	2.2	64	82	3	166	31	23	17	28	1.97
14259--14326	17	4.1	16	83	9	75	58	2	0	38	1.13
15365--15457	47	2.0	47	93	0	159	51	5	5	37	1.48
15900--15933	4	8.5	4	100	0	68	23	0	0	76	0.79
16242--16268	5	5.4	5	100	0	54	0	18	0	81	0.69
20184--20223	21	1.9	21	94	0	71	27	27	22	22	1.99
30768--30940	86	2.0	85	94	1	301	47	13	12	26	1.78
37724--37766	8	5.2	8	80	5	50	58	0	2	39	1.11
37715--37765	25	2.0	26	92	3	86	56	0	5	37	1.23
39882--39944	20	3.2	20	76	10	67	53	1	4	39	1.31
39978--40058	24	3.2	24	74	19	69	48	0	1	50	1.08
39974--40036	29	2.3	27	78	13	67	50	0	1	47	1.10
40083--40150	23	3.0	23	72	14	68	50	5	1	42	1.35
41461--41506	23	2.0	22	84	12	58	30	6	0	63	1.20
41752--41813	19	3.2	18	77	11	61	53	9	4	32	1.55
42534--42578	18	2.7	16	80	10	54	44	0	0	55	0.99
43245--43361	54	2.2	54	98	1	227	29	7	9	52	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43832--43872	8	4.7	9	80	17	50	73	7	0	19	1.07
45934--46176	122	2.0	122	96	0	450	34	18	13	33	1.90
48877--48943	31	2.2	31	83	0	80	41	11	20	25	1.87
49259--49308	23	2.2	23	85	0	64	40	10	8	42	1.68
51577--51622	18	2.6	18	92	0	74	17	50	19	13	1.78
51599--51643	13	3.3	13	87	6	54	15	40	22	22	1.91
51604--51645	15	2.9	15	89	6	61	14	35	23	26	1.93
51616--51663	10	5.6	8	83	14	53	14	33	25	27	1.94
52930--52964	18	1.9	18	88	0	52	54	0	17	28	1.43
54955--55317	182	2.0	181	98	1	701	24	19	20	34	1.96
60471--60532	26	2.4	26	83	5	81	32	24	0	43	1.54
66965--67147	92	2.0	92	95	0	330	39	20	12	27	1.88
70124--70174	22	2.3	22	100	0	102	39	9	13	37	1.78
70545--70647	43	2.4	44	80	7	124	28	13	5	52	1.63
70653--71015	44	8.2	45	74	10	243	23	19	7	49	1.74
84953--85132	95	1.9	94	84	5	238	31	18	16	33	1.93
95947--96460	240	2.1	240	90	1	816	33	21	18	26	1.97
96409--96494	34	2.5	34	92	0	136	37	24	16	22	1.93

Tables:   1

The End!