Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007454.1 Hibiscus syriacus cultivar Beakdansim tig00020410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61698
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:4117 original size:14 final size:15
Alignment explanation
Indices: 4093--4133 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
4083 ACTGGAACTG
4093 GAAAATGAATTACTA
1 GAAAATGAATTACTA
*
4108 G-AATTGAATT-CTA
1 GAAAATGAATTACTA
4121 GAAAATGAATTAC
1 GAAAATGAATTAC
4134 ATTTCTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 4 0.18
14 16 0.73
15 2 0.09
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29
Consensus pattern (15 bp):
GAAAATGAATTACTA
Found at i:4475 original size:24 final size:24
Alignment explanation
Indices: 4420--4495 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 24
4410 TTTAGTGAAA
4420 TAAAATATTATAATTATATTATTATTTAT
1 TAAAATA--ATAATT-TATTA-TATTT-T
*
4449 TAAAGTAATAATTTATTATATTTT
1 TAAAATAATAATTTATTATATTTT
* *
4473 TAAAATATTAA-TTAGTATATTTT
1 TAAAATAATAATTTATTATATTTT
4496 AAATATCTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
23 11 0.26
24 10 0.23
25 5 0.12
26 5 0.12
27 6 0.14
29 6 0.14
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (24 bp):
TAAAATAATAATTTATTATATTTT
Found at i:4509 original size:23 final size:22
Alignment explanation
Indices: 4455--4550 Score: 83
Period size: 23 Copynumber: 4.3 Consensus size: 22
4445 TTATTAAAGT
4455 AATA-ATTTATTATAT-TTTTA
1 AATATATTTATTATATATTTTA
*
4475 AA-ATATTAATTAGTATATTTTA
1 AATATATTTATTA-TATATTTTA
* *
4497 AATATCTTTATTAAAATATTATTA
1 AATATATTTATT-ATATATT-TTA
*
4521 AATATATAATATTAT-TATTATTA
1 AATATAT-TTATTATATATT-TTA
4544 AATATAT
1 AATATAT
4551 AAAAATTATT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
19 1 0.02
20 9 0.15
21 3 0.05
22 7 0.11
23 27 0.44
24 11 0.18
25 4 0.06
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (22 bp):
AATATATTTATTATATATTTTA
Found at i:4551 original size:23 final size:24
Alignment explanation
Indices: 4513--4568 Score: 87
Period size: 23 Copynumber: 2.3 Consensus size: 24
4503 TTTATTAAAA
*
4513 TATTATTAAATATAT-AATATTAT
1 TATTATTAAATATATAAAAATTAT
4536 TATTATTAAATATATAAAAATTAT
1 TATTATTAAATATATAAAAATTAT
4560 TATATATTA
1 TAT-TATTA
4569 TTAAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 15 0.50
24 10 0.33
25 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TATTATTAAATATATAAAAATTAT
Found at i:4691 original size:20 final size:17
Alignment explanation
Indices: 4635--4707 Score: 58
Period size: 19 Copynumber: 4.1 Consensus size: 17
4625 AAATATTCAT
*
4635 TATTTATTATATATATATA
1 TATTTATTA-ATAT-TAAA
* * *
4654 TATTAATAAATAAT-AA
1 TATTTATTAATATTAAA
4670 TATTTGATTAAATGATTAAA
1 TATTT-ATT-AAT-ATTAAA
4690 TATTTATTAATATTAAA
1 TATTTATTAATATTAAA
4707 T
1 T
4708 TAATAAAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 5 0.12
17 10 0.23
18 9 0.21
19 12 0.28
20 7 0.16
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
TATTTATTAATATTAAA
Found at i:5082 original size:2 final size:2
Alignment explanation
Indices: 5075--5156 Score: 164
Period size: 2 Copynumber: 41.0 Consensus size: 2
5065 AATACTTTGA
5075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5117 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5157 CAAAATGCAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 80 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6858 original size:33 final size:35
