Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007459.1 Hibiscus syriacus cultivar Beakdansim tig00020453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81064
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:1226 original size:18 final size:18
Alignment explanation
Indices: 1205--1240 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1195 TGTAGCATTT
*
1205 CAATGCTATGGAGCATCC
1 CAATGCTATAGAGCATCC
*
1223 CAATGCTGTAGAGCATCC
1 CAATGCTATAGAGCATCC
1241 GATGACTCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (18 bp):
CAATGCTATAGAGCATCC
Found at i:16147 original size:2 final size:2
Alignment explanation
Indices: 16140--16171 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16130 TACTCATATG
16140 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
16172 TTATTGGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:16925 original size:26 final size:27
Alignment explanation
Indices: 16896--16950 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
16886 GTCAGTTGTC
*
16896 ACATTAAG-TATCCTTGCTCATTCATA
1 ACATTAAGTTATCCTTACTCATTCATA
* * *
16922 ACATTTAGTTGTCTTTACTCATTCATA
1 ACATTAAGTTATCCTTACTCATTCATA
16949 AC
1 AC
16951 GTTTCATTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
ACATTAAGTTATCCTTACTCATTCATA
Found at i:19004 original size:22 final size:22
Alignment explanation
Indices: 18964--19014 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
18954 AGATTCAATC
* **
18964 TAAAATTTTGAATCTTAAAGTT
1 TAAAATTTTAAATCTTAAACCT
18986 TAAAATTTTAAAT-TATAAACCT
1 TAAAATTTTAAATCT-TAAACCT
19008 TAAAATT
1 TAAAATT
19015 GACAATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (22 bp):
TAAAATTTTAAATCTTAAACCT
Found at i:20474 original size:182 final size:179
Alignment explanation
Indices: 20199--20581 Score: 599
Period size: 182 Copynumber: 2.1 Consensus size: 179
20189 ATTTTCTAAT
* * * * *
20199 TTATATAAAAATTAAATTTTTTTTAATTAAAAAAGTTTATAATTAATTTAAATAATATATAATTA
1 TTATATATATATTTAATATTTTTTAATTAAAAAAGTTTACAATTAATTTAAATAATATATAATTA
* **
20264 TAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGG
66 TAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAA
20329 ATCTTAAATTATTAATTGGGTTTTAAATGGTTTGAGCTT-AGCCCATATG
131 ATCTTAAATTATTAATTGGGTTTTAAATGGTTTG-GCTTGAGCCCATATG
20378 TTATATATATATTTAATATTTTTTAATTAAAAAAACAGTTTACAATTAATTTAAATAATATATAA
1 TTATATATATATTTAATATTTTTTAATT--AAAAA-AGTTTACAATTAATTTAAATAATATATAA
* *
20443 TTATAAAATAAAAAATTT-ATATAATTTTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTA
63 TTATAAAAT-AAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTA
*
20507 TTAAATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGTTGAGCCCATATG
127 TTAAATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGCTTGAGCCCATATG
20560 TTATATAATATATTTAATATTT
1 TTATAT-ATATATTTAATATTT
20582 AAAATTTAAT
Statistics
Matches: 187, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
179 24 0.13
181 8 0.04
182 132 0.71
183 23 0.12
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (179 bp):
TTATATATATATTTAATATTTTTTAATTAAAAAAGTTTACAATTAATTTAAATAATATATAATTA
TAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAA
ATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGCTTGAGCCCATATG
Found at i:20888 original size:2 final size:2
Alignment explanation
Indices: 20881--20919 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
20871 TCTTCTAGAA
20881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20920 GACTTTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26420 original size:15 final size:15
Alignment explanation
Indices: 26400--26447 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
26390 TATAAGGTAA
26400 ATTATTTTTTATTAT
1 ATTATTTTTTATTAT
26415 ATTATTTTTTATT-T
1 ATTATTTTTTATTAT
*
26429 ATT-TTTTAT-TTA-
1 ATTATTTTTTATTAT
26441 ATTATTT
1 ATTATTT
26448 GAATAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 5 0.17
13 8 0.27
14 4 0.13
15 13 0.43
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
