genome.fa.s7462.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007462.1 Hibiscus syriacus cultivar Beakdansim tig00020467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121552

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758--1816	29	2.0	31	83	6	77	18	6	3	71	1.23
1760--1824	29	2.2	29	77	0	67	18	6	4	70	1.26
1961--2038	29	2.7	29	78	4	86	26	8	7	56	1.57
1952--2062	29	3.8	28	70	14	82	22	10	10	55	1.65
13426--13476	7	7.4	7	77	20	54	74	0	13	11	1.07
13436--13475	13	3.1	13	89	7	55	72	0	15	12	1.12
13447--13489	20	2.2	20	87	8	61	76	0	13	9	1.01
13439--13492	13	4.2	12	81	13	54	77	0	12	9	0.98
14741--14794	17	3.1	17	70	15	56	48	11	16	24	1.79
14724--14972	105	2.4	105	83	2	302	40	16	17	26	1.90
15153--15223	3	23.7	3	100	0	142	33	0	0	66	0.92
18188--18255	29	2.3	30	80	10	77	19	7	4	69	1.30
18292--18363	30	2.4	30	81	4	83	11	8	16	63	1.49
18402--18525	30	4.2	30	72	12	85	23	8	8	60	1.51
21170--21224	22	2.5	22	88	5	76	21	14	21	41	1.89
24282--24564	140	2.0	140	100	0	566	32	17	15	34	1.92
25946--26211	139	1.9	139	99	0	523	18	13	23	44	1.85
44323--44359	18	2.1	18	89	0	56	27	24	29	18	1.98
46152--46200	24	1.9	25	88	12	73	57	20	10	12	1.64
51667--51701	3	11.7	3	93	0	61	65	2	0	31	1.07
53113--53164	3	17.7	3	77	18	56	65	0	0	34	0.93
53113--53169	20	2.8	21	81	7	73	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53113--53164	23	2.2	24	82	6	70	65	0	0	34	0.93
53524--54203	113	6.0	113	92	3	941	28	18	14	38	1.90
53628--54203	113	5.1	113	95	1	980	29	18	14	37	1.91
55755--55794	21	1.9	21	94	0	71	10	10	0	80	0.92
55744--55808	21	2.8	21	78	19	67	12	12	0	75	1.05
63089--63120	16	2.1	16	88	11	50	31	3	12	53	1.54
66437--66494	25	2.3	25	96	0	107	70	6	3	18	1.24
66485--66543	27	2.3	25	80	8	73	64	0	3	32	1.10
67033--67083	15	3.6	15	74	15	54	47	11	13	27	1.78
67038--67072	12	2.7	13	86	13	54	57	11	11	20	1.64
68283--68324	21	2.0	21	95	0	75	47	7	14	30	1.71
71568--71596	15	1.9	15	100	0	58	55	6	0	37	1.27
75297--75396	43	2.3	43	89	3	148	23	18	22	37	1.94
75433--75665	96	2.4	97	94	0	414	32	18	14	33	1.92
77768--77979	42	5.2	42	78	4	209	37	20	16	24	1.93
77768--77891	41	3.0	40	85	3	122	40	19	16	24	1.91
78528--78593	20	3.3	20	81	12	82	34	21	18	25	1.96
78756--78810	22	2.5	22	87	0	83	14	47	18	20	1.83
79140--79190	20	2.5	20	96	0	93	50	21	13	13	1.76
79194--79244	20	2.5	20	74	0	57	17	17	17	47	1.84
79442--79477	18	2.0	18	88	0	54	22	2	19	55	1.56
81741--81787	24	2.0	24	95	0	85	36	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81741--81801	24	2.5	24	83	0	59	34	21	19	24	1.96
82552--82619	22	2.8	25	69	13	70	26	7	41	25	1.81
82720--82887	20	8.4	20	73	5	70	33	13	25	27	1.93
82720--82868	40	3.7	39	73	8	122	35	12	24	27	1.92
85486--85528	22	2.0	22	100	0	86	37	20	4	37	1.74
108046--108105	18	3.3	18	71	19	54	25	33	20	21	1.97
108056--108116	18	3.4	18	88	0	95	26	32	21	19	1.97
108166--108214	16	3.1	16	100	0	98	38	24	24	12	1.90
108924--108984	24	2.5	24	97	0	113	24	22	19	32	1.97
109484--109517	10	3.3	10	84	8	50	38	17	8	35	1.81
116227--116274	25	1.9	25	83	8	62	43	2	0	54	1.12
119846--119871	12	2.2	12	100	0	52	61	0	38	0	0.96

Tables:   1

The End!