Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007455.1 Hibiscus syriacus cultivar Beakdansim tig00020417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129383
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:6126 original size:18 final size:18
Alignment explanation
Indices: 6103--6194 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
6093 ACCGGTCACA
*
6103 ACCCGACCCGACCCGTTT
1 ACCCGACCCGACCCGTTG
*
6121 ACCCGA-CCGACCCGTTT
1 ACCCGACCCGACCCGTTG
*
6138 ACCCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
6156 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
6174 ACCTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
6192 ACC
1 ACC
6195 GACGTTGACC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
17 17 0.25
18 52 0.75
ACGTcount: A:0.17, C:0.48, G:0.20, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:7523 original size:18 final size:18
Alignment explanation
Indices: 7497--7532 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7487 TCGAAAGGAC
*
7497 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
7515 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
7533 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:8945 original size:2 final size:2
Alignment explanation
Indices: 8938--8964 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8928 GGGATGGGGG
8938 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8965 GTTTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9909 original size:37 final size:37
Alignment explanation
Indices: 9809--9909 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
9799 AACCGACAAA
* **
9809 TTCATCCATTAGGATGATAAATCAAATTATTGGTTGG
1 TTCATCCATTAGGATGATAAATCCAATTATTGACTGG
* *
9846 TTCATACATTAGGATGATAGATCCAATTATTGACTGG
1 TTCATCCATTAGGATGATAAATCCAATTATTGACTGG
* * * *
9883 TTCATCCTTTGGGATGGTAAACCCAAT
1 TTCATCCATTAGGATGATAAATCCAAT
9910 AACTGTATGG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (37 bp):
TTCATCCATTAGGATGATAAATCCAATTATTGACTGG
Found at i:16851 original size:42 final size:42
Alignment explanation
Indices: 16799--16927 Score: 204
Period size: 42 Copynumber: 3.1 Consensus size: 42
16789 TATAATCAGC
16799 CAGAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
1 CAGAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
* * * *
16841 CAGATTAGTTTTAATCACCCCCAATAGAAATTCAATCAATAG
1 CAGAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
* *
16883 AATAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
1 CAGAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
16925 CAG
1 CAG
16928 TTCAGTCAAC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (42 bp):
CAGAATAGTTTTAATCACCCTCAGTAGCAATTCAATCAATAG
Found at i:24384 original size:26 final size:27
Alignment explanation
Indices: 24346--24398 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
24336 ATAAACAACA
24346 AATATAATAAAAATATTA-ATGTCATTT
1 AATATAATAAAAATATTAGAT-TCATTT
*
24373 AATA-AATAAAAATGTTAGATTCATTT
1 AATATAATAAAAATATTAGATTCATTT
24399 CAAGTTCACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.40
Consensus pattern (27 bp):
AATATAATAAAAATATTAGATTCATTT
Found at i:24579 original size:2 final size:2
Alignment explanation
Indices: 24572--24615 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
24562 CTAAAACAAA
24572 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24614 AT
1 AT
24616 GGGAACTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30452 original size:45 final size:45
Alignment explanation
Indices: 30388--30493 Score: 212
Period size: 45 Copynumber: 2.4 Consensus size: 45
30378 GGTGCACTAA
30388 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCT
30433 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCT
30478 GAGTGCATCGATGCAT
1 GAGTGCATCGATGCAT
30494 GGTCTTGTGC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
GAGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAAGCCT
Found at i:30564 original size:45 final size:46
Alignment explanation
Indices: 30476--30564 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
30466 TTGAAAAAGC
* *
30476 CTGAGTGCATCGATGCATGGTCTTGTGCATAGATGCATCAAATGCA
1 CTGAGTGCATCGATGCATGGTCATGTGCATAGATGCATAAAATGCA
*
30522 CTGAGTGCATCGATGCATGGT-ATGTGCATCGATGCATAAAATG
1 CTGAGTGCATCGATGCATGGTCATGTGCATAGATGCATAAAATG
30565 AATTCGATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 19 0.47
46 21 0.52
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (46 bp):
CTGAGTGCATCGATGCATGGTCATGTGCATAGATGCATAAAATGCA
Found at i:31777 original size:21 final size:21
Alignment explanation
Indices: 31753--31802 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
31743 AGGAGCATGA
31753 AAGAGCTAAGAGCAGCTCGTG
1 AAGAGCTAAGAGCAGCTCGTG
31774 AAGAGCTAAGAGCAGCTCGTG
1 AAGAGCTAAGAGCAGCTCGTG
31795 AAGAGCTA
1 AAGAGCTA
31803 GCTCCCGGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.32, T:0.14
Consensus pattern (21 bp):
AAGAGCTAAGAGCAGCTCGTG
Found at i:37331 original size:22 final size:21
Alignment explanation
Indices: 37289--37328 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37279 GAGTTTATTT
*
37289 TCATTTTTGAATTTTGAAACA
1 TCATTTTTGAATTTTAAAACA
37310 TCATTTTT-ATATTTTAAAA
1 TCATTTTTGA-ATTTTAAAA
37329 ACAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (21 bp):
TCATTTTTGAATTTTAAAACA
Found at i:39409 original size:45 final size:46
Alignment explanation
Indices: 39320--39411 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
39310 TTTGAAAAAG
* *
39320 ACTGAGTGCATCGATGCATGGTCTTGTGCATCGATACATCAAATGC
1 ACTGAGTGCATCGATGCATGGTCATGTGCATCGATACATAAAATGC
* *
39366 ACTGAGTGCATCGATGCATGGT-ATGTGCATTGATGCATAAAATGC
1 ACTGAGTGCATCGATGCATGGTCATGTGCATCGATACATAAAATGC
39411 A
1 A
39412 TCGATGTTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 20 0.48
46 22 0.52
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (46 bp):
ACTGAGTGCATCGATGCATGGTCATGTGCATCGATACATAAAATGC
Found at i:41162 original size:49 final size:49
Alignment explanation
Indices: 41105--41329 Score: 306
Period size: 49 Copynumber: 4.3 Consensus size: 49
41095 AATAATTATT
41105 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
*
41154 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATATTAATG
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTG--------G
*
41211 ATTTAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
1 ---TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
* *
41263 TAGTAATGATTAATAATAATGAAATTATTATTAATATTTAATGATTTGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
41312 TAGTAATGATTTAGTAAT
1 TAGTAATGA-TTAGTAAT
41330 TATTAGTAAT
Statistics
Matches: 157, Mismatches: 7, Indels: 23
0.84 0.04 0.12
Matches are distributed among these distances:
49 102 0.65
50 7 0.04
52 1 0.01
57 1 0.01
60 46 0.29
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (49 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGG
Found at i:41226 original size:60 final size:60
Alignment explanation
Indices: 41154--41273 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
41144 AATGATTTGG
*
41154 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATATTAATGATT
1 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
* * *
41214 TAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATGATT
1 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
41274 AATAATAATG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (60 bp):
TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
Found at i:41226 original size:109 final size:109
Alignment explanation
Indices: 41097--41364 Score: 457
Period size: 109 Copynumber: 2.5 Consensus size: 109
41087 AAAATTATAA
* *
41097 TAATTATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATG
1 TAATGATTTAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATG
* *
41162 ATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGATAT
66 ATTAATAATAATAAAATTATTATTAATATTTAATGATTTGATAG
41206 TAATGATTTAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATG
1 TAATGATTTAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATG
*
41271 ATTAATAATAATGAAATTATTATTAATATTTAATGATTTGATAG
66 ATTAATAATAATAAAATTATTATTAATATTTAATGATTTGATAG
* *
41315 TAATGATTTAGTAATTATTAGTAATAATAAAATTA-TAATAATGATTTAAT
1 TAATGATTTAGTAATTATTAGTAATAATGAAATTATTATTAAT-ATTTAAT
41365 ACTAATATGG
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
108 6 0.04
109 145 0.96
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (109 bp):
TAATGATTTAGTAATTATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGGTAGTAATG
ATTAATAATAATAAAATTATTATTAATATTTAATGATTTGATAG
Found at i:41561 original size:19 final size:19
Alignment explanation
Indices: 41537--41722 Score: 89
Period size: 19 Copynumber: 10.1 Consensus size: 19
41527 AACCATAAAA
*
41537 ATGATTTAATAATGATTTG
1 ATGATTTAGTAATGATTTG
41556 ATGATTTAGTAATG-TTT-
1 ATGATTTAGTAATGATTTG
* * *
41573 TTAATATT--TAATAATTTG
1 ATGAT-TTAGTAATGATTTG
41591 ATGATTTAGTAATGATTT-
1 ATGATTTAGTAATGATTTG
* *
41609 -TAATATT--TAACGATTTG
1 ATGAT-TTAGTAATGATTTG
41626 ATGATTTAGTAATGATTT-
1 ATGATTTAGTAATGATTTG
*
41644 -TAATATT--TAATGATTTAG
1 ATGAT-TTAGTAATGATTT-G
*
41662 TAATGATTTGATAATAATGATTT-
1 --ATGA-TT--TAGTAATGATTTG
*
41685 -TAATATT--TAATGATTTG
1 ATGAT-TTAGTAATGATTTG
41702 ATGATTTAGTAATGATTTG
1 ATGATTTAGTAATGATTTG
41721 AT
1 AT
41723 AATAATCATT
Statistics
Matches: 126, Mismatches: 15, Indels: 52
0.65 0.08 0.27
Matches are distributed among these distances:
16 30 0.24
17 18 0.14
18 19 0.15
19 42 0.33
20 3 0.02
21 3 0.02
22 1 0.01
23 1 0.01
25 9 0.07
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.50
Consensus pattern (19 bp):
ATGATTTAGTAATGATTTG
Found at i:41595 original size:35 final size:35
Alignment explanation
Indices: 41546--41719 Score: 258
Period size: 35 Copynumber: 4.8 Consensus size: 35
41536 AATGATTTAA
*
41546 TAATGATTTGATGATTTAGTAATGTTTTTAATATT
1 TAATGATTTGATGATTTAGTAATGATTTTAATATT
*
41581 TAATAATTTGATGATTTAGTAATGATTTTAATATT
1 TAATGATTTGATGATTTAGTAATGATTTTAATATT
*
41616 TAACGATTTGATGATTTAGTAATGATTTTAATATT
1 TAATGATTTGATGATTTAGTAATGATTTTAATATT
*
41651 TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATT
1 TAATGATTT-G--ATGA-TT--TAGTAATGATTTTAATATT
41692 TAATGATTTGATGATTTAGTAATGATTT
1 TAATGATTTGATGATTTAGTAATGATTT
41720 GATAATAATC
Statistics
Matches: 126, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
35 85 0.67
36 1 0.01
37 2 0.02
38 8 0.06
39 2 0.02
40 1 0.01
41 27 0.21
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.51