ATTATTTTTTATTAT
Found at i:26432 original size:11 final size:11
Alignment explanation
Indices: 26401--26440 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
26391 ATAAGGTAAA
*
26401 TTATTT-TTTA
1 TTATTTATTTT
26411 TTATATTATTTT
1 TTAT-TTATTTT
26423 TTATTTATTTT
1 TTATTTATTTT
26434 TTATTTA
1 TTATTTA
26441 ATTATTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 4 0.15
11 16 0.59
12 7 0.26
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTATTTATTTT
Found at i:27444 original size:59 final size:60
Alignment explanation
Indices: 27340--27453 Score: 131
Period size: 59 Copynumber: 1.9 Consensus size: 60
27330 GACATAATGT
* * * * * * * *
27340 CTTCAAGTTCCAGGGGGAGGCATTCAACTGCGAGCTTCTTTGACCTCAATTTCGATATGC
1 CTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTCTTCGACCTAAATGTCGATATGC
* *
27400 CTTCAAGTT-AAGGGGAAGACATTCAACTACCAGTTTGTTCGACCTAAATGTCGA
1 CTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTCTTCGACCTAAATGTCGA
27454 CATCGTGGAG
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
59 35 0.80
60 9 0.20
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (60 bp):
CTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTCTTCGACCTAAATGTCGATATGC
Found at i:29100 original size:20 final size:20
Alignment explanation
Indices: 29075--29118 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
29065 AAGTCGAGAA
29075 ATGTAGGGAAATAGAAATAG
1 ATGTAGGGAAATAGAAATAG
29095 ATGTAGGGAAATAGAAATAG
1 ATGTAGGGAAATAGAAATAG
29115 ATGT
1 ATGT
29119 TTATAAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (20 bp):
ATGTAGGGAAATAGAAATAG
Found at i:30118 original size:103 final size:103
Alignment explanation
Indices: 29934--30246 Score: 556
Period size: 103 Copynumber: 3.0 Consensus size: 103
29924 GGGTCTACGC
*
29934 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
29999 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
30037 GGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
30102 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
*
30140 GGT-TCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAATCTGGTGAGACACATACTTGA
1 GGTCT-TTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGA
* * * *
30204 TCCCTAGTATATGTATATTATTCTTAAGGAATGATATGT
65 TCCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
30243 GGTC
1 GGTC
30247 CTCATGGACA
Statistics
Matches: 202, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
102 1 0.00
103 201 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
GGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:30299 original size:23 final size:23
Alignment explanation
Indices: 30268--30333 Score: 96
Period size: 23 Copynumber: 2.9 Consensus size: 23
30258 TATTATATGA
30268 CACTACGGTGCAATTCTACGCGG
1 CACTACGGTGCAATTCTACGCGG
* *
30291 CACTCCGGTGCAATTCTACGTGG
1 CACTACGGTGCAATTCTACGCGG
* *
30314 CACTTCGGTGCAATTATACG
1 CACTACGGTGCAATTCTACG
30334 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (23 bp):
CACTACGGTGCAATTCTACGCGG
Found at i:34256 original size:20 final size:20
Alignment explanation
Indices: 34231--34274 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
34221 AAGTCGAGAA
34231 ATGTAGGGAAATAGAAATAG
1 ATGTAGGGAAATAGAAATAG
34251 ATGTAGGGAAATAGAAATAG
1 ATGTAGGGAAATAGAAATAG
34271 ATGT
1 ATGT
34275 TTATAAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (20 bp):
ATGTAGGGAAATAGAAATAG
Found at i:35268 original size:103 final size:103
Alignment explanation
Indices: 35089--35412 Score: 569
Period size: 103 Copynumber: 3.1 Consensus size: 103
35079 GGGTCTACGC
*
35089 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
35154 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
*
35192 GGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATACTTGAT
1 GGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
35257 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
* *
35295 GGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* * *
