genome.fa.s7460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007460.1 Hibiscus syriacus cultivar Beakdansim tig00020458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111216

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3186--3278	46	2.0	46	95	0	168	32	0	38	29	1.57
3245--3310	32	2.1	32	97	0	123	31	0	39	28	1.57
3199--3347	80	1.9	78	92	2	253	34	0	36	28	1.58
3467--3499	17	1.9	17	88	11	50	30	3	54	12	1.52
8804--8927	46	2.6	46	84	6	140	46	21	11	20	1.81
21095--21166	35	2.1	35	94	0	126	29	22	9	38	1.86
21624--22065	109	4.1	109	93	0	758	21	19	27	32	1.97
29337--29375	15	2.6	15	87	0	51	82	5	7	5	0.96
30756--30805	23	2.2	22	83	16	59	70	0	8	22	1.13
31268--31339	35	2.1	35	91	0	117	27	23	11	37	1.89
32817--32865	13	3.8	13	91	0	80	18	46	18	16	1.84
32830--32891	31	2.0	31	90	6	99	17	45	20	16	1.86
32843--32880	18	2.1	18	95	0	67	21	47	21	10	1.80
32865--32919	8	7.5	8	76	19	66	14	36	25	23	1.93
32882--32920	7	5.3	7	90	9	60	12	33	28	25	1.93
32882--32919	15	2.5	15	100	0	76	13	34	26	26	1.93
34209--34244	18	2.0	18	88	0	54	52	0	16	30	1.44
35398--35471	23	3.2	23	83	9	96	24	17	21	36	1.95
35404--35478	24	3.2	24	88	1	116	25	17	21	36	1.95
37670--37718	13	3.8	13	91	0	80	18	46	18	16	1.84
37696--37731	18	2.0	18	94	0	63	19	47	22	11	1.80
37721--37759	7	5.4	7	96	3	69	12	33	28	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39052--39087	18	2.0	18	88	0	54	52	0	16	30	1.44
40238--40311	23	3.2	23	83	9	96	24	17	21	36	1.95
40244--40318	24	3.2	24	88	1	116	25	17	21	36	1.95
48818--49266	229	2.0	226	93	2	774	45	8	6	39	1.60
49331--49375	19	2.3	19	88	3	72	53	11	17	17	1.72
49497--49543	20	2.4	19	89	10	76	55	10	17	17	1.69
49501--49548	20	2.6	18	84	15	62	56	10	14	18	1.66
51770--51834	21	3.1	21	80	6	69	40	15	29	15	1.88
51866--51926	32	1.9	32	89	0	95	29	0	47	22	1.52
53713--53761	19	2.6	19	93	0	80	30	2	10	57	1.43
53880--55257	198	7.0	199	97	1	2580	37	15	14	32	1.89
53880--55257	395	3.5	396	97	1	2590	37	15	14	32	1.89
53880--55257	593	2.3	593	97	1	2572	37	15	14	32	1.89
55268--55331	23	2.8	23	82	0	83	35	6	18	39	1.76
55268--55340	23	3.2	23	78	7	76	34	5	19	41	1.74
55696--55757	21	2.8	23	85	7	83	35	6	20	37	1.79
55720--55771	21	2.5	21	87	6	70	34	1	21	42	1.64
56051--56096	21	2.2	21	81	14	60	39	13	10	36	1.79
56114--56177	23	2.8	23	87	0	92	35	6	20	37	1.78
56114--56186	23	3.2	23	82	7	85	34	5	20	39	1.76
55257--56456	420	2.8	429	96	2	2271	39	8	13	39	1.73
58730--58970	129	1.9	129	84	3	324	42	12	13	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58454--59157	329	2.1	329	92	0	1149	42	12	14	30	1.83
58859--59347	200	2.5	199	82	5	594	41	13	14	30	1.84
59342--59503	87	1.9	87	93	2	281	36	14	8	40	1.76
61063--61135	36	2.0	36	89	5	112	23	15	34	27	1.94
61422--61473	24	2.2	24	96	0	95	42	7	13	36	1.73
67693--67729	14	2.6	14	100	0	74	45	5	0	48	1.25
69024--69098	29	2.5	29	78	10	71	37	8	0	54	1.30
69077--69135	31	1.9	31	86	6	84	42	6	1	49	1.39
69706--69747	21	2.0	20	86	4	57	14	14	30	40	1.85
71009--71057	3	16.0	3	82	4	62	40	0	0	59	0.98
71011--71055	12	3.9	12	91	8	76	42	0	0	57	0.98
76553--76584	15	2.1	15	94	0	55	25	18	9	46	1.79
83896--83970	11	6.5	11	85	14	91	84	0	16	0	0.63
83898--83968	18	3.9	17	85	14	90	84	0	15	0	0.62
83898--83970	25	3.0	24	82	15	96	83	0	16	0	0.64
83896--83969	36	2.1	36	90	10	116	85	0	14	0	0.61
85985--86706	113	6.3	113	90	1	989	36	12	19	31	1.89
85985--86706	225	3.2	224	89	2	1041	36	12	19	31	1.89
88921--88968	18	2.7	19	81	12	66	27	20	12	39	1.89
90774--90926	65	2.4	66	82	8	172	31	18	20	28	1.97
98518--98717	31	6.5	31	78	4	215	50	16	10	22	1.75
98547--98748	93	2.2	92	87	1	280	50	15	10	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99313--99356	17	2.5	18	85	7	63	40	11	20	27	1.86
99517--99566	17	2.7	19	78	12	59	44	4	0	52	1.20
105545--105714	60	2.8	60	76	15	145	33	22	4	39	1.75

Tables:   1

The End!