Alignment explanation
Indices: 6821--6906 Score: 104
Period size: 33 Copynumber: 2.5 Consensus size: 35
6811 TTAGGCCATA
* *
6821 CCACTAGTATTAGAAATATGCT-AGTTAGGTTA-T
1 CCACTAGTATTAGAAATATACTAAATTAGGTTATT
*
6854 CCACTAGTATTTGAAATATACTCAAATTAGGTTATT
1 CCACTAGTATTAGAAATATACT-AAATTAGGTTATT
* *
6890 TCACTAGTATTGGAAAT
1 CCACTAGTATTAGAAAT
6907 GATCATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 20 0.44
35 9 0.20
36 16 0.36
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (35 bp):
CCACTAGTATTAGAAATATACTAAATTAGGTTATT
Found at i:7562 original size:22 final size:23
Alignment explanation
Indices: 7525--7568 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
7515 GTGTGGGGGT
7525 TTTTATTGCATAATAATACATACG
1 TTTTATT-CATAATAATACATACG
*
7549 TTTTATT-ATAATAATGCATA
1 TTTTATTCATAATAATACATA
7569 ATAATGTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (23 bp):
TTTTATTCATAATAATACATACG
Found at i:13775 original size:23 final size:24
Alignment explanation
Indices: 13726--13777 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
13716 CCTAATTTTT
*
13726 ATTTATAAAATTTTAATTCATATA
1 ATTTATAAAATTTTAATTCATAAA
* * *
13750 ATTTAT-ATATTTTATTTTATAAA
1 ATTTATAAAATTTTAATTCATAAA
13773 ATTTA
1 ATTTA
13778 AAACATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTATAAAATTTTAATTCATAAA
Found at i:15627 original size:17 final size:17
Alignment explanation
Indices: 15605--15637 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15595 TTTTATGAGC
*
15605 TAAAAATATTATTATTG
1 TAAAAATATAATTATTG
15622 TAAAAATATAATTATT
1 TAAAAATATAATTATT
15638 TAATATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TAAAAATATAATTATTG
Found at i:15741 original size:17 final size:17
Alignment explanation
Indices: 15719--15753 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15709 CGAGATCATA
15719 ATATTAT-TTTTCATATT
1 ATATTATATTTT-ATATT
15736 ATATTATATTTTATATT
1 ATATTATATTTTATATT
15753 A
1 A
15754 ATAAATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
ATATTATATTTTATATT
Found at i:21307 original size:2 final size:2
Alignment explanation
Indices: 21300--21325 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21290 AATAGAAGTA
21300 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
21326 GTTTATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22169 original size:23 final size:23
Alignment explanation
Indices: 22078--22161 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
22068 CAATCTTATA
* *
22078 TGGCACTACGATGCATTTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
22101 CGGTACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
22124 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
*
22147 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
22162 TTTATACGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.27
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:25631 original size:40 final size:40
Alignment explanation
Indices: 25587--25664 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
25577 CTTTTGTGTA
**
25587 TGTTTGGTTAGTGAGAAAGTTGAAA-AAATTATAAGAAACT
1 TGTTTGGTTAGTGAGAAAGTT-AAAGAAAAGATAAGAAACT
25627 TGTTTGGTTAGTGAGAAAGTTAAAGAAAAGATAAGAAA
1 TGTTTGGTTAGTGAGAAAGTTAAAGAAAAGATAAGAAA
25665 TTAAAGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 3 0.09
40 32 0.91
ACGTcount: A:0.45, C:0.01, G:0.24, T:0.29
Consensus pattern (40 bp):
TGTTTGGTTAGTGAGAAAGTTAAAGAAAAGATAAGAAACT
Found at i:25663 original size:20 final size:20