35360 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
35398 GGTCCTT-ATGGACAT
1 GGTCCTTCA-GGACAT
35413 TATTATATGG
Statistics
Matches: 211, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
103 211 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (103 bp):
GGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:35454 original size:23 final size:23
Alignment explanation
Indices: 35421--35488 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
35411 ATTATTATAT
*
35421 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
*
35444 GGCA-TTCCGGTGCAATTCTACGT
1 GGCACTT-CGGTGCAATTCTACGC
*
35467 GGCACTTCGGTGCAATTATACG
1 GGCACTTCGGTGCAATTCTACG
35489 AGCTGTGGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
22 1 0.03
23 37 0.93
24 2 0.05
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:38457 original size:19 final size:19
Alignment explanation
Indices: 38419--38458 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
38409 ACAAACAATA
* *
38419 TAAATAAAAAGTTCATAAT
1 TAAATAAAAACTTCAAAAT
*
38438 TAAATAAAAACTTTAAAAT
1 TAAATAAAAACTTCAAAAT
38457 TA
1 TA
38459 CTTTTCAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAATAAAAACTTCAAAAT
Found at i:46246 original size:19 final size:20
Alignment explanation
Indices: 46217--46254 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
46207 AGAAATTTGT
46217 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
46237 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
46255 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:46297 original size:63 final size:62
Alignment explanation
Indices: 46222--46380 Score: 194
Period size: 63 Copynumber: 2.5 Consensus size: 62
46212 TTTGTTGAAG
* * * *
46222 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
** **
46285 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
*
46348 GTGCATTGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
46381 GCCTCCATTA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
63 79 0.94
64 5 0.06
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:47721 original size:18 final size:18
Alignment explanation
Indices: 47698--47733 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47688 AGGAATGATA
47698 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
47716 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
47734 ATATGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:47735 original size:62 final size:61
Alignment explanation
Indices: 47669--47977 Score: 152
Period size: 62 Copynumber: 5.1 Consensus size: 61
47659 TGATCCCTAG
47669 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGT-CTTCGGGACATTGTGGTCCTTCGGGA
* * ** * *
47731 CATA--TATGT-ATTCTT-TGGAACATG-TATGCAGTCTGGT-GAGACACATACT-TGATCC--C
1 CATATGTATATGATTCTTAAGG-A-ATGATATGTGGTCT--TCG-G-GACAT--TGTGGTCCTTC
**
47787 TAG-
58 GGGA
*
47790 CATATGTATATGATTCTTAAGGAATGATATGTGGTACTTCGGGACATTGTGGTCCTTCAGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGT-CTTCGGGACATTGTGGTCCTTCGGGA
* * ** * * * *
47852 CATA--TATGT-ATTCTT-TGGAACATG-TATGAAGTCTAGT-GAGACACATATTTGATCC--CT
1 CATATGTATATGATTCTTAAGG-A-ATGATATGTGGTCT--TCG-G-GACAT-TGTGGTCCTTCG
*
47909 AG-
59 GGA
*
47911 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGAA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGT-CTTCGGGACATTGTGGTCCTTCGGGA
47973 CATAT
1 CATAT
47978 ATGTATTCTT
Statistics
Matches: 176, Mismatches: 35, Indels: 72
0.62 0.12 0.25
Matches are distributed among these distances:
58 9 0.05
59 47 0.27
60 30 0.17
61 29 0.16
62 52 0.30
63 9 0.05
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.35
Consensus pattern (61 bp):
CATATGTATATGATTCTTAAGGAATGATATGTGGTCTTCGGGACATTGTGGTCCTTCGGGA
Found at i:47753 original size:121 final size:121
Alignment explanation
Indices: 47595--48079 Score: 871
Period size: 121 Copynumber: 4.0 Consensus size: 121
47585 CAAGGGTCTA
*
47595 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
