genome.fa.s7450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007450.1 Hibiscus syriacus cultivar Beakdansim tig00020387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46788

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281--3350	31	2.3	31	82	5	79	30	30	22	17	1.97
7691--7750	16	3.8	16	79	14	70	31	0	3	65	1.09
7683--7750	32	2.2	29	85	12	84	33	0	2	63	1.10
7680--7772	48	2.0	45	81	10	107	34	0	3	62	1.11
9101--9297	24	8.2	24	93	0	313	42	19	13	24	1.87
10065--10121	28	2.0	29	82	3	71	52	15	0	31	1.43
10122--10162	18	2.3	18	87	4	57	19	21	41	17	1.90
10134--10187	18	3.0	18	86	0	81	12	16	50	20	1.78
16419--16543	24	5.2	24	98	0	214	43	16	13	26	1.85
16419--16558	72	1.9	72	88	0	208	45	15	12	25	1.82
17271--17351	29	2.8	29	84	0	108	54	19	1	24	1.52
17425--17477	18	2.9	18	91	0	88	13	18	49	18	1.80
22706--22770	27	2.4	27	89	0	94	53	16	10	18	1.71
24160--24421	87	3.0	86	87	2	346	45	9	10	34	1.72
24797--24875	23	3.4	23	89	0	113	37	13	7	40	1.74
24817--24887	23	3.1	23	89	0	79	39	15	7	38	1.75
24921--24974	23	2.3	23	80	0	63	37	14	5	42	1.69
28682--28724	22	2.0	21	81	4	50	58	6	2	32	1.38
30522--30560	11	3.2	12	80	20	53	48	7	0	43	1.31
30522--30561	14	3.1	14	86	13	59	50	7	0	42	1.30
30522--30564	13	3.4	13	84	15	63	46	6	0	46	1.30
31657--31719	23	2.7	23	92	0	99	38	20	4	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31296--32352	431	2.5	431	96	0	1947	38	12	8	41	1.72
32088--32150	23	2.7	23	90	0	90	38	22	4	34	1.75
32568--32654	39	2.2	39	95	0	156	17	13	20	48	1.81
32927--32963	18	2.1	18	89	0	56	51	10	5	32	1.60
33349--33397	24	2.0	25	88	4	73	46	20	6	26	1.73
33681--33743	23	2.7	23	92	0	99	38	20	4	36	1.74
34087--34152	25	2.6	25	80	0	87	42	13	9	34	1.76
36619--37287	183	3.7	183	94	1	1156	33	17	14	34	1.90
37625--37684	21	2.9	21	92	0	93	48	8	11	31	1.69
37698--37760	23	2.7	23	92	0	99	38	20	4	36	1.74
37776--37817	22	2.0	22	85	4	59	35	11	9	42	1.74
38129--38191	23	2.7	23	92	0	99	38	20	4	36	1.74
38244--38371	32	4.3	32	61	25	82	29	7	7	55	1.55
38242--38416	87	2.0	87	100	0	350	30	10	6	52	1.61
38647--38709	23	2.7	23	92	0	99	38	20	4	36	1.74
37814--38846	518	2.0	516	97	0	1969	38	12	7	42	1.70
40298--40377	9	8.6	9	68	13	54	22	32	6	38	1.79
40301--40389	12	7.4	12	84	0	88	21	32	7	38	1.82
40297--40377	6	13.5	6	80	0	72	23	32	6	38	1.80
40301--40392	18	5.1	18	77	5	78	20	32	7	39	1.81
40319--40388	36	1.9	36	94	0	122	20	31	10	38	1.85
40301--40392	6	15.3	6	78	4	69	20	32	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41832--42590	197	3.9	196	93	3	1295	30	17	15	35	1.91
42709--42757	19	2.6	19	93	0	80	57	10	2	30	1.43
44536--44601	33	2.0	33	87	0	96	24	46	0	28	1.52
44634--44694	21	2.9	21	92	0	95	16	29	11	42	1.83

Tables:   1

The End!