genome.fa.s7456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007456.1 Hibiscus syriacus cultivar Beakdansim tig00020433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91406

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3098--3433	137	2.5	138	82	9	424	47	8	7	36	1.62
5048--5094	3	15.7	3	86	8	69	63	0	0	36	0.94
5215--5361	45	3.3	45	91	0	231	36	17	23	23	1.95
5385--5528	45	3.2	44	89	2	198	33	18	22	25	1.97
5261--5483	122	1.8	122	87	0	329	34	17	22	24	1.96
5581--5640	31	1.9	31	93	0	102	31	20	25	23	1.98
5470--5760	79	3.8	77	76	8	304	34	18	20	26	1.96
5702--6095	45	8.8	45	91	1	621	33	18	23	24	1.97
5702--6095	178	2.2	180	91	0	639	33	18	23	24	1.97
6737--6793	23	2.5	23	85	2	80	38	12	12	36	1.80
6737--6796	22	2.7	22	85	10	77	38	11	13	36	1.81
10499--10560	32	1.9	32	90	0	97	22	16	17	43	1.87
11015--11069	8	6.8	8	85	4	65	1	16	0	81	0.77
11023--11075	17	3.2	17	91	2	81	0	18	0	81	0.70
16250--16305	28	2.1	26	83	12	69	58	0	7	33	1.25
16824--17134	135	2.3	133	84	7	405	49	7	6	36	1.56
16824--17186	133	2.7	132	83	7	419	47	7	7	36	1.61
18787--18827	3	13.7	3	100	0	82	65	0	0	34	0.93
19419--19457	21	1.9	20	84	5	51	33	15	12	38	1.85
27561--27631	35	2.0	35	86	0	97	52	4	12	30	1.58
28365--28434	14	5.1	14	80	16	85	17	14	14	54	1.72
28382--28433	24	2.2	24	96	0	95	17	13	11	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28727--28767	20	2.1	19	90	4	64	9	9	17	63	1.51
28734--28773	20	2.0	20	85	0	53	10	12	20	57	1.63
29993--30065	23	3.2	23	88	5	103	39	20	4	35	1.72
30002--30066	23	2.8	24	93	4	107	36	21	3	38	1.69
30481--30553	23	3.2	23	92	0	119	38	21	5	34	1.77
30971--31043	23	3.2	23	92	0	119	38	21	5	34	1.77
29592--31761	490	4.4	490	97	0	4084	39	10	7	41	1.69
31461--31533	23	3.2	23	92	0	119	38	23	5	32	1.78
34271--34844	183	3.1	183	92	1	956	32	16	14	36	1.89
36045--36122	9	8.7	9	81	0	84	24	33	5	37	1.78
36058--36139	36	2.3	36	91	0	128	20	32	7	39	1.80
36046--36139	12	7.8	12	86	0	98	22	32	6	38	1.79
36045--36122	6	13.0	6	84	0	84	24	33	5	37	1.78
36076--36139	18	3.6	18	82	0	65	18	32	9	39	1.83
37603--38957	200	6.9	200	89	5	2102	31	17	14	37	1.89
38351--38920	179	3.1	179	89	6	800	31	17	14	36	1.90
38530--38951	199	2.1	199	96	1	774	31	17	14	36	1.90
39064--39124	19	3.3	18	88	2	59	52	11	1	34	1.47
39076--39124	19	2.6	19	96	0	89	55	10	2	32	1.45
40905--40970	33	2.0	33	87	0	96	25	45	0	28	1.54
41004--41068	21	3.1	21	93	0	103	16	30	10	41	1.83
43093--43145	24	2.2	24	83	6	63	26	7	13	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43289--43345	20	2.9	20	80	12	64	22	15	7	54	1.65
43471--43516	20	2.3	19	89	10	74	17	17	8	56	1.65
43257--43729	181	2.6	182	87	2	657	27	16	13	42	1.86
44142--44170	14	2.0	15	93	6	51	37	0	0	62	0.96
44703--44755	3	17.7	3	100	0	106	33	0	32	33	1.58
45832--45883	3	17.3	3	100	0	104	65	0	0	34	0.93
46698--46795	35	2.8	35	84	0	124	43	28	1	26	1.61
46946--47237	148	2.0	143	91	3	476	37	7	9	45	1.65
47741--47810	35	2.0	36	91	2	115	32	0	22	44	1.53
48204--48279	20	3.8	20	71	15	59	39	0	1	59	1.06
48237--48299	22	3.1	19	79	16	56	36	0	1	61	1.05
48237--48298	23	2.9	22	88	7	83	37	0	1	61	1.06
48194--48328	59	2.2	62	82	11	154	40	0	2	57	1.17
51647--51712	14	4.7	14	80	0	78	24	0	30	45	1.53
51650--51721	7	10.3	7	73	0	63	20	1	30	47	1.59
51862--51891	14	2.1	14	93	0	51	43	0	6	50	1.28
52325--52400	35	2.2	35	85	4	100	40	19	2	36	1.66
52325--52420	35	2.7	35	82	3	95	38	23	4	33	1.74
53375--53451	35	2.2	35	85	0	100	37	1	18	42	1.58
57708--57784	24	3.2	23	89	7	109	57	1	1	40	1.15
59687--59798	31	3.5	31	68	20	93	36	19	20	23	1.95
59685--59818	67	2.0	67	91	2	216	36	20	20	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60859--60884	8	3.2	8	100	0	52	11	23	11	53	1.69
61509--61563	22	2.5	22	82	5	58	40	21	18	20	1.92
63618--63701	42	2.0	42	97	0	159	23	38	1	36	1.63
65770--65808	20	2.0	20	84	0	51	23	7	23	46	1.78
73473--73546	34	2.2	34	77	15	82	51	0	9	39	1.35
78657--78704	20	2.4	21	79	10	64	31	27	16	25	1.97
80938--80988	21	2.4	21	80	3	57	35	3	0	60	1.15
81996--82147	21	7.0	22	76	4	116	22	15	25	37	1.93
81998--82110	42	2.7	41	84	4	136	22	14	24	38	1.91
82161--82211	25	2.0	25	85	7	68	17	21	21	39	1.93
84193--84283	25	3.7	25	79	7	98	36	17	1	45	1.56
84606--84697	30	3.1	30	83	0	112	38	26	16	19	1.92
87338--87368	12	2.6	12	94	0	53	9	0	19	70	1.14
89522--89764	78	3.0	78	80	9	261	47	11	24	16	1.79
89589--89787	87	2.3	88	84	2	258	48	12	20	18	1.79
89784--89930	55	2.7	56	84	4	183	34	5	31	27	1.80
89797--89881	28	3.1	28	69	6	75	36	3	30	29	1.74
89906--89981	36	2.1	35	90	2	116	26	6	38	28	1.81
90019--90118	52	1.9	52	93	0	173	40	5	24	31	1.76
90835--90909	29	3.0	23	76	22	80	46	2	2	48	1.30
90846--90910	29	2.2	28	86	5	94	44	1	3	50	1.26

Tables:   1

The End!