Consensus pattern (35 bp):
TAATGATTTGATGATTTAGTAATGATTTTAATATT
Found at i:41651 original size:8 final size:9
Alignment explanation
Indices: 41536--41719 Score: 68
Period size: 11 Copynumber: 19.9 Consensus size: 9
41526 TAACCATAAA
41536 AATGATTTAAT
1 AATGATTT--T
41547 AATGA-TTT
1 AATGATTTT
*
41555 GATGATTTAGT
1 AATGATTT--T
*
41566 AATGTTTTT
1 AATGATTTT
41575 AAT-A-TTT
1 AATGATTTT
*
41582 AAT-AATTT
1 AATGATTTT
*
41590 GATGATTTAGT
1 AATGATTT--T
41601 AATGATTTT
1 AATGATTTT
41610 AAT-A-TTT
1 AATGATTTT
*
41617 AACGA-TTT
1 AATGATTTT
*
41625 GATGATTTAGT
1 AATGATTT--T
41636 AATGATTTT
1 AATGATTTT
41645 AAT-A-TTT
1 AATGATTTT
41652 AATGATTTAGT
1 AATGATTT--T
41663 AATGATTTGATAAT
1 AATGA-TT--T--T
41677 AATGATTTT
1 AATGATTTT
41686 AAT-A-TTT
1 AATGATTTT
41693 AATGA-TTT
1 AATGATTTT
*
41701 GATGATTTAGT
1 AATGATTT--T
41712 AATGATTT
1 AATGATTT
41720 GATAATAATC
Statistics
Matches: 137, Mismatches: 14, Indels: 44
0.70 0.07 0.23
Matches are distributed among these distances:
7 24 0.18
8 29 0.21
9 27 0.20
10 2 0.01
11 43 0.31
12 2 0.01
13 2 0.01
14 8 0.06
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.50
Consensus pattern (9 bp):
AATGATTTT
Found at i:41654 original size:7 final size:8
Alignment explanation
Indices: 41572--41709 Score: 63
Period size: 8 Copynumber: 16.5 Consensus size: 8
41562 TAGTAATGTT
41572 TTTAAT-A
1 TTTAATGA
*
41579 TTTAATAA
1 TTTAATGA
*
41587 TTTGATGA
1 TTTAATGA
41595 TTTAGTAATGA
1 -TT--TAATGA
41606 TTTTAAT-A
1 -TTTAATGA
*
41614 TTTAACGA
1 TTTAATGA
*
41622 TTTGATGA
1 TTTAATGA
41630 TTTAGTAATGA
1 -TT--TAATGA
41641 TTTTAAT-A
1 -TTTAATGA
41649 TTTAATGA
1 TTTAATGA
41657 TTTAGTAATGA
1 -TT--TAATGA
*
41668 TTTGAT-A
1 TTTAATGA
*
41675 -ATAATGA
1 TTTAATGA
41682 TTTTAAT-A
1 -TTTAATGA
41690 TTTAATGA
1 TTTAATGA
*
41698 TTTGATGA
1 TTTAATGA
41706 TTTA
1 TTTA
41710 GTAATGATTT
Statistics
Matches: 102, Mismatches: 13, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
6 3 0.03
7 25 0.25
8 32 0.31
9 18 0.18
10 2 0.02
11 22 0.22
ACGTcount: A:0.36, C:0.01, G:0.12, T:0.51
Consensus pattern (8 bp):
TTTAATGA
Found at i:41710 original size:49 final size:48
Alignment explanation
Indices: 41642--41738 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 48
41632 TAGTAATGAT
* *
41642 TTTAATATTTAATGATTTAGTAATGATTTGATAATAATGATTTTAATA
1 TTTAATATTTAATGATTTAGTAATGATTTGATAATAATCATTATAATA
*
41690 TTTAATGATTTGATGATTTAGTAATGATTTGATAATAATCATTATAATA
1 TTTAAT-ATTTAATGATTTAGTAATGATTTGATAATAATCATTATAATA
41739 ATGATTTAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
48 6 0.13
49 39 0.87
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.48
Consensus pattern (48 bp):
TTTAATATTTAATGATTTAGTAATGATTTGATAATAATCATTATAATA
Found at i:41740 original size:26 final size:26
Alignment explanation
Indices: 41711--41820 Score: 124
Period size: 26 Copynumber: 4.4 Consensus size: 26
41701 GATGATTTAG
41711 TAATGATTT-GATAATAATCATTATAA
1 TAATGATTTAG-TAATAATCATTATAA
41737 TAATGATTTAGTAATAATCATTATAA
1 TAATGATTTAGTAATAATCATTATAA
* * *
41763 TAATTA-TT--TAATAATAATGATAA
1 TAATGATTTAGTAATAATCATTATAA
*
41786 TAATGATTTAGTAATGAT--TTGATAA
1 TAATGATTTAGTAATAATCATT-ATAA
41811 TAATGATTTA
1 TAATGATTTA
41821 TTATTAATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
23 18 0.25
24 3 0.04
25 16 0.22
26 35 0.48
27 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.44
Consensus pattern (26 bp):
TAATGATTTAGTAATAATCATTATAA
Found at i:41773 original size:86 final size:86
Alignment explanation
Indices: 41651--41814 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 86
41641 TTTTAATATT
* * * *
41651 TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATTTAATGAT-TTGATGATTTAGTAAT
1 TAATGATTTAGTAATAATTTGATAATAATGATTTTAATA-ATAATGATAATAATGATTTAGTAAT
41715 GATTTGATAATAATCATTATAA
65 GATTTGATAATAATCATTATAA
*
41737 TAATGATTTAGTAATAATCATT-ATAATAATTA-TTTAATAATAATGATAATAATGATTTAGTAA
1 TAATGATTTAGTAATAAT--TTGATAATAATGATTTTAATAATAATGATAATAATGATTTAGTAA
41800 TGATTTGATAATAAT
64 TGATTTGATAATAAT
41815 GATTTATTAT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
85 7 0.10
86 52 0.74
87 9 0.13
88 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.11, T:0.45
Consensus pattern (86 bp):
TAATGATTTAGTAATAATTTGATAATAATGATTTTAATAATAATGATAATAATGATTTAGTAATG
ATTTGATAATAATCATTATAA
Found at i:41774 original size:23 final size:23
Alignment explanation
Indices: 41722--41820 Score: 108
Period size: 23 Copynumber: 4.1 Consensus size: 23
41712 AATGATTTGA
41722 TAATAATCATTATAATAATGATTT
1 TAATAATCATTATAATAATGA-TT
*
41746 AGTAATAATCATTATAATAATTATT
1 --TAATAATCATTATAATAATGATT
* *
41771 TAATAATAATGATAATAATGATT
1 TAATAATCATTATAATAATGATT
* *
41794 TAGTAATGATTTGATAATAATGATT
1 TAATAATCA-TT-ATAATAATGATT
41819 TA
1 TA
41821 TTATTAATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
23 27 0.42
24 1 0.02
25 16 0.25
26 20 0.31
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.43
Consensus pattern (23 bp):
TAATAATCATTATAATAATGATT
Found at i:41828 original size:14 final size:13
Alignment explanation
Indices: 41711--41917 Score: 97
Period size: 14 Copynumber: 16.5 Consensus size: 13
41701 GATGATTTAG
41711 TAATGATTTGATAA
1 TAATGATTT-ATAA
*
41725 TAATCA-TTATAA
1 TAATGATTTATAA
41737 TAATGATTTAGTAA
1 TAATGATTTA-TAA
*
41751 TAATCA-TTATAA
1 TAATGATTTATAA
*
41763 TAATTATTTAATAA
1 TAATGATTT-ATAA
41777 TAATG----ATAA
1 TAATGATTTATAA
*
41786 TAATGA-TT-TAG
1 TAATGATTTATAA
41797 TAATGATTTGATAA
1 TAATGATTT-ATAA
*
41811 TAATGATTTATTAT
1 TAATGATTTA-TAA
41825 TAAT-A--T-T--
1 TAATGATTTATAA
*
41832 TAATGATTTAAAA
1 TAATGATTTATAA
*
41845 CTAATGA-TT-TAC
1 -TAATGATTTATAA
41857 TAATGA-TTACTAA
1 TAATGATTTA-TAA
*
41870 TAATGAAATTATAA
1 TAATG-ATTTATAA
* *
41884 TCATGAAATTATAA
1 TAATG-ATTTATAA
* *
41898 TAATAATTTAATAC
1 TAATGATTT-ATAA
41912 TAATGA
1 TAATGA
41918 CTTAATAATT
Statistics
Matches: 152, Mismatches: 18, Indels: 46
0.70 0.08 0.21
Matches are distributed among these distances:
7 4 0.03
8 1 0.01
9 10 0.07
10 1 0.01
11 17 0.11
12 20 0.13
13 24 0.16
14 72 0.47
15 3 0.02
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (13 bp):
TAATGATTTATAA
Found at i:41849 original size:21 final size:22
Alignment explanation
Indices: 41811--41855 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
41801 GATTTGATAA
** *
41811 TAATGATTTATTATTAAT-ATT
1 TAATGATTTAAAACTAATGATT
41832 TAATGATTTAAAACTAATGATT
1 TAATGATTTAAAACTAATGATT
41854 TA
1 TA
41856 CTAATGATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (22 bp):
TAATGATTTAAAACTAATGATT
Found at i:41895 original size:135 final size:135
Alignment explanation
Indices: 41651--41926 Score: 332
Period size: 135 Copynumber: 2.0 Consensus size: 135
41641 TTTTAATATT
* *
41651 TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATTTAATGATTTGATGATTTAGTAATG
1 TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATTTAATGATTTAATGATTTACTAATG
* * *
41716 ATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTATAATAATTATTTAATAATAAT
66 ATTT-ATAATAATCATTATAATAATGAATTAGTAATAATAATTATAATAATAATTTAATAATAAT
41781 GA-TAA
130 GACTAA
*
41786 TAATGATTTAGTAATGATTTGATAATAATGA-TTTATTA-TTAAT-ATTTAATGATTTAAAACTA
1 TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATTTAATGATTTAATGATTT---ACTA
* * *
41848 ATGA-TT-TACTAATGATTACTAATAATGAAATTA-TAATCATGAAATTATAATAATAATTTAAT
63 ATGATTTATAATAATCATTA-TAATAATG-AATTAGTAATAAT--AATTATAATAATAATTTAAT
*
41910 ACTAATGACTTAA
124 AATAATGAC-TAA
41923 TAAT
1 TAAT
41927 TATTACTAAT
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
132 21 0.17
133 19 0.16
134 12 0.10
135 63 0.52
137 7 0.06
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (135 bp):
TAATGATTTAGTAATGATTTGATAATAATGATTTTAATATTTAATGATTTAATGATTTACTAATG
ATTTATAATAATCATTATAATAATGAATTAGTAATAATAATTATAATAATAATTTAATAATAATG
ACTAA
Found at i:41915 original size:11 final size:12
Alignment explanation
Indices: 41721--41939 Score: 76
Period size: 14 Copynumber: 17.7 Consensus size: 12
41711 TAATGATTTG
*
41721 ATAATAATCATT
1 ATAATAATAATT
*
41733 ATAATAATGATTT
1 ATAATAAT-AATT
*
41746 AGTAATAATCATT
1 A-TAATAATAATT
*
41759 ATAATAATTATT
1 ATAATAATAATT
*
41771 -TAATAATAATG
1 ATAATAATAATT
*
41782 ATAATAATGATT
1 ATAATAATAATT
* *
41794 -TAGTAATGATTT
1 ATAATAAT-AATT
*
41806 GATAATAATGATTT
1 -ATAATAAT-AATT
*
41820 ATTATTAAT-ATT
1 A-TAATAATAATT
*
41832 -TAATGAT--TT
1 ATAATAATAATT
* *
41841 AAAACTAATGATT
1 ATAA-TAATAATT
* *
41854 -TACTAATGATT
1 ATAATAATAATT
41865 ACTAATAATGAAATT
1 A-TAATAAT--AATT
*
41880 ATAATCATGAAATT
1 ATAATAAT--AATT
41894 ATAATAATAATT
1 ATAATAATAATT
* *
41906 -TAATACTAATG
1 ATAATAATAATT
*
41917 ACTTAATAATTATT
1 A--TAATAATAATT
41931 ACTAATAAT
1 A-TAATAAT
41940 TGTGGAATAA
Statistics
Matches: 158, Mismatches: 31, Indels: 35
0.71 0.14 0.16
Matches are distributed among these distances:
9 2 0.01
10 7 0.04
11 35 0.22
12 36 0.23
13 22 0.14
14 52 0.33
15 4 0.03
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.42
Consensus pattern (12 bp):
ATAATAATAATT
Found at i:43336 original size:14 final size:14
Alignment explanation
Indices: 43317--43350 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
43307 TTTTAATCAA
43317 AATAAATATTTTAT
1 AATAAATATTTTAT
43331 AATAAATATTTTAT
1 AATAAATATTTTAT
*
43345 ATTAAA
1 AATAAA
43351 ATAGCGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATAAATATTTTAT
Found at i:44670 original size:4 final size:4
Alignment explanation
Indices: 44661--44685 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
44651 AACTATGCCC
44661 ACTA ACTA ACTA ACTA ACTA ACTA A
1 ACTA ACTA ACTA ACTA ACTA ACTA A
44686 TAATTTAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACTA
Found at i:49714 original size:13 final size:13
Alignment explanation
Indices: 49696--49760 Score: 76
Period size: 13 Copynumber: 5.0 Consensus size: 13
49686 AATGACGCTC
49696 AATGCGCGTCATA
1 AATGCGCGTCATA
49709 AATGCGCGTCATA
1 AATGCGCGTCATA
***
49722 AATGTATGTCATA
1 AATGCGCGTCATA
* *
49735 AATGCGTGTCACA
1 AATGCGCGTCATA
*
49748 AAGGCGCGTCATA
1 AATGCGCGTCATA
49761 GACTTATGAC
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:53844 original size:18 final size:18
Alignment explanation
Indices: 53821--53866 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
53811 ATAAATAATC
53821 TTATATTTT-TACTACAGT
1 TTATATTTTCTA-TACAGT
*
53839 TTATATTTTCTATATAGT
1 TTATATTTTCTATACAGT
53857 TTAT-TTTTCT
1 TTATATTTTCT
53867 TGCATAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 2 0.08
