genome.fa.s7457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007457.1 Hibiscus syriacus cultivar Beakdansim tig00020434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76348

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146--209	23	2.7	25	83	11	73	67	3	1	28	1.15
937--1000	26	2.4	27	82	5	78	60	0	0	39	0.97
1167--1528	45	8.1	45	90	1	523	34	18	22	24	1.96
1463--1604	76	1.9	74	88	2	212	36	16	21	25	1.94
1537--1963	45	9.5	45	90	2	642	33	18	23	24	1.96
1418--1643	121	1.9	119	87	1	335	35	16	22	25	1.94
1248--1957	300	2.3	298	86	6	962	34	17	22	24	1.96
2014--2123	44	2.8	37	85	13	134	35	20	18	25	1.95
2045--2160	44	2.6	45	90	2	189	35	18	20	25	1.95
2053--2126	25	3.2	25	63	21	70	36	16	21	25	1.94
6715--6776	32	1.9	32	93	0	106	19	17	19	43	1.88
7222--7247	10	2.6	10	100	0	52	0	26	0	73	0.84
10122--10162	15	3.0	14	86	13	59	56	12	17	14	1.68
10122--10162	7	6.0	7	86	13	59	56	12	17	14	1.68
10240--10322	43	1.9	43	90	0	130	34	24	9	31	1.87
12193--12243	2	25.5	2	100	0	102	50	0	0	49	1.00
14031--14119	18	5.0	18	75	6	74	53	1	0	44	1.07
14040--14119	9	8.8	9	76	6	63	56	1	0	42	1.07
16252--16313	25	2.6	23	82	9	79	35	4	12	46	1.64
16269--16337	25	2.8	25	95	0	120	31	4	13	50	1.60
16838--17044	101	2.0	102	93	2	353	30	19	6	43	1.76
17414--17475	30	2.0	31	81	15	74	33	9	1	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17518--17550	16	2.1	16	100	0	66	27	12	24	36	1.91
18347--18994	182	3.6	181	86	3	856	42	13	16	26	1.86
21124--21148	9	2.8	9	100	0	50	36	12	52	0	1.39
21167--21196	15	2.0	15	93	0	51	20	13	50	16	1.78
23041--23091	19	2.7	19	93	0	84	31	1	9	56	1.43
23423--24021	198	3.0	197	94	0	1054	36	14	16	31	1.89
23680--24318	324	1.9	327	88	5	973	36	15	16	31	1.90
24787--24838	15	3.5	15	94	0	86	19	48	0	32	1.49
27643--28306	201	3.3	201	80	8	769	39	15	14	30	1.87
28196--28241	21	2.1	21	84	4	56	30	15	10	43	1.81
28272--28327	21	2.7	21	100	0	112	42	8	21	26	1.82
30186--30221	16	2.2	16	90	5	54	30	25	5	38	1.78
32217--32316	36	2.8	36	93	0	173	28	53	15	4	1.60
32225--32317	18	5.2	18	65	14	66	30	51	15	3	1.58
33367--33425	3	19.7	3	100	0	118	33	0	0	66	0.92
34337--34374	3	12.7	3	100	0	76	31	0	0	68	0.90
35799--35850	21	2.5	21	96	0	95	57	0	7	34	1.27
42639--42670	3	10.7	3	100	0	64	31	0	0	68	0.90
42875--42915	18	2.2	19	86	4	57	70	12	0	17	1.16
45821--45926	39	2.7	39	76	13	110	36	16	3	43	1.66
46072--46102	15	2.1	15	93	0	53	35	0	6	58	1.24
46193--46248	22	2.5	22	80	5	60	44	1	0	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46202--46310	27	4.0	28	76	15	97	38	2	0	57	1.19
46908--46943	19	1.9	18	88	5	54	47	8	2	41	1.48
52487--52528	13	3.2	13	86	0	57	26	23	16	33	1.96
52500--52665	85	2.0	84	87	3	244	31	21	17	29	1.96
52945--52981	18	2.1	18	100	0	74	18	16	21	43	1.88
71957--71991	12	2.9	12	100	0	70	17	8	5	68	1.35
72490--72526	18	2.1	18	94	0	65	29	21	13	35	1.92

Tables:   1

The End!