Alignment explanation
Indices: 25640--25684 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
25630 TTGGTTAGTG
25640 AGAAAGTTAAA-GAAAAGATA
1 AGAAA-TTAAAGGAAAAGATA
* *
25660 AGAAATTAAAGGAATAGATG
1 AGAAATTAAAGGAAAAGATA
25680 AGAAA
1 AGAAA
25685 AAAAAGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.22, T:0.16
Consensus pattern (20 bp):
AGAAATTAAAGGAAAAGATA
Found at i:28767 original size:44 final size:44
Alignment explanation
Indices: 28704--28794 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
28694 AGCTACAGCC
28704 CATCGAAGAAAGCTAAGCTTCCTAAAAATCAGAGTGAAGAGAGG
1 CATCGAAGAAAGCTAAGCTTCCTAAAAATCAGAGTGAAGAGAGG
28748 CATCGAAGAAAGCTAAGCTTCCTAAAAATCAGAGTGAAGAGAGG
1 CATCGAAGAAAGCTAAGCTTCCTAAAAATCAGAGTGAAGAGAGG
28792 CAT
1 CAT
28795 AGTTTGTTCG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.16
Consensus pattern (44 bp):
CATCGAAGAAAGCTAAGCTTCCTAAAAATCAGAGTGAAGAGAGG
Found at i:50032 original size:73 final size:73
Alignment explanation
Indices: 49941--50086 Score: 276
Period size: 73 Copynumber: 2.0 Consensus size: 73
49931 TGTGTTTTTT
49941 GGGGGGGGGGGTATGTTCTATTTCAAAGCAATAACAACATAAGGTTGTTGAAGGAAATTAGCATA
1 GGGGGGGGGGGTATGTTCTATTTCAAAGCAATAACAACATAAGGTTGTTGAAGGAAATTAGCATA
50006 AAATTAAA
66 AAATTAAA
50014 GGGGGGGGGGGT-TAGTTCTATTTCAAAGCAATAACAACATAAGGTTGTTGAAGGAAATTAGCAT
1 GGGGGGGGGGGTAT-GTTCTATTTCAAAGCAATAACAACATAAGGTTGTTGAAGGAAATTAGCAT
50078 AAAATTAAA
65 AAAATTAAA
50087 AGTAAAACGG
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
72 1 0.01
73 71 0.99
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (73 bp):
GGGGGGGGGGGTATGTTCTATTTCAAAGCAATAACAACATAAGGTTGTTGAAGGAAATTAGCATA
AAATTAAA
Found at i:50394 original size:17 final size:17
Alignment explanation
Indices: 50346--50396 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
50336 AATTTAGTTC
50346 ACGGAATTAAGATTACCG
1 ACGGAA-TAAGATTACCG
* *
50364 ACAGAAATATGATTACCG
1 AC-GGAATAAGATTACCG
50382 ACGGAATAAGATTAC
1 ACGGAATAAGATTAC
50397 TGGAATGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 11 0.39
18 14 0.50
19 3 0.11
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.22
Consensus pattern (17 bp):
ACGGAATAAGATTACCG
Found at i:52748 original size:19 final size:19
Alignment explanation
Indices: 52724--52784 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
52714 TCAACCTAGA
52724 TTTCGACCATTCTCCTCAT
1 TTTCGACCATTCTCCTCAT
* * *
52743 TTTCGA-AATTACAACCT-AGA
1 TTTCGACCATT-C-TCCTCA-T
52763 TTTCGACCATTCTCCTCAT
1 TTTCGACCATTCTCCTCAT
52782 TTT
1 TTT
52785 TGAAATTACG
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
18 3 0.10
19 14 0.45
20 11 0.35
21 3 0.10
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.41
Consensus pattern (19 bp):
TTTCGACCATTCTCCTCAT
Found at i:52769 original size:39 final size:39
Alignment explanation
Indices: 52715--52793 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
52705 TTACCCCGAT
52715 CAACCTAGATTTCGACCATTCTCCTCATTTTCGAAATTA
1 CAACCTAGATTTCGACCATTCTCCTCATTTTCGAAATTA
*
52754 CAACCTAGATTTCGACCATTCTCCTCATTTTTGAAATTA
1 CAACCTAGATTTCGACCATTCTCCTCATTTTCGAAATTA
52793 C
1 C
52794 GAAACAAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.37
Consensus pattern (39 bp):
CAACCTAGATTTCGACCATTCTCCTCATTTTCGAAATTA
Found at i:61387 original size:55 final size:54
Alignment explanation
Indices: 61306--61502 Score: 163
Period size: 55 Copynumber: 3.6 Consensus size: 54
61296 ATGACGAGCC
* *