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (18 bp):
TTATATTTTCTATACAGT
Found at i:54418 original size:21 final size:21
Alignment explanation
Indices: 54394--54446 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
54384 ATTCTGACTA
54394 TCGCATTGCGA-TTTCTCAAAT
1 TCGCATTGCGATTTTC-CAAAT
* *
54415 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
54436 TCGCAATGCGA
1 TCGCATTGCGA
54447 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:54461 original size:20 final size:20
Alignment explanation
Indices: 54436--54529 Score: 125
Period size: 20 Copynumber: 4.7 Consensus size: 20
54426 TTTTCCTAAT
*
54436 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGAAAA
* * *
54456 TCGCAACGCGATTAGGAAAA
1 TCGCAATGCGAATACGAAAA
*
54476 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGAAAA
*
54497 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGAAAA
54517 TCGCAATGCGAAT
1 TCGCAATGCGAAT
54530 CTGACTATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
20 45 0.69
21 20 0.31
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATACGAAAA
Found at i:54498 original size:41 final size:41
Alignment explanation
Indices: 54436--54529 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
54426 TTTTCCTAAT
* * *
54436 TCGCAATGCGAA-TACGTAAATCGCAACGCGATTAGGAAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATACGAAAA
* * *
54476 TCGCAATGCGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATACGAAAA
54517 TCGCAATGCGAAT
1 TCGCAATGCGAAT
54530 CTGACTATCG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 12 0.26
41 35 0.74
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (41 bp):
TCGCAATGCGAATTACGAAAATCGCAACGCGAATACGAAAA
Found at i:55142 original size:33 final size:33
Alignment explanation
Indices: 55080--55172 Score: 114
Period size: 33 Copynumber: 2.8 Consensus size: 33
55070 CGAGAATGAA
** *
55080 AATCGCAACGCGGAAATGACTATCACAACGAGAG
1 AATCGCAACGC-GAAATGAAAATCGCAACGAGAG
*
55114 AATCGCAACGCGAAATGAAAATCGCAACGAGAT
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
* **
55147 AATCGCAACACGAAACCAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
55173 TTGCGATTCT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
33 41 0.79
34 11 0.21
ACGTcount: A:0.45, C:0.25, G:0.19, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:55192 original size:14 final size:14
Alignment explanation
Indices: 55173--55226 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
55163 CAAAATCGCA
55173 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
55187 TTGCGATTTTCATTTCGTG
1 TTGCGA--TTC-TCTC--G
55206 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
55220 TTGCGAT
1 TTGCGAT
55227 AGTCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 14 0.42
16 6 0.18
17 6 0.18
19 7 0.21
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.46
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:55215 original size:33 final size:33
Alignment explanation
Indices: 55168--55275 Score: 117
Period size: 33 Copynumber: 3.1 Consensus size: 33
55158 GAAACCAAAA
*
55168 TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
* **
55201 TCGTGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
55234 TCCGCGTTGCGATTTTCATTCTCTCGTTGCGATTTTCATT
1 T-CGCGTTGCG------ATTCTCTCGTTGCGATTTTCATT
55274 TC
1 TC
55276 AACCAAAAGA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
33 30 0.49
34 8 0.13
39 1 0.02
40 22 0.36
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.45
Consensus pattern (33 bp):
TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:55252 original size:20 final size:21
Alignment explanation
Indices: 55212--55275 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 21
55202 CGTGTTGCGA
* **
55212 TTCTCTCGTTGCGATAGTCAT
1 TTCTCGCGTTGCGATTTTCAT
55233 TTC-CGCGTTGCGATTTTCA-
1 TTCTCGCGTTGCGATTTTCAT
*
55252 TTCTCTCGTTGCGATTTTCAT
1 TTCTCGCGTTGCGATTTTCAT
55273 TTC
1 TTC
55276 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 3 0.08
20 28 0.76
21 6 0.16
ACGTcount: A:0.11, C:0.25, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTCGCGTTGCGATTTTCAT
Found at i:57184 original size:94 final size:92
Alignment explanation
Indices: 56962--57239 Score: 392
Period size: 94 Copynumber: 3.1 Consensus size: 92
56952 TAGATTGCTT
* *
56962 AGTAAATTTATTCAGTTGCTGCTAATACTGCTAAAC----TATT-TATTAACACTGTGAAGTTAG
1 AGTAAATTTATTC-GTTGCTGCCAATTCTGCTAAACTGTGTATTCT-TTAACACTGTGAAGTTAG
57022 TATTTGTCTTTTGTTTTGTCTTTTGGTTGA
64 TATTTGTC-TTTGTTTTGTCTTTTGGTTGA
* *
57052 AGT--ATAT-TTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTA
1 AGTAAATTTATTCGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTA
57114 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * *
57142 AGTAAATTTATTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAATTTAGT
1 AGTAAATTTATTCG-TTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
57207 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
65 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
57235 AGTAA
1 AGTAA
57240 TGCAATCAAT
Statistics
Matches: 169, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
86 20 0.12
87 2 0.01
88 3 0.02
89 20 0.12
90 37 0.22
91 1 0.01
92 3 0.02
93 9 0.05
94 74 0.44
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (92 bp):
AGTAAATTTATTCGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:57377 original size:19 final size:19
Alignment explanation
Indices: 57328--57408 Score: 135
Period size: 19 Copynumber: 4.2 Consensus size: 19
57318 TCTTTTGGTT
*
57328 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
57347 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
*
57367 GAAACGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
57386 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
57405 GAAA
1 GAAA
57409 CTATAATCGT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 40 0.69
20 18 0.31
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.09
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:57416 original size:19 final size:19
Alignment explanation
Indices: 57334--57417 Score: 100
Period size: 19 Copynumber: 4.4 Consensus size: 19
57324 GGTTGAAATG
*
57334 AAAATCGCAACGAGAGAA-T
1 AAAATCGCAACGCGA-AACT
*
57353 GAAAATCGCAACGCGAAACG
1 -AAAATCGCAACGCGAAACT
57373 AAAATCGCAACGCGAAA-T
1 AAAATCGCAACGCGAAACT
57391 GAAAATCGCAACGCGAAACT
1 -AAAATCGCAACGCGAAACT
*
57411 ATAATCG
1 AAAATCG
57418 TATTGGGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
19 42 0.74
20 15 0.26
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:57471 original size:33 final size:33
Alignment explanation
Indices: 57424--57512 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
57414 ATCGTATTGG
* * *
57424 GATTTTTAGTTTCGCGTTGCGATTTTGTCGTTGC
1 GATTTTCA-TTTCGCGTTGCGATTCTCTCGTTGC
*
57458 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
57491 GATTTTCATTTCGCGTTGCGAT
1 GATTTTCATTTCGCGTTGCGAT
57513 AGTCATTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 43 0.86
34 7 0.14
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
Found at i:57478 original size:19 final size:18
Alignment explanation
Indices: 57454--57512 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
57444 GATTTTGTCG
57454 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
*
57472 ATTGCGA--TTC-TCTCG-
1 -TTGCGATTTTCATTTCGC
57487 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
57505 GTTGCGAT
1 -TTGCGAT
57513 AGTCATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (18 bp):
TTGCGATTTTCATTTCGC
Found at i:58054 original size:21 final size:20
Alignment explanation
Indices: 57995--58055 Score: 50
Period size: 21 Copynumber: 3.0 Consensus size: 20
57985 CTCGATAGTC
*
57995 CCCTCCCACCTTTCAAGAGG
1 CCCTCCCACCATTCAAGAGG
** * * *
58015 CCACTGTCATCGTTGAAGAGG
1 CC-CTCCCACCATTCAAGAGG
58036 TCCCTCCCACCATTCAAGAG
1 -CCCTCCCACCATTCAAGAG
58056 CCCGATTCAC
Statistics
Matches: 29, Mismatches: 10, Indels: 3
0.69 0.24 0.07
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.23, C:0.38, G:0.18, T:0.21
Consensus pattern (20 bp):
CCCTCCCACCATTCAAGAGG
Found at i:59426 original size:14 final size:14
Alignment explanation
Indices: 59407--59442 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
59397 ATTGTTTAAT
59407 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
59421 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
59435 TGATTTGT
1 TGATTTGT
59443 TTAATTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:59608 original size:19 final size:19
Alignment explanation
Indices: 59549--59616 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
59539 AAAAATGACT
* *
59549 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCAAAATGAAA
*
59568 ATCGCAACG----A-GAGA
1 ATCGCAACGCAAAATGAAA
59582 ATCGCAACGCAAAATGAAA
1 ATCGCAACGCAAAATGAAA
59601 ATCGCAACGACAAAAT
1 ATCGCAACG-CAAAAT
59617 CGCAATGCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 12 0.30
15 1 0.03
18 1 0.03
19 20 0.50
20 6 0.15
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.12
Consensus pattern (19 bp):
ATCGCAACGCAAAATGAAA
Found at i:59635 original size:33 final size:33
Alignment explanation
Indices: 59549--59642 Score: 127
Period size: 33 Copynumber: 2.8 Consensus size: 33
59539 AAAAATGACT
* *
59549 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
59582 ATCGCAACGCAAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
59615 ATCGCAATGCGAAACT-AAAATCACAACG
1 ATCGCAATGCGAAA-TGAAAATCGCAACG
59643 CGAAACTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
33 52 0.98
34 1 0.02
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:59636 original size:19 final size:19
Alignment explanation
Indices: 59581--59657 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
59571 GCAACGAGAG
*
59581 AATCGCAACGC-AAAATGAA
1 AATCGCAACGCGAAACT-AA
59600 AATCGCAA--CG--AC-AA
1 AATCGCAACGCGAAACTAA
*
59614 AATCGCAATGCGAAACTAA
1 AATCGCAACGCGAAACTAA
*
59633 AATCACAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
*
59652 ATTCGC
1 AATCGC
59658 GTTGCGATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 10 0.21
16 3 0.06
17 1 0.02
18 2 0.04
19 31 0.66
ACGTcount: A:0.48, C:0.25, G:0.14, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:59675 original size:19 final size:19
Alignment explanation
Indices: 59653--59770 Score: 67
Period size: 19 Copynumber: 6.7 Consensus size: 19
59643 CGAAACTAAA
59653 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
