genome.fa.s7458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007458.1 Hibiscus syriacus cultivar Beakdansim tig00020439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143067

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244--280	15	2.5	15	90	0	56	16	21	24	37	1.93
252--281	15	2.0	15	100	0	60	13	26	26	33	1.93
1230--1290	31	2.0	31	93	0	104	22	8	11	57	1.60
2104--2153	20	2.4	21	83	9	59	52	0	0	48	1.00
2570--2612	22	1.9	22	85	4	59	51	0	2	46	1.13
9876--9923	21	2.3	21	96	0	87	27	18	12	41	1.86
16928--16984	28	2.0	28	86	6	80	26	10	7	56	1.59
19359--19404	2	23.0	2	100	0	92	50	0	0	50	1.00
20716--20769	2	27.0	2	100	0	108	50	0	0	50	1.00
21024--21064	21	2.0	21	90	0	64	65	4	12	17	1.42
21398--21463	29	2.3	29	84	5	80	56	7	7	28	1.55
26167--26224	21	2.8	21	81	0	62	20	18	31	29	1.97
26786--26819	2	17.0	2	100	0	68	50	0	0	50	1.00
27514--27596	30	2.8	30	81	7	96	43	8	18	30	1.79
29085--29110	13	2.0	13	100	0	52	15	23	23	38	1.92
30908--30942	6	5.8	6	100	0	70	34	0	0	65	0.93
31634--31681	21	2.2	22	81	7	62	62	0	2	35	1.07
33473--33507	15	2.4	14	85	4	52	51	0	0	48	1.00
33468--33514	11	4.1	11	80	17	51	51	0	0	48	1.00
36607--36658	20	2.6	20	87	0	68	44	26	17	11	1.83
36716--36796	20	4.1	20	93	0	135	41	18	13	25	1.87
36716--36893	40	4.5	40	70	21	160	40	18	12	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36677--36893	117	1.8	118	93	1	373	39	18	13	28	1.89
36831--36893	20	3.2	20	95	0	108	41	17	14	26	1.88
36734--36970	97	2.4	97	95	0	420	39	19	13	27	1.89
36853--37047	77	2.5	77	94	0	345	36	18	15	29	1.91
36930--36970	20	2.0	20	95	0	73	41	19	14	24	1.89
37007--37087	20	4.1	20	96	0	144	39	12	16	32	1.85
37080--37126	20	2.3	20	92	0	76	31	25	12	29	1.93
38080--38206	60	2.2	59	80	9	136	44	11	10	33	1.74
38652--38683	16	2.0	16	100	0	64	56	0	18	25	1.42
39700--39739	16	2.7	15	84	7	55	47	5	7	40	1.54
40120--40162	21	2.2	20	83	8	52	34	2	4	58	1.32
42435--42503	31	2.3	31	82	12	81	17	2	23	56	1.54
42458--42503	11	4.5	10	89	10	67	17	2	19	60	1.46
42445--42500	10	5.4	11	85	8	73	17	1	21	58	1.47
42445--42503	21	2.9	21	85	7	77	16	1	22	59	1.46
44457--44500	9	4.5	10	94	5	65	18	2	20	59	1.49
44447--44500	9	5.6	9	89	6	63	16	1	22	59	1.47
44447--44500	21	2.7	20	83	13	67	16	1	22	59	1.47
47337--47473	60	2.3	60	79	2	141	39	7	20	32	1.80
50482--50521	21	1.9	21	85	10	55	60	2	12	25	1.45
50735--50779	22	2.0	22	86	0	63	8	26	31	33	1.87
50911--50955	19	2.4	19	96	0	81	42	15	8	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51652--51702	21	2.4	22	86	6	77	35	21	29	13	1.92
62898--63148	87	2.8	89	87	6	330	48	9	21	21	1.77
65638--65702	23	2.8	23	95	0	121	33	10	21	33	1.88
65748--65797	23	2.2	23	88	0	73	38	6	22	34	1.78
65670--65872	86	2.3	87	92	0	327	41	10	15	33	1.81
66292--66859	200	3.1	178	84	9	699	29	13	13	43	1.82
66470--69745	200	16.6	198	85	6	4143	28	14	13	43	1.83
66470--69745	400	8.3	400	88	4	4862	28	14	13	43	1.83
66470--69745	600	5.5	599	88	4	4923	28	14	13	43	1.83
66242--69745	979	3.6	981	89	4	5104	28	14	13	43	1.83
69150--69187	20	1.9	19	89	5	58	39	15	2	42	1.61
74997--75034	14	2.7	14	91	0	58	60	18	15	5	1.53
75191--75234	14	3.1	14	93	0	79	63	9	6	20	1.46
79501--79550	13	3.8	13	75	15	57	50	12	4	34	1.58
79536--79634	33	3.0	33	94	1	164	45	15	7	32	1.73
79629--79668	21	1.9	21	94	0	71	47	7	15	30	1.72
81940--81984	12	3.5	12	80	16	54	15	20	17	46	1.84
81940--81977	15	2.8	13	88	11	51	15	18	15	50	1.79
81980--82018	13	3.0	13	85	7	53	51	15	15	17	1.77
81985--82044	13	3.9	14	71	24	50	48	16	15	20	1.81
90525--90608	44	2.0	39	84	11	105	28	14	22	34	1.93
91125--91191	29	2.4	28	95	5	118	43	35	8	11	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93927--93969	14	3.1	14	89	0	68	16	16	25	41	1.88
102502--102538	15	2.5	15	100	0	74	35	27	10	27	1.90
103212--103237	7	3.7	7	100	0	52	23	0	0	76	0.78
108023--108066	20	2.2	20	88	4	63	61	0	20	18	1.35
118471--118549	38	2.1	38	90	0	122	39	7	11	41	1.70
122561--122649	33	2.7	33	91	0	133	24	32	13	29	1.93
130018--130062	22	2.1	22	83	4	56	48	13	17	20	1.80
130725--130758	2	17.0	2	100	0	68	50	0	0	50	1.00
132546--132591	23	2.0	23	82	0	56	63	6	8	21	1.46
133573--133608	18	1.9	19	88	5	56	58	16	5	19	1.58
134755--134791	16	2.3	17	81	9	51	54	8	5	32	1.53
135452--135493	2	21.5	2	83	13	52	52	2	2	42	1.27
139858--139996	36	3.9	36	93	0	233	25	17	15	41	1.89

Tables:   1

The End!