47660 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
*
47716 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGCAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
*
47781 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTACTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
* * *
47837 TGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACACATATTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
47902 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
* *
47958 TGTGGTCCTTCGGAACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
* **
48023 GATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
48079 T
1 T
48080 ATTATATGGC
Statistics
Matches: 348, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 348 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (121 bp):
TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
Found at i:47842 original size:18 final size:18
Alignment explanation
Indices: 47819--47854 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47809 AGGAATGATA
*
47819 TGTGGTACTTCGGGACAT
1 TGTGGTACTTCAGGACAT
*
47837 TGTGGTCCTTCAGGACAT
1 TGTGGTACTTCAGGACAT
47855 ATATGTATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (18 bp):
TGTGGTACTTCAGGACAT
Found at i:47915 original size:59 final size:58
Alignment explanation
Indices: 47610--47915 Score: 132
Period size: 59 Copynumber: 5.1 Consensus size: 58
47600 TCCTTCGGGA
* *
47610 CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 CATATATGTATTCTTTGGAACATGTATGAAGTCT-GTGAGACACATATTTGATCCCTAG
* * ** * * * *
47669 CATATGTATATGATTCTTAAGG-A-ATGATATGTGGTCCT-TCG-G-GACAT-TGTGGTCCTTCG
1 CATA--TATGT-ATTCTT-TGGAACATG-TATGAAGT-CTGT-GAGACACATATTTGATCC--CT
*
47728 GG
57 AG
* *
47730 ACATATATGTATTCTTTGGAACATGTATGCAGTCTGGTGAGACACATACTTGATCCCTAG
1 -CATATATGTATTCTTTGGAACATGTATGAAGTCT-GTGAGACACATATTTGATCCCTAG
* * ** * * * *
47790 CATATGTATATGATTCTTAAGG-A-ATGATATGTGGTACT-TCG-G-GACAT-TGTGGTCCTTCA
1 CATA--TATGT-ATTCTT-TGGAACATG-TATGAAGT-CTGT-GAGACACATATTTGATCCCT-A
47849 GG
58 -G
47851 ACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACACATATTTGATCCCTAG
1 -CATATATGTATTCTTTGGAACATGTATGAAGTCT-GTGAGACACATATTTGATCCCTAG
47911 CATAT
1 CATAT
47916 GTATATGATT
Statistics
Matches: 175, Mismatches: 38, Indels: 68
0.62 0.14 0.24
Matches are distributed among these distances:
58 8 0.05
59 52 0.30
60 30 0.17
61 30 0.17
62 47 0.27
63 8 0.05
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (58 bp):
CATATATGTATTCTTTGGAACATGTATGAAGTCTGTGAGACACATATTTGATCCCTAG
Found at i:47963 original size:18 final size:18
Alignment explanation
Indices: 47940--47975 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
47930 AGGAATGATA
*
47940 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGAACAT
47958 TGTGGTCCTTCGGAACAT
1 TGTGGTCCTTCGGAACAT
47976 ATATGTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.22, G:0.31, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGAACAT
Found at i:48154 original size:23 final size:23
Alignment explanation
Indices: 48086--48146 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
48076 CATTATTATA
*
48086 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
* *
48109 CGGCACTACGGTGTAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
48132 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
48147 TTTATATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:51990 original size:19 final size:20
Alignment explanation
Indices: 51961--51998 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
51951 AGAAATTTGT
51961 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
51981 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
51999 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:52042 original size:63 final size:63
Alignment explanation
Indices: 51967--52124 Score: 185
Period size: 63 Copynumber: 2.5 Consensus size: 63
51957 TTGTTGAAGG
* * * *