** *
59672 TTCGTATTACGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
59687 -TCTCGTTGCGATTTTTAT
1 TTCGCGTTGCGATTTTCAT
*
59705 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
59720 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* **
59738 TTCGCATTGCGATAGTCAT
1 TTCGCGTTGCGATTTTCAT
59757 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
59771 AGACATTAAG
Statistics
Matches: 70, Mismatches: 18, Indels: 21
0.64 0.17 0.19
Matches are distributed among these distances:
14 16 0.23
16 5 0.07
17 5 0.07
19 34 0.49
20 10 0.14
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:59699 original size:33 final size:33
Alignment explanation
Indices: 59657--59750 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
59647 ACTAAATTCG
* *
59657 CGTTGCGATTTTCATTTCGTATTACGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
59690 CGTTGCGATTTTTATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
59723 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
59751 AGTCATTTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:59769 original size:20 final size:20
Alignment explanation
Indices: 59723--59816 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 20
59713 GCGATTCTCT
**
59723 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATAGTCATTTCCG
*
59742 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* **
59762 CGTTGCGATAGACA-TTAAG
1 CGTTGCGATAGTCATTTCCG
*
59781 ATGATTGCGA-ACGTCATTTCCG
1 -CG-TTGCGATA-GTCATTTCCG
*
59803 TGTTGCGATAGTCA
1 CGTTGCGATAGTCA
59817 AATGAATGCC
Statistics
Matches: 58, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
19 17 0.29
20 26 0.45
21 12 0.21
22 3 0.05
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:62347 original size:24 final size:24
Alignment explanation
Indices: 62296--62347 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
62286 ATCCAAGTAT
** *
62296 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
62320 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
62344 TGAC
1 TGAC
62348 TAGTACTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:63254 original size:41 final size:40
Alignment explanation
Indices: 63208--63628 Score: 413
Period size: 41 Copynumber: 10.3 Consensus size: 40
63198 CGATTTACTG
* * *
63208 AATCGCAATGCGATTACGTAAATCG-AAGTGCAAATTAGGAA
1 AATCGCAATGCGATTACGTAAATCGCAA-TGC-GATTACGTA
63249 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
1 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
63289 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
1 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
* *
63329 AATCGCAATGCGAATTAGGAAAATCGCAATGCGATTACGTA
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCGATTACGTA
* * * *
63370 AATCGCAATGCGAATTAGGAAAATCGCAATGCGAATTAGGAA
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCG-ATTACGTA
*
63412 AATCGCAATGCGGTTACGTAAATCGCAATGCGATTACGTA
1 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
* * * * *
63452 AATCGCAATGCGAATACGT-AATCGCATTGTGATTTTCCTA
1 AATCGCAATGCGATTACGTAAATCGCAATGCGA-TTACGTA
* * * * *
63492 ATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCTA
1 AATCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTA
* * *
63533 ATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTACGT-
1 AATCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTA
* * * * * * *
63573 ATTTGCATTGCGAATTAGGAAAATCGCAACGCGAATTTA-GGA
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCG-A-TTACGTA
63615 AATCGCAATGCGAT
1 AATCGCAATGCGAT
63629 AGTCAGAATC
Statistics
Matches: 338, Mismatches: 33, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
39 11 0.03
40 112 0.33
41 181 0.54
42 34 0.10
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (40 bp):
AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
Found at i:63276 original size:61 final size:60
Alignment explanation
Indices: 63208--63628 Score: 413
Period size: 61 Copynumber: 6.9 Consensus size: 60
63198 CGATTTACTG
* * *
63208 AATCGCAATGCGATTACGTAAATCG-AAGTGCAAATTAGGAAAATCGCAATGCGATTACGTA
1 AATCGCAATGCGATTACGTAAATCGCAA-TGC-GATTACGTAAATCGCAATGCGATTACGTA
63269 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
1 AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
* * * *
63329 AATCGCAATGCGAATTAGGAAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAA
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCG-ATTACGTA
* * *
63391 AATCGCAATGCGAATTAGGAAAATCGCAATGCGGTTACGTAAATCGCAATGCGATTACGTA
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
* * * * * * *
63452 AATCGCAATGCGAATACGT-AATCGCATTGTGATTTTCCTAATTCGCATTGCGATTTACGT-
1 AATCGCAATGCGATTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTA
* * * * * *
63512 AATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTACGT-
1 AATCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTA
* * * * * * *
63573 ATTTGCATTGCGAATTAGGAAAATCGCAACGCGAATTTA-GGAAATCGCAATGCGAT
1 AATCGCAATGCG-ATTACGTAAATCGCAATGCG-A-TTACGTAAATCGCAATGCGAT
63629 AGTCAGAATC
Statistics
Matches: 310, Mismatches: 40, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
59 10 0.03
60 70 0.23
61 136 0.44
62 94 0.30
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (60 bp):
AATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTA
Found at i:63518 original size:183 final size:182
Alignment explanation
Indices: 63208--63628 Score: 458
Period size: 183 Copynumber: 2.3 Consensus size: 182
63198 CGATTTACTG
* * * * *
63208 AATCGCAATGCG-ATTACGTAAATCG-AAGTGCAAATTAGGAAAATCGCAATGCGATTACGTAAA
1 AATCGCAATGCGAATTAGGAAAATCGCAA-CGCGAGTTAGG-AAATCGCAATGCGATTACGTAAA
* *
63271 TCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCA
64 TCGCAATGCGAATACGTAAATCGCAATGCGATTACCTAAATCGCAATGCGATTACGTAAATCGCA
** *
63336 ATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGAA
129 ATGCGAATTACCAAAATCGCAATGCGATTTACGT-AATCGCAATGCGAATTACG-A
* *
63391 AATCGCAATGCGAATTAGGAAAATCGCAATGCG-GTTACGTAAATCGCAATGCGATTACGTAAAT
1 AATCGCAATGCGAATTAGGAAAATCGCAACGCGAGTTA-GGAAATCGCAATGCGATTACGTAAAT
* * * * *
63455 CGCAATGCGAATACGT-AATCGCATTGTGATTTTCCTAATTCGCATTGCGATTTACGT-AATCGC
65 CGCAATGCGAATACGTAAATCGCAATGCGA-TTACCTAAATCGCAATGCGA-TTACGTAAATCGC
* * * * * * * * *
63518 ATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACGT
128 AATGCGAATTACCAAAATCGCAATGCGATTTACGTAATCGCAATGCGAATTACGA
* * * *
63573 ATTTGCATTGCGAATTAGGAAAATCGCAACGCGAATTTAGGAAATCGCAATGCGAT
1 AATCGCAATGCGAATTAGGAAAATCGCAACGCG-AGTTAGGAAATCGCAATGCGAT
63629 AGTCAGAATC
Statistics
Matches: 200, Mismatches: 30, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
182 40 0.20
183 128 0.64
184 30 0.15
185 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (182 bp):
AATCGCAATGCGAATTAGGAAAATCGCAACGCGAGTTAGGAAATCGCAATGCGATTACGTAAATC
GCAATGCGAATACGTAAATCGCAATGCGATTACCTAAATCGCAATGCGATTACGTAAATCGCAAT
GCGAATTACCAAAATCGCAATGCGATTTACGTAATCGCAATGCGAATTACGA
Found at i:63568 original size:20 final size:19
Alignment explanation
Indices: 63208--63628 Score: 322
Period size: 20 Copynumber: 20.7 Consensus size: 19
63198 CGATTTACTG
63208 AATCGCAATGCGATTACGT
1 AATCGCAATGCGATTACGT
* * *
63227 AAATCG-AAGTGCAAATTAGGAA
1 -AATCGCAA-TGC-GATTACG-T
63249 AATCGCAATGCGATTACGT
1 AATCGCAATGCGATTACGT
63268 AAATCGCAATGCGATTACGT
1 -AATCGCAATGCGATTACGT
63288 AAATCGCAATGCGATTACGT
1 -AATCGCAATGCGATTACGT
63308 AAATCGCAATGCGATTACGT
1 -AATCGCAATGCGATTACGT
* *
63328 AAATCGCAATGCGAATTAGGAA
1 -AATCGCAATGCG-ATTACG-T
63350 AATCGCAATGCGATTACGT
1 AATCGCAATGCGATTACGT
* *
63369 AAATCGCAATGCGAATTAGGAA
1 -AATCGCAATGCG-ATTACG-T
* *
63391 AATCGCAATGCGAATTAGGAA
1 AATCGCAATGCG-ATTACG-T
*
63412 AATCGCAATGCGGTTACGT
1 AATCGCAATGCGATTACGT
63431 AAATCGCAATGCGATTACGT
1 -AATCGCAATGCGATTACGT
*
63451 AAATCGCAATGCGAATACGT
1 -AATCGCAATGCGATTACGT
* * * *
63471 AATCGCATTGTGATTTTCCT
1 AATCGCAATGCGA-TTACGT
*
63491 AATTCGCATTGCGATTTACGT
1 AA-TCGCAATGCGA-TTACGT
* * *
63512 AATCGCATTGCGATTTTCCT
1 AATCGCAATGCGA-TTACGT
*
63532 AATTCGCATTGCGATTTACGT
1 AA-TCGCAATGCGA-TTACGT
*
63553 AATCGCATTGCGATTTACGT
1 AATCGCAATGCGA-TTACGT
* * * * *
63573 ATTTGCATTGCGAATTAGGAA
1 AATCGCAATGCG-ATTACG-T
* * *
63594 AATCGCAACGCGAATTTAGGA
1 AATCGCAATGCG-A-TTACGT
63615 AATCGCAATGCGAT
1 AATCGCAATGCGAT
63629 AGTCAGAATC
Statistics
Matches: 346, Mismatches: 38, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
19 14 0.04
20 199 0.58
21 126 0.36
22 7 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (19 bp):
AATCGCAATGCGATTACGT
Found at i:63608 original size:21 final size:21
Alignment explanation
Indices: 63582--63627 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
63572 TATTTGCATT
63582 GCGAA-TTAGGAAAATCGCAAC
1 GCGAATTTAGG-AAATCGCAAC
*
63603 GCGAATTTAGGAAATCGCAAT
1 GCGAATTTAGGAAATCGCAAC
63624 GCGA
1 GCGA
63628 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTTAGGAAATCGCAAC
Found at i:65083 original size:20 final size:20
Alignment explanation
Indices: 65058--65098 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
65048 AGATCTACGT
65058 TGTTTGAGGCATA-TTTTGGG
1 TGTTTG-GGCATAGTTTTGGG
*
65078 TGTTTGGGCTTAGTTTTGGG
1 TGTTTGGGCATAGTTTTGGG
65098 T
1 T
65099 CTAGGGTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.10, C:0.05, G:0.37, T:0.49
Consensus pattern (20 bp):
TGTTTGGGCATAGTTTTGGG
Found at i:66402 original size:43 final size:43
Alignment explanation
Indices: 66314--66403 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
66304 TAATCTTTTA
** * * * *
66314 AATCTTATTTTTTATCTTTATAAATGAGGTTTTAATTTTATTC
1 AATCTTACCTTTTATATTTATAAATGAAGTTCTAATTTTACTC
*
66357 AATCTTACCTTTTATATTTATAATTGAAGTCTCTAATTTT-CTC
1 AATCTTACCTTTTATATTTATAAATGAAGT-TCTAATTTTACTC
66400 AATC
1 AATC
66404 CCTTTTTTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 31 0.79
44 8 0.21
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (43 bp):
AATCTTACCTTTTATATTTATAAATGAAGTTCTAATTTTACTC
Found at i:66436 original size:43 final size:42
Alignment explanation
Indices: 66389--66471 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
66379 ATTGAAGTCT
** * *
66389 CTAATTTTCTCAATCCCTTTTTTTACCTTTATAATTGAGGCAC
1 CTAATTTT-TCAATCCCGCTTTTTAACTTTATAATTAAGGCAC
* *
66432 CTAATTTTTTAATCTCGCTTTTTAACTTTATAATTAAGGC
1 CTAATTTTTCAATCCCGCTTTTTAACTTTATAATTAAGGC
66472 CTTTAAGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.48
Consensus pattern (42 bp):
CTAATTTTTCAATCCCGCTTTTTAACTTTATAATTAAGGCAC
Found at i:66519 original size:53 final size:50
Alignment explanation
Indices: 66457--66650 Score: 165