61306 TGCTCCCTATTCCTTCA-GGAAGTATAAGACTCGAACAATCCTTGGC-A-AACGTGT
1 TGCTCCCTATTCATTCAGGGAA-TATAAGACTCGAACAATCCTT--CAACAACGAGT
* * *
61360 CTTCTCCCTATTCATTTAGGGAATATAAGACTCAAACAAT-CTTCAACAACGAGT
1 -TGCTCCCTATTCATTCAGGGAATATAAGACTCGAACAATCCTTCAACAACGAGT
* * * * *
61414 TGCTCCCTATTCGTTCAGGGAGTATAAGAC-CGAACAAT-CTTCAAAAAAATGGGT
1 TGCTCCCTATTCATTCAGGGAATATAAGACTCGAACAATCCTTC--AACAACGAGT
* * * *
61468 CCGCTCCCTATTCCTTCAGAGAGTATAAGACTCGA
1 -TGCTCCCTATTCATTCAGGGAATATAAGACTCGA
61503 TCTTCAATAA
Statistics
Matches: 119, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
52 12 0.10
53 27 0.23
54 16 0.13
55 57 0.48
56 7 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (54 bp):
TGCTCCCTATTCATTCAGGGAATATAAGACTCGAACAATCCTTCAACAACGAGT
Found at i:61495 original size:108 final size:109
Alignment explanation
Indices: 61299--61604 Score: 292
Period size: 108 Copynumber: 2.9 Consensus size: 109
61289 TCTTTAAATG
* * *** * *
61299 ACGAGCCTGCTCCCTATTCCTTCAGGAAGTATAAGACTCGAACAATCCTT--GGCAAACGTGTCT
1 ACGAGTCTGCTCCCTATTCCTTCAGGGAGTATAAGAC-CGAACAAT-CTTCAAAAAAATGTGTCC
* * * * * *
61362 TCTCCCTATTCATTTAGGGAATATAAGACTCAAACAATCTTCAA-CA
64 GCTCCCTATTCCTTCAGAGAGTATAAGACTC-AACAATCTTCAATAA
* *
61408 ACGAGT-TGCTCCCTATTCGTTCAGGGAGTATAAGACCGAACAATCTTCAAAAAAATGGGTCCGC
1 ACGAGTCTGCTCCCTATTCCTTCAGGGAGTATAAGACCGAACAATCTTCAAAAAAATGTGTCCGC
*
61472 TCCCTATTCCTTCAGAGAGTATAAGACT---CGATCTTCAATAA
66 TCCCTATTCCTTCAGAGAGTATAAGACTCAACAATCTTCAATAA
* * * * ** *
61513 ACGTGTCCGCTCCCTATTCCTTCAGGGAGTATAGGA-C--TCAATCTTCAACGAACT-TGTCCGC
1 ACGAGTCTGCTCCCTATTCCTTCAGGGAGTATAAGACCGAACAATCTTCAAAAAAATGTGTCCGC
*
61574 TCCCTATTCCTTCAGAGAGTATATGACTCAA
66 TCCCTATTCCTTCAGAGAGTATAAGACTCAA
61605 TCTTCACGAA
Statistics
Matches: 164, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
102 33 0.20
103 13 0.08
104 9 0.05
105 7 0.04
106 29 0.18
107 8 0.05
108 60 0.37
109 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (109 bp):
ACGAGTCTGCTCCCTATTCCTTCAGGGAGTATAAGACCGAACAATCTTCAAAAAAATGTGTCCGC
TCCCTATTCCTTCAGAGAGTATAAGACTCAACAATCTTCAATAA
Found at i:61535 original size:51 final size:51
Alignment explanation
Indices: 61307--61668 Score: 311
Period size: 51 Copynumber: 6.9 Consensus size: 51
61297 TGACGAGCCT
** *
61307 GCTCCCTATTCCTTCAG-GAAGTATAAGACTCGAACAATCCTT-GGCAAACGTGTCT
1 GCTCCCTATTCCTTCAGAG-AGTATAAGACT----CAAT-CTTCAACAAACGTGTCC
* * * * * * *
61362 TCTCCCTATTCATTTAGGGAATATAAGACTCAAACAATCTTCAAC-AACGAGT-T
1 GCTCCCTATTCCTTCAGAGAGTATAAGACT----CAATCTTCAACAAACGTGTCC
* * * * * *
61415 GCTCCCTATTCGTTCAGGGAGTATAAGACCGAACAATCTTCAAAAAAATGGGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGA-C--TCAATCTTC-AACAAACGTGTCC
* *
61470 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGATCTTCAATAAACGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCC
* * * *
61521 GCTCCCTATTCCTTCAGGGAGTATAGGACTCAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCC
* * **
61572 GCTCCCTATTCCTTCAGAGAGTATATGACTCAATCTTC-ACGAATTTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCC
*
61622 GCTCCCTATTCCTTCAGAGAGTATAGGGACTCAATCTTCAACAAACG
1 GCTCCCTATTCCTTCAGAGAGTATA-AGACTCAATCTTCAACAAACG
61669 AGTTTGCTTC
Statistics
Matches: 260, Mismatches: 37, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
50 36 0.14
51 103 0.40
52 19 0.07
53 27 0.10
54 16 0.06
55 58 0.22
56 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (51 bp):
GCTCCCTATTCCTTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCC
Done.