51967 TGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCAA
1 TGCATCGATGCATAAGAAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCAA
** ** *
52030 TGCATCGATGCATAAGGAA-TGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCAG
1 TGCATCGATGCATAA-GAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCAA
* *
52093 TGCATCGATGCATCAGGAGTGCATCGATGCAT
1 TGCATCGATGCATAAGAAGTGCATCGATGCAT
52125 GCCTCCATTA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.02
63 72 0.89
64 7 0.09
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCAA
Found at i:53203 original size:18 final size:18
Alignment explanation
Indices: 53180--53215 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
53170 AGGAATGATA
*
53180 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGAGACAT
53198 TGTGGTCCTTCGAGACAT
1 TGTGGTCCTTCGAGACAT
53216 ATATGTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.22, G:0.31, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGAGACAT
Found at i:53337 original size:61 final size:61
Alignment explanation
Indices: 53151--53341 Score: 159
Period size: 61 Copynumber: 3.1 Consensus size: 61
53141 TGATCCCTAG
*
53151 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGAGA
1 CATATGTATAT-ATTCTTAAGGAATGATATGTAGTCCTTCGGGACATTGTGGTCCTTCGAGA
* * * * *
53213 CATA--TATGTATTCTT-TGGAACATG-TATGAAGT-CTGGT-GAGACACATACT-TGATCC--C
1 CATATGTATATATTCTTAAGG-A-ATGATATGTAGTCCT--TCG-G-GACAT--TGTGGTCCTTC
*
53269 TAG-
58 GAGA
*
53272 CATATGTATATATTCTTAAGGAATGATATGTAGTCCTTCGGGACATTGTGGTCCTTCGGGA
1 CATATGTATATATTCTTAAGGAATGATATGTAGTCCTTCGGGACATTGTGGTCCTTCGAGA
53333 CATATGTAT
1 CATATGTAT
53342 TCTTTGGAAC
Statistics
Matches: 97, Mismatches: 14, Indels: 37
0.66 0.09 0.25
Matches are distributed among these distances:
57 1 0.01
58 9 0.09
59 22 0.23
60 19 0.20
61 32 0.33
62 13 0.13
63 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (61 bp):
CATATGTATATATTCTTAAGGAATGATATGTAGTCCTTCGGGACATTGTGGTCCTTCGAGA
Found at i:53381 original size:239 final size:237
Alignment explanation
Indices: 53077--53554 Score: 807
Period size: 239 Copynumber: 2.0 Consensus size: 237
53067 CGAGGGTCTA
* *
53077 TGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTAGTGAGACACATACTT
1 TGTGGTCCTTCGGGACA-ATATGTATTCTTTGGAACATGTATAAAGTCTAGTGAGACACATACTT
53142 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCT
65 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGT-GTCCT
53207 TCGAGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAG
129 TCGAGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAG--ACATACTTGATCCCTAG
*
53272 CATATGTATAT-ATTCTTAAGGAATGATATGTAGTCCTTCGGGACAT
192 CATATGTATATGATT-TTAAGGAATGATATGTAGTCCTTAGGGACAT
* *
53318 TGTGGTCCTTCGGGAC-ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTG
1 TGTGGTCCTTCGGGACAATATGTATTCTTTGGAACATGTATAAAGTCTAGTGAGACACATACTTG
53382 ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGTCCTTC
66 ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGTCCTTC
* * *
53447 GGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACATACTTGATCCCTAGTATA
131 GAGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACATACTTGATCCCTAGCATA
* *
53512 TGTATATGATTTTAAGGAATGATATGTGGTCCTTATGGACAT
196 TGTATATGATTTTAAGGAATGATATGTAGTCCTTAGGGACAT
53554 T
1 T
53555 ATTATATGGC
Statistics
Matches: 226, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
236 56 0.25
237 3 0.01
238 49 0.22
239 103 0.46
241 15 0.07
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (237 bp):
TGTGGTCCTTCGGGACAATATGTATTCTTTGGAACATGTATAAAGTCTAGTGAGACACATACTTG
ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGTCCTTC
GAGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACATACTTGATCCCTAGCATA
TGTATATGATTTTAAGGAATGATATGTAGTCCTTAGGGACAT
Found at i:53386 original size:118 final size:120
Alignment explanation
Indices: 53077--53554 Score: 797
Period size: 118 Copynumber: 4.0 Consensus size: 120
53067 CGAGGGTCTA
* * * *