Period size: 53 Copynumber: 3.9 Consensus size: 50
66447 CGCTTTTTAA
* * *
66457 CTTTATAATTAAGGCCTTTAAGTTTTTTTAATCTCACTTTCTACCATTTCCAC
1 CTTTATAATTGAGGCCTCTAAGTTTTTTCAATCTCACTTT-TACC-TTT-CAC
* *
66510 CTTTATAATTGA-GCCTCTAA-TTTTTT-AATC-CA-ATTT---TTT-AA
1 CTTTATAATTGAGGCCTCTAAGTTTTTTCAATCTCACTTTTACCTTTCAC
* * *
66551 CTTTATAATTGATG-CTCTTAAGTTTTTTCAATATCACTTTCTACGTTTTCTAC
1 CTTTATAATTGAGGCCTC-TAAGTTTTTTCAATCTCACTTT-TAC-CTTTC-AC
* *
66604 CTTTACAATTGAGGCCTCTAAGTTTTTTCAATCTCAATTTTACCTTT
1 CTTTATAATTGAGGCCTCTAAGTTTTTTCAATCTCACTTTTACCTTT
66651 ATAATTGAAG
Statistics
Matches: 115, Mismatches: 12, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
41 16 0.14
42 4 0.03
43 9 0.08
44 3 0.03
45 2 0.02
46 2 0.02
47 2 0.02
48 2 0.02
49 2 0.02
50 4 0.03
51 12 0.10
52 10 0.09
53 44 0.38
54 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.49
Consensus pattern (50 bp):
CTTTATAATTGAGGCCTCTAAGTTTTTTCAATCTCACTTTTACCTTTCAC
Found at i:66575 original size:94 final size:95
Alignment explanation
Indices: 66413--66685 Score: 344
Period size: 94 Copynumber: 2.9 Consensus size: 95
66403 CCCTTTTTTT
**
66413 ACCTTTATAATTGAGGCAC-CTAATTTTTTAATCTCGCTTTTTAACTTTATAATT-AAGGC-CTT
1 ACCTTTATAATTGAGGC-CTCTAATTTTTTAATCTCAATTTTTAACTTTATAATTGAA-GCTC-T
66475 TAAGTTTTTTTAATCTCACTTTCTACCATTTCC
63 TAAGTTTTTTTAATCTCACTTTCTACCATTTCC
*
66508 ACCTTTATAATTGA-GCCTCTAATTTTTTAATC-CAATTTTTTAACTTTATAATTGATGCTCTTA
1 ACCTTTATAATTGAGGCCTCTAATTTTTTAATCTCAA-TTTTTAACTTTATAATTGAAGCTCTTA
* * ** *
66571 AGTTTTTTCAATATCACTTTCTACGTTTTCT
65 AGTTTTTTTAATCTCACTTTCTACCATTTCC
* * *
66602 ACCTTTACAATTGAGGCCTCTAAGTTTTTTCAATCTCAA-TTTTACCTTTATAATTGAAGCTCCT
1 ACCTTTATAATTGAGGCCTCTAA-TTTTTT-AATCTCAATTTTTAACTTTATAATTGAAGCTCTT
66666 AA-TTTTTTTAATCTCACTTT
64 AAGTTTTTTTAATCTCACTTT
66686 TTAATTTTAT
Statistics
Matches: 156, Mismatches: 14, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
93 2 0.01
94 77 0.49
95 40 0.26
96 30 0.19
97 4 0.03
98 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (95 bp):
ACCTTTATAATTGAGGCCTCTAATTTTTTAATCTCAATTTTTAACTTTATAATTGAAGCTCTTAA
GTTTTTTTAATCTCACTTTCTACCATTTCC
Found at i:66673 original size:43 final size:42
Alignment explanation
Indices: 66601--66851 Score: 222
Period size: 43 Copynumber: 5.8 Consensus size: 42
66591 CTACGTTTTC
* *
66601 TACCTTTACAATTGAGGCCTCTAAGTTTTTTCAATCTCAATTT
1 TACCTTTATAATTGAAGCC-CTAAGTTTTTTCAATCTCAATTT
* *
66644 TACCTTTATAATTGAAGCTCCTAA-TTTTTTTAATCTCACTTTT
1 TACCTTTATAATTGAAGC-CCTAAGTTTTTTCAATCTCA-ATTT
**
66687 TAATTTTATAATTG-AGACCCTTAAGTTTTTTCAATCTCAATTT
1 TACCTTTATAATTGAAG-CCC-TAAGTTTTTTCAATCTCAATTT
* * * * * *
66730 CTACCTTTATAATTGAGGTTCATAAGGTTTTTCAATCTCGATTA
1 -TACCTTTATAATTGAAG-CCCTAAGTTTTTTCAATCTCAATTT
*
66774 TACTTTTATAATTG-AGACCCTAAGTTTTTTTTTCAATCTCAATTT
1 TACCTTTATAATTGAAG-CCCTAAG---TTTTTTCAATCTCAATTT
* *
66819 TACCTTTATAAGT-AAGGCCTCTAACTTTTTTCA
1 TACCTTTATAATTGAA-GCC-CTAAGTTTTTTCA
66852 TTTCATAAAA
Statistics
Matches: 167, Mismatches: 28, Indels: 26
0.76 0.13 0.12
Matches are distributed among these distances:
42 23 0.14
43 63 0.38
44 45 0.27
45 31 0.19
46 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (42 bp):
TACCTTTATAATTGAAGCCCTAAGTTTTTTCAATCTCAATTT
Found at i:66781 original size:87 final size:85
Alignment explanation
Indices: 66605--66829 Score: 276
Period size: 87 Copynumber: 2.6 Consensus size: 85
66595 GTTTTCTACC
* * * *
66605 TTTACAATTGAG-GCCTCTAAGTTTTTTCAATCTCAATTTTACCTTTATAATTGAAGCTCCTAAT
1 TTTATAATTGAGACCCT-TAAGTTTTTTCAATCTCAATTTTACCTTTATAATTGAAGCTCATAAG
* *
66669 TTTTTTAATCTCACTTTTTAAT
65 TTTTTCAATCTCAC-TTATAAT
* *
66691 TTTATAATTGAGACCCTTAAGTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGTTCATAAG
1 TTTATAATTGAGACCCTTAAGTTTTTTCAATCTCAATTT-TACCTTTATAATTGAAGCTCATAA-
*
66756 GTTTTTCAATCTCGA-TTATACT
64 GTTTTTCAATCTC-ACTTATAAT
66778 TTTATAATTGAGACCC-TAAGTTTTTTTTTCAATCTCAATTTTACCTTTATAA
1 TTTATAATTGAGACCCTTAAG---TTTTTTCAATCTCAATTTTACCTTTATAA
66830 GTAAGGCCTC
Statistics
Matches: 123, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
86 37 0.30
87 45 0.37
88 22 0.18
89 19 0.15
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (85 bp):
TTTATAATTGAGACCCTTAAGTTTTTTCAATCTCAATTTTACCTTTATAATTGAAGCTCATAAGT
TTTTCAATCTCACTTATAAT
Found at i:68131 original size:17 final size:17
Alignment explanation
Indices: 68109--68143 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
68099 GAATATTTTT
68109 TTTATTGGGTTTTAAAA
1 TTTATTGGGTTTTAAAA
68126 TTTATTGGGTTTTAAAA
1 TTTATTGGGTTTTAAAA
68143 T
1 T
68144 ATTAATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTATTGGGTTTTAAAA
Found at i:68969 original size:26 final size:28
Alignment explanation
Indices: 68940--68999 Score: 70
Period size: 31 Copynumber: 2.1 Consensus size: 28
68930 GAATGACAAT
68940 AACACT-TATGTGT-ATTATCTGAATGC
1 AACACTATATGTGTCATTATCTGAATGC
*
68966 AACACTGACTTTGTGTGCATTATCTGAATGC
1 AACACT-A-TATGTGT-CATTATCTGAATGC
68997 AAC
1 AAC
69000 TGCTATTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
29 6 0.21
31 16 0.57
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (28 bp):
AACACTATATGTGTCATTATCTGAATGC
Found at i:71505 original size:13 final size:13
Alignment explanation
Indices: 71498--71538 Score: 64
Period size: 13 Copynumber: 3.0 Consensus size: 13
71488 TCTTTTCTTC
71498 TTAACTTTTCACT
1 TTAACTTTTCACT
71511 TTAACTTTTCACACT
1 TTAACTTTT--CACT
71526 TTAACTTTTCACT
1 TTAACTTTTCACT
71539 CTTCCCCTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.50
15 13 0.50
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (13 bp):
TTAACTTTTCACT
Found at i:71527 original size:15 final size:15
Alignment explanation
Indices: 71498--71537 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
71488 TCTTTTCTTC
71498 TTAACTTTT--CACT
1 TTAACTTTTCACACT
71511 TTAACTTTTCACACT
1 TTAACTTTTCACACT
71526 TTAACTTTTCAC
1 TTAACTTTTCAC
71538 TCTTCCCCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 9 0.36
15 16 0.64
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAACTTTTCACACT
Found at i:73157 original size:193 final size:193
Alignment explanation
Indices: 72802--73158 Score: 468
Period size: 193 Copynumber: 1.8 Consensus size: 193
72792 GTGTTTTGCT
**
72802 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATTTGTGACAATATAAATATCAA
1 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCCGTGACAATATAAATATCAA
* **
72867 TAACGAAATCTTATTTAATTTAGTGATGTAACCAACTGTCATAGAATATAAATTATAAAGTGACG
66 TAACGAAATCTTAATTAATTTAGTGACATAACCAACTGTCATAGAATATAAATTATAAAGTGACG
* * *
72932 TTATGCATAAACGTCATTCATAATATTATTAGGTAACATTTATATTATGTCACTAAAAATGTG
131 TTATACATAAACGTCATCCATAATACTATTAGGTAACATTTATATTATGTCACTAAAAATGTG
* * *
72995 ACAATATCTCTTTCGTCACATATATGTTGATTTTAATGTATTATCCGTGACGATATAAATCATCA
1 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCCGTGACAATATAAAT-ATCA
** * * * * *
73060 ATAACGAAAT-TTAAATT-ATTTAGTGACATAA-TTAGTTTCCATTGAATATTAATTATATAGTG
65 ATAACGAAATCTT-AATTAATTTAGTGACATAACCAACTGT-CATAGAATATAAATTATAAAGTG
* * **
73122 ACGTTATATATAAATGTCATCCATGCTACTATTAGGT
128 ACGTTATACATAAACGTCATCCATAATACTATTAGGT
73159 GACGATACTA
Statistics
Matches: 139, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
192 3 0.02
193 119 0.86
194 17 0.12
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (193 bp):
ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCCGTGACAATATAAATATCAA
TAACGAAATCTTAATTAATTTAGTGACATAACCAACTGTCATAGAATATAAATTATAAAGTGACG
TTATACATAAACGTCATCCATAATACTATTAGGTAACATTTATATTATGTCACTAAAAATGTG
Found at i:80559 original size:243 final size:241
Alignment explanation
Indices: 80108--80593 Score: 863
Period size: 243 Copynumber: 2.0 Consensus size: 241
80098 ATGATTCCAA
80108 GGATTTTCCTGACAAAAATTTTATTTGCCACGGCTGTGTCGTGGTACGCTGACATAGTTAACTTT
1 GGATTTTCCTGACAAAAATTTTATTTGCCACGGCTGTGTCGTGGTACGCTGACATAGTTAACTTT
80173 GTTAGTGGTGTTATGCCTCCAGATTTATCTAGCTAGGGCAGGAAAAATCCAGACATGAAGTACAC
66 GTTAGTGGTGTTATGCCTCCAGATTTATCTAGCTAGGGCA-GAAAAATCCAGACATGAAGTACAC
80238 CACTATTATTGGGATAAAACATTCCTATTCAAGTAATATGGCACCACATAATCCGCATGTGTGTC
130 CACTATTATTGGGATAAAACATTCCTATTCAAGTAATATGGCACCACATAATCCGCATGTGTGTC
80303 CCTGAAGAGTAACATAAGGAG-TTTTATTTCATTGTC-TTTATCCCC
195 CCTGAAGAGTAACATAAGGAGATTTTATTTCATTGTCATTTATCCCC
*
80348 GGATTTTCCTGACAAGAAAATTTTATTTGCCACGGCTGTGTCGTGGTACGCTGATATAGTTAACT
1 GGATTTTCCTGAC-A-AAAATTTTATTTGCCACGGCTGTGTCGTGGTACGCTGACATAGTTAAC-
80413 TTCTTGTTAGTGGTGTTATGCCTCCAGATTTATCTAGCTAGGGCA-AAAAATCCAGACATGAAGT
63 -T-TTGTTAGTGGTGTTATGCCTCCAGATTTATCTAGCTAGGGCAGAAAAATCCAGACATGAAGT
*
80477 ACACCATTATTATTGGGAT-AAACATTCCTATTCAAGTAATATGGCAACCACATAATCCGCATGT
126 ACACCACTATTATTGGGATAAAACATTCCTATTCAAGTAATATGGC-ACCACATAATCCGCATGT
80541 GTGTCCCTGAAGAGTAACATAAGGAGATTTTATTTCATTGTCATTTATCCCC
190 GTGTCCCTGAAGAGTAACATAAGGAGATTTTATTTCATTGTCATTTATCCCC
80593 G
1 G
80594 TGTGGAGGCC
Statistics
Matches: 236, Mismatches: 2, Indels: 11
0.95 0.01 0.04
Matches are distributed among these distances:
240 13 0.06
241 1 0.00
242 73 0.31
243 81 0.34
244 16 0.07
245 52 0.22
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (241 bp):
GGATTTTCCTGACAAAAATTTTATTTGCCACGGCTGTGTCGTGGTACGCTGACATAGTTAACTTT
GTTAGTGGTGTTATGCCTCCAGATTTATCTAGCTAGGGCAGAAAAATCCAGACATGAAGTACACC
ACTATTATTGGGATAAAACATTCCTATTCAAGTAATATGGCACCACATAATCCGCATGTGTGTCC
CTGAAGAGTAACATAAGGAGATTTTATTTCATTGTCATTTATCCCC
Found at i:83385 original size:17 final size:17
Alignment explanation
Indices: 83365--83398 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83355 TAAAATTACC
83365 CAACCATTAGAAAGATA
1 CAACCATTAGAAAGATA
*
83382 CAACCTTTAGAAAGATA
1 CAACCATTAGAAAGATA
83399 AAGAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.21
Consensus pattern (17 bp):
CAACCATTAGAAAGATA
Found at i:86161 original size:52 final size:52
Alignment explanation
Indices: 86026--86473 Score: 722
Period size: 52 Copynumber: 8.6 Consensus size: 52
86016 TCGCTCTCTA
*
86026 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAATT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAA-T
* * * *
86079 TTTTTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGGGTCTGTCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
86131 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
* *
86183 TTTCTTCA-GGACTAGAACTCGAACAATAATCTTCCTATGAGACTGTCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
* *
86234 TTTCTTCAGGGACTAGAACTCGAAAAATAATCTTCCTAC-AGGTCTGCCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGA-GACTGCCCAAT
* * * *
86286 TTTTTTCAAGGACTAGAACTCGAACAATAATCTTCCTACGGGTCTGCCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
86338 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
* *
86390 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGGGTCTGCCCAAT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
86442 TTTCTTCAGGGACTAGAACTCGAAC-ATAATCT
1 TTTCTTCAGGGACTAGAACTCGAACAATAATCT
86474 CCAACGATCG
Statistics
Matches: 367, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
51 57 0.16
52 264 0.72
53 46 0.13
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (52 bp):
TTTCTTCAGGGACTAGAACTCGAACAATAATCTTCCTACGAGACTGCCCAAT
Found at i:86528 original size:55 final size:55
Alignment explanation
Indices: 86459--86744 Score: 413
Period size: 55 Copynumber: 5.3 Consensus size: 55
86449 AGGGACTAGA
*
86459 ACTCGAACATAATCTCCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAAC--AATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
86516 ACTCGAGCAATCTCCAACAATCGCGTCTGCCCCCTATTTATTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
86571 ACTCGAACAATCTTC-ACGATCGCGTCTGCCCCCTA-TTCTTC--AGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
86622 A-TC-CACAATCTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
86675 ACTCGAATAATCTTCAACGATCGCGTCTGCCCCCAATTTCTTCAAAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
86730 ACTCGAACAATCTTC
1 ACTCGAACAATCTTC
86745 TTTTGCTTCA
Statistics
Matches: 206, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
49 9 0.04
50 20 0.10
51 17 0.08
53 16 0.08
54 21 0.10
55 116 0.56
57 7 0.03
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (55 bp):
ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
Found at i:86656 original size:104 final size:108
Alignment explanation
Indices: 86459--86744 Score: 418
Period size: 104 Copynumber: 2.6 Consensus size: 108
86449 AGGGACTAGA
* *
86459 ACTCGAACATAATCTCCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAGC
1 ACTCGAAC--AATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCA-AGAGTATAAGACTC-AAC
*
86524 AATCTCCAACAATCGCGTCTGCCCCCTATTTATTCAGAGAGTATAAG
62 AATCTTCAACAATCGCGTCTGCCCCCTATTTATTCAGAGAGTATAAG
*
86571 ACTCGAACAATCTTC-ACGATCGCGTCTGCCCCCTA-TTCTTC-AGAGTATAAGA-TCCACAATC
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAAGAGTATAAGACTCAACAATC
* *
86632 TTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
66 TTCAACAATCGCGTCTGCCCCCTATTTATTCAGAGAGTATAAG
* *
86675 ACTCGAATAATCTTCAACGATCGCGTCTGCCCCCAATTTCTTCAAAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTC-AAGAGTATAAGACTC-AACAA
86740 TCTTC
64 TCTTC
86745 TTTTGCTTCA
Statistics
Matches: 159, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
104 59 0.37
105 21 0.13
106 17 0.11
108 17 0.11
109 22 0.14
110 15 0.09
112 8 0.05
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (108 bp):
ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAAGAGTATAAGACTCAACAATC
TTCAACAATCGCGTCTGCCCCCTATTTATTCAGAGAGTATAAG
Found at i:87912 original size:8 final size:8
Alignment explanation
Indices: 87896--88032 Score: 93
Period size: 8 Copynumber: 16.8 Consensus size: 8
87886 TGAACCCCCC
87896 TTTTATTT
1 TTTTATTT
*
87904 TTTTGTTT
1 TTTTATTT
*
87912 TTTTCTTCT
1 TTTTATT-T
*
87921 TTTT-TTC
1 TTTTATTT
* *
87928 TTCT-TCT
1 TTTTATTT
87935 TTTTATTT
1 TTTTATTT
87943 TTTTATTT
1 TTTTATTT
*
87951 TTTCCATTT
1 TTT-TATTT
87960 TTTCTATTT
1 TTT-TATTT
*
87969 TTATATTT
1 TTTTATTT
*
87977 CATTT-TTT
1 -TTTTATTT
*
87985 TTTCATTT
1 TTTTATTT
87993 TTTTATTTT
1 TTTTA-TTT
88002 TTTTCATTT
1 TTTT-ATTT
88011 TTTTCA-TT
1 TTTT-ATTT
*
88019 TTTCATTT
1 TTTTATTT
88027 TTTTAT
1 TTTTAT
88033 CTTTAAGCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
7 10 0.10
8 55 0.53
9 37 0.36
10 1 0.01
ACGTcount: A:0.10, C:0.09, G:0.01, T:0.80
Consensus pattern (8 bp):
TTTTATTT
Found at i:87923 original size:11 final size:11
Alignment explanation
Indices: 87909--87938 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
87899 TATTTTTTTG
87909 TTTTTTTCTTC
1 TTTTTTTCTTC
87920 TTTTTTTCTTC
1 TTTTTTTCTTC
87931 TTCTTTTT
1 TT-TTTTT
87939 ATTTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTCTTC
Found at i:87952 original size:9 final size:9
Alignment explanation
Indices: 87896--88021 Score: 71
Period size: 9 Copynumber: 13.1 Consensus size: 9
87886 TGAACCCCCC
87896 TTTTATTTT
1 TTTTATTTT
87905 TTTGT-TTTT
1 TTT-TATTTT
*
87914 TTCTTCTTTT
1 TT-TTATTTT
87924 TTTCT-TCTTCT
1 TTT-TAT-TT-T
87935 TTTTA-TTT
1 TTTTATTTT
87943 TTTTATTTT
1 TTTTATTTT
**
87952 TTCCATTTT
1 TTTTATTTT
*
87961 TTCTATTTTT
1 TTTTA-TTTT
87971 ATATTTCATTTT
1 -T-TTT-ATTTT
87983 TTTT-TCATTT
1 TTTTAT--TTT
87993 TTTTATTTT
1 TTTTATTTT
88002 TTTTCATTTT
1 TTTT-ATTTT
*
88012 TTTCATTTT
1 TTTTATTTT
88021 T
1 T
88022 CATTTTTTTA
Statistics
Matches: 96, Mismatches: 5, Indels: 32
0.72 0.04 0.24
Matches are distributed among these distances:
8 7 0.07
9 41 0.43
10 34 0.35
11 7 0.07
12 6 0.06
13 1 0.01
ACGTcount: A:0.10, C:0.10, G:0.01, T:0.80
Consensus pattern (9 bp):
TTTTATTTT
Found at i:87961 original size:18 final size:17
Alignment explanation
Indices: 87940--88030 Score: 89
Period size: 18 Copynumber: 5.4 Consensus size: 17
87930 CTTCTTTTTA
87940 TTTTTTTATTTTTTCCAT
1 TTTTTTTATTTTTT-CAT
*
87958 TTTTTCTATTTTTAT-AT
1 TTTTTTTATTTTT-TCAT
**
87975 TTCATTT-TTTTTTCAT
1 TTTTTTTATTTTTTCAT
*
87991 TTTTTTATTTTTTTTCAT
1 TTTTTT-TATTTTTTCAT
*
88009 TTTTTTCA-TTTTTCAT
1 TTTTTTTATTTTTTCAT
88025 TTTTTT
1 TTTTTT
88031 ATCTTTAAGC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
15 1 0.02
16 25 0.41
17 7 0.11
18 27 0.44
19 1 0.02
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTATTTTTTCAT
Found at i:88021 original size:34 final size:32
Alignment explanation
Indices: 87896--88032 Score: 113
Period size: 34 Copynumber: 4.2 Consensus size: 32
87886 TGAACCCCCC
* *
87896 TTTTA-TTTTTTTGTTTTTTTCTTCTTT--TTT
1 TTTTATTTTTTTTATTTTTTTATT-TTTCATTT
* * *
87926 TCTTCTTCTTTTTATTTTTTTATTTTTTCCATTT
1 TTTTATTTTTTTTATTTTTTTA-TTTTT-CATTT
*
87960 TTTCTA-TTTTTATATTTCATTTT-TTTTTCATTT
1 TTT-TATTTTTTTTATTT--TTTTATTTTTCATTT
87993 TTTTATTTTTTTTCATTTTTTTCATTTTTCATTT
1 TTTTATTTTTTTT-ATTTTTTT-ATTTTTCATTT
88027 TTTTAT
1 TTTTAT
88033 CTTTAAGCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
30 3 0.04
31 16 0.19
32 8 0.09
33 14 0.16
34 39 0.46
35 1 0.01
36 4 0.05
ACGTcount: A:0.10, C:0.09, G:0.01, T:0.80
Consensus pattern (32 bp):
TTTTATTTTTTTTATTTTTTTATTTTTCATTT
Found at i:88029 original size:9 final size:9
Alignment explanation
Indices: 87911--88030 Score: 78
Period size: 9 Copynumber: 13.8 Consensus size: 9
87901 TTTTTTTGTT
87911 TTTTTCTTC-
1 TTTTT-TTCA
*
87920 TTTTTTTCT
1 TTTTTTTCA
*
87929 TCTTCTTTTTA
1 T-TT-TTTTCA
87940 TTTTTTT-A
1 TTTTTTTCA
*
87948 TTTTTTCCA
1 TTTTTTTCA
87957 -TTTTTTCTA
1 TTTTTTTC-A
*
87966 TTTTTAT-A
1 TTTTTTTCA
**
87974 TTTCATT--
1 TTTTTTTCA
87981 TTTTTTTCA
1 TTTTTTTCA
87990 TTTTTTT-A
1 TTTTTTTCA
87998 TTTTTTTTCA
1 -TTTTTTTCA
88008 TTTTTTTCA
1 TTTTTTTCA
88017 --TTTTTCA
1 TTTTTTTCA
88024 TTTTTTT
1 TTTTTTT
88031 ATCTTTAAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
7 12 0.13
8 22 0.25
9 40 0.45
10 10 0.11
11 5 0.06
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:94459 original size:17 final size:17
Alignment explanation
Indices: 94439--94472 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94429 TAAAATTACC
94439 CAACCATTAGAAAGATA
1 CAACCATTAGAAAGATA
*
94456 CAACCTTTAGAAAGATA
1 CAACCATTAGAAAGATA
94473 AAGAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.21
Consensus pattern (17 bp):
CAACCATTAGAAAGATA
Found at i:96852 original size:3 final size:3
Alignment explanation
Indices: 96834--96916 Score: 98
Period size: 3 Copynumber: 27.7 Consensus size: 3
96824 CAAATAGTTT
*
96834 TAA TAAA TAT TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * *
96881 T-A TAA TAA TAA TAA TAA TTA TTA TTA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
96917 TTTATATCCC
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
2 4 0.06
3 62 0.86
4 6 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:96890 original size:29 final size:29
Alignment explanation
Indices: 96834--96916 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
96824 CAAATAGTTT
*
96834 TAATAAATATTAATAATAATAATAAATAATAA
1 TAAT-AATAATAATAAT-ATAAT-AATAATAA
96866 TAATAATAATAATAATATAATAATAATAA
1 TAATAATAATAATAATATAATAATAATAA
* * *
96895 TAATTATTATTATAATATAATA
1 TAATAATAATAATAATATAATA
96917 TTTATATCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
29 27 0.57
30 5 0.11
31 11 0.23
32 4 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (29 bp):
TAATAATAATAATAATATAATAATAATAA
Found at i:101624 original size:49 final size:54
Alignment explanation
Indices: 101571--101669 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 54
101561 TTTTTAATTT
*
101571 TATAAACAAATTAT-ATAA-ATTTTA-TA-AATTTAAAAT-TTAAAAAAATATA
1 TATAAACAAATTATAATAATATTATAGTAGAATTTAAAATCTTAAAAAAATATA
** *
101620 TATAAATTAATTATAATAATATTATAGTAGAATTTAAATTCTTAAAAAAA
1 TATAAACAAATTATAATAATATTATAGTAGAATTTAAAATCTTAAAAAAA
101670 CAAATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
49 12 0.29
50 4 0.10
51 5 0.12
52 2 0.05
53 9 0.22
54 9 0.22
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (54 bp):
TATAAACAAATTATAATAATATTATAGTAGAATTTAAAATCTTAAAAAAATATA
Found at i:101819 original size:18 final size:18
Alignment explanation
Indices: 101793--101831 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
101783 CATTCCTAGA
*
101793 AATCTTATTCCCACCGGT
1 AATCATATTCCCACCGGT
* *
101811 AATCATATTCTCACTGGT
1 AATCATATTCCCACCGGT
101829 AAT
1 AAT
101832 TTTACATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (18 bp):
AATCATATTCCCACCGGT
Found at i:104674 original size:21 final size:23
Alignment explanation
Indices: 104645--104702 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
104635 ATATCAAATT
*
104645 ATATGAAAAAATTAAT-AAAA-A
1 ATATTAAAAAATTAATGAAAACA
104666 ATATTAAAAAA-T-ATGAAAACA
1 ATATTAAAAAATTAATGAAAACA
104687 AT-TTACAAAAATTAAT
1 ATATTA-AAAAATTAAT
104703 CCTAAATGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 2 0.06
20 8 0.26
21 18 0.58
22 1 0.03
23 2 0.06
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (23 bp):
ATATTAAAAAATTAATGAAAACA
Found at i:108355 original size:42 final size:42
Alignment explanation
Indices: 108290--108389 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
108280 TGGATGACCC
* * *
108290 GAAGGTCTTA-TCATCTTGGTCGAAAGACTTA-TAAATGGCCT
1 GAAGGACTTACTCATCATGCTCGAAAGACTTACT-AATGGCCT