53077 TGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTAGTGAGACACATACTT
1 TGTGGTCCTTCGGGACA-ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
53142 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
65 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
*
53198 TGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACA-ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
*
53263 GATCCCTAGCATATGTATAT-ATTCTTAAGGAATGATATGTAGTCCTTCGGGACAT
65 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
53318 TGTGGTCCTTCGGGAC-ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTG
1 TGTGGTCCTTCGGGACAATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTG
53382 ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
*
53437 TGT-GTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAG--ACATACTT
1 TGTGGTCCTTCGGGACA-ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
* **
53499 GATCCCTAGTATATGTATATGATT-TTAAGGAATGATATGTGGTCCTTATGGACAT
65 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
53554 T
1 T
53555 ATTATATGGC
Statistics
Matches: 342, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
117 30 0.09
118 110 0.32
119 37 0.11
120 85 0.25
121 80 0.23
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (120 bp):
TGTGGTCCTTCGGGACAATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTG
ATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
Found at i:53394 original size:57 final size:57
Alignment explanation
Indices: 53216--53398 Score: 148
Period size: 57 Copynumber: 3.1 Consensus size: 57
53206 TTCGAGACAT
53216 ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAGC
1 ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAGC
* * * * *
53273 ATATGTATATATTCTTAAGG-A-ATGATATGTAGTCCT--TCG-G-GACAT--TGTGGTCCTTCG
1 ATATG----TATTCTT-TGGAACATG-TATGAAGT-CTGGT-GAGACACATACT-TGATCC--CT
*
53330 GGAC
55 AG-C
53334 ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAGC
1 ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAGC
53391 ATATGTAT
1 ATATGTAT
53399 ATGATTCTTA
Statistics
Matches: 94, Mismatches: 12, Indels: 40
0.64 0.08 0.27
Matches are distributed among these distances:
56 4 0.04
57 31 0.33
58 12 0.13
59 8 0.09
60 12 0.13
61 23 0.24
62 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (57 bp):
ATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAGC
Found at i:53629 original size:23 final size:23
Alignment explanation
Indices: 53561--53621 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
53551 CATTATTATA
*
53561 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
* *
53584 CGGCACTACAGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
53607 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
53622 TTTATATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:67116 original size:36 final size:36
Alignment explanation
Indices: 67076--67182 Score: 205
Period size: 36 Copynumber: 3.0 Consensus size: 36
67066 CACCGCGTTT
*
67076 ACTCTCAGACAGACGATCAGTCAGAGTGCGTTATTC
1 ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATTC
67112 ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATTC
1 ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATTC
67148 ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATT
1 ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATT
67183 GATTTTGAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
36 70 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (36 bp):
ACTCTCAGACAGATGATCAGTCAGAGTGCGTTATTC
Found at i:71320 original size:21 final size:22
Alignment explanation
Indices: 71296--71343 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
71286 AAATTAAGAC
*
71296 AAATTTCTTATTTT-GATT-ATA
1 AAATTTATTATTTTAG-TTAATA
71317 AAA-TTATTATTTTAGTTAATA
1 AAATTTATTATTTTAGTTAATA
71338 AAATTT
1 AAATTT
71344 GGAAACAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 11 0.48
21 10 0.43
22 2 0.09
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
AAATTTATTATTTTAGTTAATA
Found at i:76948 original size:16 final size:16
Alignment explanation
Indices: 76925--76961 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
76915 AATGAAAAAC
*
76925 ATTTTTTAAATATATAA
1 ATTTTTAAAAT-TATAA
76942 ATTTTTAAAATTATAA
1 ATTTTTAAAATTATAA
76958 ATTT
1 ATTT
76962 ATTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTTAAAATTATAA
Found at i:77192 original size:21 final size:21
Alignment explanation
Indices: 77151--77189 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
77141 ATGCATAAAG
77151 TTATAAATTTTAAAAATAATT
1 TTATAAATTTTAAAAATAATT
77172 TTAT-AATTTTAAAAATAA
1 TTATAAATTTTAAAAATAA
77190 ATTGTGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATAAATTTTAAAAATAATT
Found at i:77803 original size:22 final size:22
Alignment explanation
Indices: 77744--77804 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 22
77734 AAAGGAAGCA
77744 TGTATATACAAATCATTGTTTT
1 TGTATATACAAATCATTGTTTT
* *
77766 TGCTTATTAAAAAAATCATT-TTCTT
1 TG--TA-TATACAAATCATTGTT-TT
77791 TGTATATACAAATC
1 TGTATATACAAATC
77805 TTTAAATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
22 10 0.32
23 2 0.06
24 4 0.13
25 15 0.48
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46
Consensus pattern (22 bp):
TGTATATACAAATCATTGTTTT
Found at i:80373 original size:128 final size:130
Alignment explanation
Indices: 80088--80385 Score: 424
Period size: 128 Copynumber: 2.3 Consensus size: 130
80078 TTTAAGAGTG
* *
80088 AAACGATAATATCTAATTATTTTCAATCAAGAATAAATGACCTTTCGTGCATTGAAACAGTAATT
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAACAGTAATT
* * *
80153 TAGTACCCCAATTGAAATAAAGAGATATTACTATTTTGTCTTAAAATCAATAGCGATTCGAGTGA
66 TAGTACCCCAATTGAAATAAAAAGATATTACTATTTTGTCTTAAAATCAATAGCAATTCGAGAGA
* * * *
80218 AAATGATAA-ATCTAATGATTTCCAATCGAGAATAAATGACCTTTCGTGCATTAAAACAGTCA-T
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAACAGTAATT
* ** *
80281 TATTACCCCAATTGAAATAAAAAGATA-TACTATTTTGTCTTAAAAATCGGTA-TAATTCGAGAG
66 TAGTACCCCAATTGAAATAAAAAGATATTACTATTTTGTCTT-AAAATCAATAGCAATTCGAGAG
80344 A
130 A
* *
80345 AAACGACAATATCAAATTATTTTCAATCGAGAATAAATGAC
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGAC
80386 ATCTCAGCCT
Statistics
Matches: 148, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
127 30 0.20
128 62 0.42
129 48 0.32
130 8 0.05
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (130 bp):
AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAACAGTAATT
TAGTACCCCAATTGAAATAAAAAGATATTACTATTTTGTCTTAAAATCAATAGCAATTCGAGAGA
Found at i:80414 original size:128 final size:128
Alignment explanation
Indices: 80088--80442 Score: 396
Period size: 128 Copynumber: 2.8 Consensus size: 128
80078 TTTAAGAGTG
*
80088 AAACGATAATATCTAATTATTTTCAATCAAGAATAAATGACCTTTCGTGCATTGAAACAGTAAT-
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATT--AA-AGTAATC
* * * *
80152 -TTAGTACCCCAATTGAAATAAAGAGATATTACTATTTTGTCTTAAAATCAATAGCGATTCGAGT
63 ATTATTACCCCAATTGAAATAAAAAGATA-TACTATTTTGTCTTAAAATCAATAGCAATTCGAGA
80216 GA
127 GA
* * * ** *
80218 AAATGATAA-ATCTAATGATTTCCAATCGAGAATAAATGACCTTTCGTGCATTAAAACAGTCATT
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAGTAATCATT
** *
80282 ATTACCCCAATTGAAATAAAAAGATATACTATTTTGTCTTAAAAATCGGTA-TAATTCGAGAGA
66 ATTACCCCAATTGAAATAAAAAGATATACTATTTTGTCTT-AAAATCAATAGCAATTCGAGAGA
* * * * * *
80345 AAACGACAATATCAAATTATTTTCAATCGAGAATAAATGACATCTC-AGCCTTAAAGTAATCATT
1 AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAGTAATCATT
* * ** *
80409 GATTACTCCGACCGAAATAAAAATATATACTATT
66 -ATTACCCCAATTGAAATAAAAAGATATACTATT
80443 CTCAATATCG
Statistics
Matches: 189, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
126 3 0.02
127 45 0.24
128 93 0.49
129 40 0.21
130 8 0.04
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.32
Consensus pattern (128 bp):
AAACGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTTTCGTGCATTAAAGTAATCATT
ATTACCCCAATTGAAATAAAAAGATATACTATTTTGTCTTAAAATCAATAGCAATTCGAGAGA
Done.