* * *
108331 GAATGACTTACTCATCATGCTCGAAAGACTTACTGATGGCTT
1 GAAGGACTTACTCATCATGCTCGAAAGACTTACTAATGGCCT
*
108373 GAAGGAATTACTCATCA
1 GAAGGACTTACTCATCA
108390 AAAAACCCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 8 0.16
42 40 0.82
43 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (42 bp):
GAAGGACTTACTCATCATGCTCGAAAGACTTACTAATGGCCT
Found at i:108779 original size:57 final size:53
Alignment explanation
Indices: 108701--108842 Score: 146
Period size: 57 Copynumber: 2.6 Consensus size: 53
108691 TTCTTAGTTG
* * *
108701 TCATTAAGGAACCCCTAAAAATTAGGCTTAGCTTTCTTGAAAATTC-TTTGGAGATAA
1 TCATTAA-GAAACCCTAAAAATTAGGCTTAGCTTT-TTAAAAACTCATTT-GA-A-AA
* * *
108758 TCATTAAGAAATCCCTGAAAATCAAGCTTAG-TTTTTAAAAACTCATTTGAAAA
1 TCATTAAGAAA-CCCTAAAAATTAGGCTTAGCTTTTTAAAAACTCATTTGAAAA
*
108811 -CATCAAGAAACCCTAAAAATTAGGCTTAGCTT
1 TCATTAAGAAACCCTAAAAATTAGGCTTAGCTT
108843 CTTATTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
51 16 0.22
52 11 0.15
53 2 0.03
54 1 0.01
55 10 0.14
56 9 0.12
57 23 0.32
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (53 bp):
TCATTAAGAAACCCTAAAAATTAGGCTTAGCTTTTTAAAAACTCATTTGAAAA
Found at i:109998 original size:4 final size:4
Alignment explanation
Indices: 109985--110027 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
109975 ATAAATTTTA
*
109985 TTTC -TTC TTTC TTTC TTTC TTTC TTTC TTTTC CTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTT
110028 TTCTTTTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 28 0.80
5 4 0.11
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:110021 original size:13 final size:13
Alignment explanation
Indices: 109993--110041 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
109983 TATTTCTTCT
*
109993 TTCTTTC-TTTCT
1 TTCTTTCTTTTCC
110005 TTCTTTCTTTTCC
1 TTCTTTCTTTTCC
*
110018 TTCTTTCTTTTTC
1 TTCTTTCTTTTCC
110031 TT-TTCTCTTTT
1 TTCTT-TCTTTT
110042 TTTTCCTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 9 0.27
13 24 0.73
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTCTTTCTTTTCC
Found at i:110042 original size:13 final size:13
Alignment explanation
Indices: 110000--110059 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
109990 TCTTTCTTTC
*
110000 TTTCTTTCTTTCTT
1 TTTCTTT-TCTCTT
*
110014 TTCCTTCTT-TCTT
1 TTTCTT-TTCTCTT
110027 TTTCTTTTCTCTT
1 TTTCTTTTCTCTT
* *
110040 TTT-TTTCCTTTT
1 TTTCTTTTCTCTT
110052 TTTCTTTT
1 TTTCTTTT
110060 TTTTCTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 12 0.32
13 19 0.50
14 6 0.16
15 1 0.03
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTCTTTTCTCTT
Found at i:110057 original size:18 final size:18
Alignment explanation
Indices: 110018--110082 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
110008 TTTCTTTTCC
110018 TTCTTTCTTTTT-C-TTTT
1 TTCTTT-TTTTTCCTTTTT
*
110035 CTCTTTTTTTTCCTTTTT
1 TTCTTTTTTTTCCTTTTT
*
110053 TTCTTTTTTTTCTATTTTT
1 TTCTTTTTTTTC-CTTTTT
110072 TTCTATTTTTT
1 TTCT-TTTTTT
110083 ATGTTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 5 0.12
17 6 0.15
18 15 0.37
19 9 0.22
20 6 0.15
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTCTTTTTTTTCCTTTTT
Found at i:110061 original size:8 final size:8
Alignment explanation
Indices: 109989--110082 Score: 59
Period size: 8 Copynumber: 11.2 Consensus size: 8
109979 ATTTTATTTC
*
109989 TTCTTTCT
1 TTCTTTTT
*
109997 TTCTTTCT
1 TTCTTTTT
110005 TTCTTTCTT
1 TTCTTT-TT
* *
110014 TTCCTTCT
1 TTCTTTTT
110022 TTC--TTT
1 TTCTTTTT
110028 TTCTTTTCT
1 TTCTTTT-T
110037 CTT-TTTTT
1 -TTCTTTTT
*
110045 TCCTTTTT
1 TTCTTTTT
110053 TTCTTTTTT
1 TTC-TTTTT
110062 TTCTATTTTT
1 TTC--TTTTT
110072 TTCTATTTT
1 TTCT-TTTT
110081 TT
1 TT
110083 ATGTTTTTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 17
0.74 0.07 0.18
Matches are distributed among these distances:
6 5 0.07
7 1 0.01
8 29 0.41
9 25 0.36
10 10 0.14
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (8 bp):
TTCTTTTT
Found at i:110061 original size:17 final size:17
Alignment explanation
Indices: 109989--110082 Score: 57
Period size: 19 Copynumber: 5.1 Consensus size: 17
109979 ATTTTATTTC
* *
109989 TTCTTTCTTT-CTTTCT
1 TTCTTTTTTTCCTTTTT
110005 TTCTTTCTTTTCCTTCTTT
1 TTCTTT-TTTTCCTT-TTT
110024 CTT-TTTCTTTTCTCTTTTTT
1 -TTCTTT-TTTTC-C-TTTTT
*
110044 TTCCTTTTTTTCTTTTTT
1 TT-CTTTTTTTCCTTTTT
*
110062 TTCTATTTTTTTCTATTTT
1 TTCT-TTTTTTCCT-TTTT
110081 TT
1 TT
110083 ATGTTTTTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
16 6 0.10
17 5 0.08
18 17 0.27
19 19 0.30
20 11 0.17
21 5 0.08
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (17 bp):
TTCTTTTTTTCCTTTTT
Found at i:110076 original size:10 final size:10
Alignment explanation
Indices: 110021--110096 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 10
110011 CTTTTCCTTC
*
110021 TTTCTTTTTCT
1 TTTCTATTT-T
*
110032 TTTCTCTTTT
1 TTTCTATTTT
*
110042 TTT-TCCTTTT
1 TTTCT-ATTTT
110052 TTTCT-TTTT
1 TTTCTATTTT
110061 TTTCTATTTT
1 TTTCTATTTT
110071 TTTCTA-TTT
1 TTTCTATTTT
* *
110080 TTTATGTTTT
1 TTTCTATTTT
110090 TTTCTAT
1 TTTCTAT
110097 ATCTCTTCTT
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
9 17 0.30
10 30 0.54
11 9 0.16
ACGTcount: A:0.05, C:0.13, G:0.01, T:0.80
Consensus pattern (10 bp):
TTTCTATTTT
Found at i:110089 original size:19 final size:19
Alignment explanation
Indices: 110048--110096 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
110038 TTTTTTTTCC
* *
110048 TTTTTTTCTTTTTTTTCTA
1 TTTTTTTCTATTTTTTATA
*
110067 TTTTTTTCTATTTTTTATG
1 TTTTTTTCTATTTTTTATA
110086 TTTTTTTCTAT
1 TTTTTTTCTAT
110097 ATCTCTTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTTCTATTTTTTATA
Found at i:110089 original size:29 final size:28
Alignment explanation
Indices: 110004--110096 Score: 86
Period size: 28 Copynumber: 3.2 Consensus size: 28
109994 TCTTTCTTTC
*
110004 TTTCT-TTCTTTTCCTTCTTTCTT-TTTCTT
1 TTTCTATTTTTTTCCTT-TTT-TTATTT-TT
*
110033 TTCTCT-TTTTTTTCCTTTTTTTCTTTTT
1 TT-TCTATTTTTTTCCTTTTTTTATTTTT
110061 TTTCTATTTTTTT-CTATTTTTTATGTTTT
1 TTTCTATTTTTTTCCT-TTTTTTAT-TTTT
110090 TTTCTAT
1 TTTCTAT
110097 ATCTCTTCTT
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
27 5 0.09
28 20 0.35
29 19 0.33
30 13 0.23
ACGTcount: A:0.04, C:0.16, G:0.01, T:0.78
Consensus pattern (28 bp):
TTTCTATTTTTTTCCTTTTTTTATTTTT
Found at i:112339 original size:50 final size:50
Alignment explanation
Indices: 112245--112348 Score: 131
Period size: 50 Copynumber: 2.1 Consensus size: 50
112235 GTTTGACCAT
* ** *
112245 TCAATTATTACTCATCTTTATTTTGATCATTGATGTTTTGATTTAGTCAA
1 TCAATTATTACTCATCTTCATTTTGATCATTGATGTTTCAATTTAATCAA
*
112295 TCAATTATTACTCAAT-TTCATTTTGA-CTATTGATGTTTCAATTTAATTAA
1 TCAATTATTACTC-ATCTTCATTTTGATC-ATTGATGTTTCAATTTAATCAA
112345 TCAA
1 TCAA
112349 ACCACTTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 1 0.02
50 44 0.94
51 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (50 bp):
TCAATTATTACTCATCTTCATTTTGATCATTGATGTTTCAATTTAATCAA
Found at i:114283 original size:44 final size:44
Alignment explanation
Indices: 114023--114270 Score: 361
Period size: 44 Copynumber: 5.6 Consensus size: 44
114013 CAAGATGGCA
* *
114023 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCTTCTACT
1 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
*
114067 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTTCT
1 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
* * *
114111 ATGTGCAAGGGTAAGTCTTTACCATTACCGTAGGCTCCTCTGTT
1 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
* * * **
114155 ACGTGCAAGGTTAAGTCCTTATCGTTACCACAGGCTCCTCTGCT
1 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
* *
114199 ACGTGCAAGTGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
1 ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
* *
114243 ATGTGTAAGTGTAAGTCCTTACCGTTAC
1 ATGTGCAAGGGTAAGTCCTTACCGTTAC
114271 TGCTGACTCC
Statistics
Matches: 183, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 183 1.00
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (44 bp):
ATGTGCAAGGGTAAGTCCTTACCGTTACCGTAGGCTCCTCTGCT
Found at i:120909 original size:18 final size:16
Alignment explanation
Indices: 120877--121011 Score: 61
Period size: 16 Copynumber: 8.6 Consensus size: 16
120867 AAAAATACAC
*
120877 AAAA-AGAAAGCAAAA
1 AAAAGAGAAAGGAAAA
120892 AAAAGAATGAAAGGAAAA
1 AAAAG-A-GAAAGGAAAA
* *
120910 GAAAGAGAAA-GAGAA
1 AAAAGAGAAAGGAAAA
* **
120925 AAAAGAGTAAAAGAGGA
1 AAAAGAG-AAAGGAAAA
* * *
120942 AAAAGAAAAAAGAGAA
1 AAAAGAGAAAGGAAAA
120958 AAAAGAGAAA--AAAGA
1 AAAAGAGAAAGGAAA-A
*
120973 AGAA-A-AAA-G-AAA
1 AAAAGAGAAAGGAAAA
*
120985 AAAAGAGAAAAGAAAA
1 AAAAGAGAAAGGAAAA
*
121001 AGAAAAAGAAA
1 A-AAAGAGAAA
121012 ATAAGACATC
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
12 4 0.04
13 6 0.06
14 6 0.06
15 19 0.20
16 28 0.29
17 20 0.21
18 13 0.14
ACGTcount: A:0.76, C:0.01, G:0.21, T:0.01
Consensus pattern (16 bp):
AAAAGAGAAAGGAAAA
Found at i:120925 original size:17 final size:16
Alignment explanation
Indices: 120900--121012 Score: 73
Period size: 15 Copynumber: 7.3 Consensus size: 16
120890 AAAAAAGAAT
*
120900 GAAAGGAAAAGAAAGA
1 GAAAAGAAAAGAAAGA
120916 G-AAAGAGAAA-AAAGA
1 GAAAAGA-AAAGAAAGA
*
120931 GTAAAAGAGGAA-AAAGA
1 G-AAAAGA-AAAGAAAGA
*
120948 AAAAAGAGAAA-AAAGA
1 GAAAAGA-AAAGAAAGA
120964 G--AA-AAAAG-AAGA
1 GAAAAGAAAAGAAAGA
*
120976 AAAAAGAAAA-AAAGA
1 GAAAAGAAAAGAAAGA
*
120991 GAAAAGAAAAAGAAAAA
1 GAAAAG-AAAAGAAAGA
121008 GAAAA
1 GAAAA
121013 TAAGACATCA
Statistics
Matches: 79, Mismatches: 8, Indels: 19
0.75 0.08 0.18
Matches are distributed among these distances:
12 7 0.09
13 1 0.01
14 4 0.05
15 23 0.29
16 22 0.28
17 22 0.28
ACGTcount: A:0.76, C:0.00, G:0.23, T:0.01
Consensus pattern (16 bp):
GAAAAGAAAAGAAAGA
Found at i:120931 original size:9 final size:9
Alignment explanation
Indices: 120917--120995 Score: 103
Period size: 9 Copynumber: 9.1 Consensus size: 9
120907 AAAGAAAGAG
120917 AAAGAGAAA
1 AAAGAGAAA
*
120926 AAAGAG-TA
1 AAAGAGAAA
*
120934 AAAGAG-GA
1 AAAGAGAAA
120942 AAA-AGAAA
1 AAAGAGAAA
120950 AAAGAGAAA
1 AAAGAGAAA
120959 AAAGAGAAA
1 AAAGAGAAA
120968 AAAGAAGAAA
1 AAAG-AGAAA
120978 AAAGA-AAA
1 AAAGAGAAA
120986 AAAGAGAAA
1 AAAGAGAAA
120995 A
1 A
120996 GAAAAAGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
7 2 0.03
8 23 0.37
9 29 0.46
10 9 0.14
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (9 bp):
AAAGAGAAA
Found at i:120942 original size:35 final size:35
Alignment explanation
Indices: 120902--120995 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 35
120892 AAAAGAATGA
*
120902 AAGGAAAAGAAAGAGAAAGAGAAAAAAGAG-TAAAAG
1 AAGGAAAAGAAA-A-AAAGAGAAAAAAGAGAAAAAAG
120938 -AGGAAAA-AGAAAAAAGAGAAAAAAGAGAAAAAAG
1 AAGGAAAAGA-AAAAAAGAGAAAAAAGAGAAAAAAG
*
120972 AAGAAAAAAGAAAAAAAGAGAAAA
1 AAG-GAAAAGAAAAAAAGAGAAAA
120996 GAAAAAGAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
33 15 0.29
34 7 0.14
35 11 0.22
36 17 0.33
37 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.23, T:0.01
Consensus pattern (35 bp):
AAGGAAAAGAAAAAAAGAGAAAAAAGAGAAAAAAG
Found at i:120948 original size:50 final size:49
Alignment explanation
Indices: 120917--121011 Score: 106
Period size: 52 Copynumber: 1.9 Consensus size: 49
120907 AAAGAAAGAG
**
120917 AAAG-AGAAAAAAGAGTAAAAGAGGAAAAAGAAAAAAGAGAAAA-AAGAGAAA
1 AAAGAAGAAAAAAGAAAAAAAGA-GAAAAAG-AAAAAG-GAAAAGAA-AGAAA
*
120968 AAAGAAGAAAAAAGAAAAAAAGAG-AAAAGAAAAAGAAAAAGAAA
1 AAAGAAGAAAAAAGAAAAAAAGAGAAAAAGAAAAAGGAAAAGAAA
121012 ATAAGACATC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
48 5 0.13
49 8 0.21
50 5 0.13
51 5 0.13
52 16 0.41
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (49 bp):
AAAGAAGAAAAAAGAAAAAAAGAGAAAAAGAAAAAGGAAAAGAAAGAAA
Found at i:120951 original size:25 final size:24
Alignment explanation
Indices: 120938--121001 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 24
120928 AGAGTAAAAG
*
120938 AGGAAAAAGAAAAAAGAGAAAAAAG
1 AGGAAAAAGAAAAAA-AGAGAAAAG
* *
120963 AGAAAAAAGAAGAAAAA-AGAAAAA
1 AGGAAAAAGAA-AAAAAGAGAAAAG
*
120987 AAGAGAAAAGAAAAA
1 AGGA-AAAAGAAAAA
121002 GAAAAAGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
24 10 0.31
25 18 0.56
26 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (24 bp):
AGGAAAAAGAAAAAAAGAGAAAAG
Found at i:120953 original size:7 final size:7
Alignment explanation
Indices: 120911--121017 Score: 69
Period size: 7 Copynumber: 14.7 Consensus size: 7
120901 AAAGGAAAAG
120911 AAAGAGAA
1 AAAGA-AA
*
120919 AGAGAAA
1 AAAGAAA
120926 AAAGAGTAA
1 AAAGA--AA
*
120935 AAGAGGAA
1 AA-AGAAA
120943 AAAGAAA
1 AAAGAAA
120950 AAAGAGAA
1 AAAGA-AA
*
120958 AAA-AGAG
1 AAAGA-AA
120965 AAA-AAA
1 AAAGAAA
*
120971 GAAGAAA
1 AAAGAAA
120978 AAAGAAAA
1 AAAG-AAA
*
120986 AAAGAGA
1 AAAGAAA
120993 AAAG-AA
1 AAAGAAA
120999 AAAG-AA
1 AAAGAAA
121005 AAAGAAA
1 AAAGAAA
121012 ATAAGA
1 A-AAGA
121018 CATCAAACAC
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
6 14 0.17
7 37 0.46
8 24 0.30
9 4 0.05
10 2 0.02
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:120987 original size:28 final size:29
Alignment explanation
Indices: 120901--121012 Score: 110
Period size: 28 Copynumber: 4.0 Consensus size: 29
120891 AAAAAGAATG
* *
120901 AAAG-GAAAAGAAAGAG-AAAGAGAAAAA
1 AAAGAGAAAAGAAAAAGAAAAAAGAAAAA
* *
120928 AGAGTA-AAAGAGGAAAAAGAAAAAAGAGAAA
1 AAAG-AGAAA-A-GAAAAAGAAAAAAGAAAAA
*
120959 AAAGAGAAAA-AAGAAGAAAAAAG-AAAA
1 AAAGAGAAAAGAAAAAGAAAAAAGAAAAA
120986 AAAGAGAAAAGAAAAAG-AAAAAGAAAA
1 AAAGAGAAAAGAAAAAGAAAAAAGAAAA
121013 TAAGACATCA
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
27 22 0.32
28 23 0.33
29 1 0.01
30 8 0.12
31 15 0.22
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (29 bp):
AAAGAGAAAAGAAAAAGAAAAAAGAAAAA
Found at i:121012 original size:25 final size:24
Alignment explanation
Indices: 120911--121012 Score: 73
Period size: 24 Copynumber: 4.1 Consensus size: 24
120901 AAAGGAAAAG
* * * *
120911 AAAGAGAAAGAGAAA-AAAGAGTA
1 AAAGAGAAAAAAAAAGAAAAAGAA
* *
120934 AAAGAGGAAAAAGAAA-AAAGAGAAA
1 AAAGA-GAAAAAAAAAGAAAAAG-AA
*
120959 AAAGAGAAAAAAGAAGAAAAAAGAAAA
1 AAAGAGAAAAAAAAAG-AAAAAG--AA
120986 AAAGAGAAAAGAAAAAGAAAAAGAA
1 AAAGAGAAAA-AAAAAGAAAAAGAA
121011 AA
1 AA
121013 TAAGACATCA
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
23 5 0.07
24 23 0.34
25 10 0.15
26 5 0.07
27 19 0.28
28 5 0.07
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (24 bp):
AAAGAGAAAAAAAAAGAAAAAGAA
Found at i:123391 original size:42 final size:42
Alignment explanation
Indices: 123344--123441 Score: 178
Period size: 42 Copynumber: 2.3 Consensus size: 42
123334 GAGCCATCAG
123344 TAAGTCTTTCGAGCGTGATGCTTAAATCCTTCAAGTCATCTA
1 TAAGTCTTTCGAGCGTGATGCTTAAATCCTTCAAGTCATCTA
* *
123386 TAAGTCTTTTGAGCGTGATGCTTAAATCCTTCGAGTCATCTA
1 TAAGTCTTTCGAGCGTGATGCTTAAATCCTTCAAGTCATCTA
123428 TAAGTCTTTCGAGC
1 TAAGTCTTTCGAGC
123442 AAGATGATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (42 bp):
TAAGTCTTTCGAGCGTGATGCTTAAATCCTTCAAGTCATCTA
Found at i:123440 original size:20 final size:20
Alignment explanation
Indices: 123377--123440 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
123367 AAATCCTTCA
*
123377 AGTCATCTATAAGTCTTTTG
1 AGTCATCTATAAGTCTTTCG
* * *
123397 AGCGTGATGCT-TAAATCCTTCG
1 A--GTCAT-CTATAAGTCTTTCG
123419 AGTCATCTATAAGTCTTTCG
1 AGTCATCTATAAGTCTTTCG
123439 AG
1 AG
123441 CAAGATGATA
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
22 13 0.39
23 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (20 bp):
AGTCATCTATAAGTCTTTCG
Found at i:123758 original size:142 final size:139
Alignment explanation
Indices: 123449--123809 Score: 472
Period size: 142 Copynumber: 2.6 Consensus size: 139
123439 AGCAAGATGA
*
123449 TAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCATGTTGTTTTCAACATTTCCTTTTCTCGATT
1 TAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAACATTTCCTTTTCTCGATT
* ** * *
123514 CACAACACTTTGAATCAGCAACGCCTTACCAGAGGGGACATTTCCTTTTGCTCATTCACACACTT
66 CAC-ACACTTCGAATCAGCAACGCCCCACCAGAGGGAACATTTCCTATTGCTCATTCACACACTT
123579 CGAATCAGCT
130 CGAATCAGCT
* * ** * *
123589 TAAGTCTTTCGGGCCATCCATAAGACCTTCAGTAATGATGTTTTCAACATTTACTTTTCTCAATT
1 TAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAACATTTCCTTTTCTCGATT
* * *
123654 CACA-ACTTCGTATCAGTAATGCCCCACCAGAGAGGTTAACATTTCCTATTGCTCGATTCACACA
66 CACACACTTCGAATCAGCAACGCCCCACCAGAG-GG--AACATTTCCTATTGCTC-ATTCACACA
*
123718 CTTTGAATCAGCT
127 CTTCGAATCAGCT
* * * * * *
123731 TAAGTCCTTCAGGCCATTCATAAGACCTTCGGGCAGGGTGTTTTCAACATTTCCTTTGCCCGATT
1 TAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAACATTTCCTTTTCTCGATT
123796 CACACACTTCGAAT
66 CACACACTTCGAAT
123810 TGGCTTAAGT
Statistics
Matches: 187, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
138 22 0.12
139 3 0.02
140 61 0.33
141 15 0.08
142 78 0.42
143 8 0.04
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (139 bp):
TAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAACATTTCCTTTTCTCGATT
CACACACTTCGAATCAGCAACGCCCCACCAGAGGGAACATTTCCTATTGCTCATTCACACACTTC
GAATCAGCT
Found at i:123915 original size:84 final size:84
Alignment explanation
Indices: 123691--123916 Score: 296
Period size: 84 Copynumber: 2.7 Consensus size: 84
123681 CAGAGAGGTT
* * *
123691 AACATTTCCTATTGCTCGATTCACACACTTTGAATCAGCTTAAGTC-CTTCAGGCCATTCATAAG
1 AACATTTCCT-TTGCTCGATTCACACAC-TTGAATCAGCTTAAGTCAATTCGGGCCATCCATAAG
*
123755 ACCTTCGGGCAGGGTGTTTTC
64 ACCTTCGGGCAGGATGTTTTC
* ** *
123776 AACATTTCCTTTGCCCGATTCACACACTTCGAATTGGCTTAAGT-AATTCGAGCCATCCATAAGA
1 AACATTTCCTTTGCTCGATTCACACACTT-GAATCAGCTTAAGTCAATTCGGGCCATCCATAAGA
123840 CCTTCGGGCAGGATGTTTTC
65 CCTTCGGGCAGGATGTTTTC
* * *
123860 AACATTTCCTCTGCTCGATTCACAACACTTGAATCAGCATAAGTCAGTT-GGGCCATC
1 AACATTTCCTTTGCTCGATTCAC-ACACTTGAATCAGCTTAAGTCAATTCGGGCCATC
123917 AGTAAGTCTT
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
83 2 0.02
84 101 0.83
85 19 0.16
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (84 bp):
AACATTTCCTTTGCTCGATTCACACACTTGAATCAGCTTAAGTCAATTCGGGCCATCCATAAGAC
CTTCGGGCAGGATGTTTTC
Found at i:123941 original size:19 final size:19
Alignment explanation
Indices: 123917--123974 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
123907 TTGGGCCATC
123917 AGTAAGTCTTTCGAGCATG
1 AGTAAGTCTTTCGAGCATG
* * * *
123936 AGTAAGTCCTACGGGCCATC
1 AGTAAGTCTTTCGAG-CATG
*
123956 AGTAAGCCTTT-GAGCATG
1 AGTAAGTCTTTCGAGCATG
123974 A
1 A
123975 TGCTTAAATG
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
18 4 0.14
19 14 0.48
20 11 0.38
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
AGTAAGTCTTTCGAGCATG
Found at i:123961 original size:20 final size:20
Alignment explanation
Indices: 123909--123961 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
123899 TAAGTCAGTT
* *
123909 GGGCCATCAGTAAGTCTTTC
1 GGGCCATCAGTAAGTCCTAC
* *
123929 GAG-CATGAGTAAGTCCTAC
1 GGGCCATCAGTAAGTCCTAC
123948 GGGCCATCAGTAAG
1 GGGCCATCAGTAAG
123962 CCTTTGAGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (20 bp):
GGGCCATCAGTAAGTCCTAC
Found at i:125285 original size:133 final size:134
Alignment explanation
Indices: 124992--125307 Score: 336
Period size: 133 Copynumber: 2.3 Consensus size: 134
124982 ATGGTAAACC
* * **
124992 AATCAACATTTCAAATAGAGAGTTTATAATGAGAAGAACTCATCTGATGAGGGAGAAAAAGTTCA
1 AATCAACATTTCACATAGAGAGTTCATAATGAGAAGAACTCATCTGAAAAGGGAGAAAAAGTTCA
*
125057 TAATGAGAAGAACTTGTTCAACCTTCGCTCGATTAATCACATATGGAGTTGAATCAGCAACACCT
66 TAAT--GAAGAACTTGTTCAACCTTCACTCGATTAATCACATAT---GTTGAATCAGCAACACCT
125122 CGCTTGAGG
126 CGCTTGAGG
* * *
125131 AATCAACATTTC-CAATGGAGAGTTCATAATGAGAATAACTCAT-TCGAAAAAGGGAGAAGAAGT
1 AATCAACATTTCAC-ATAGAGAGTTCATAATGAGAAGAACTCATCT-G-AAAAGGGAGAAAAAGT
* * * ** ** *
125194 TCATAAT-AAGAGCTTGTTCGACCTATCACTCGATTCATGGCAT-T-TTGAATCAGTGACGCCTC
63 TCATAATGAAGAACTTGTTCAACCT-TCACTCGATTAATCACATATGTTGAATCAGCAACACCTC
125256 GCTTGAGG
127 GCTTGAGG
* * * *
125264 GATCAATATTTCACATAGAGAGTTCATAATCAGAAGAGCTCATC
1 AATCAACATTTCACATAGAGAGTTCATAATGAGAAGAACTCATC
125308 CAAAGAGTGA
Statistics
Matches: 149, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
133 58 0.39
134 1 0.01
137 16 0.11
138 15 0.10
139 39 0.26
140 20 0.13
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (134 bp):
AATCAACATTTCACATAGAGAGTTCATAATGAGAAGAACTCATCTGAAAAGGGAGAAAAAGTTCA
TAATGAAGAACTTGTTCAACCTTCACTCGATTAATCACATATGTTGAATCAGCAACACCTCGCTT
GAGG
Found at i:128201 original size:2 final size:2
Alignment explanation
Indices: 128194--128234 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
128184 GGTGTCGACA
128194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
128235 AATTTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:129219 original size:16 final size:18
Alignment explanation
Indices: 129191--129226 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
129181 TTAATAATTA
129191 TTTTATTTGTATTAT-GT
1 TTTTATTTGTATTATAGT
129208 TTTTATTT-TATTATAGT
1 TTTTATTTGTATTATAGT
129225 TT
1 TT
129227 AAATTGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.72
Consensus pattern (18 bp):
TTTTATTTGTATTATAGT
Done.