Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007463.1 Hibiscus syriacus cultivar Beakdansim tig00020468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67294
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Found at i:9160 original size:2 final size:2
Alignment explanation
Indices: 9153--9179 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9143 AAACCAAATA
9153 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9180 AATTATAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9480 original size:18 final size:18
Alignment explanation
Indices: 9453--9487 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9443 TATATAAGTG
9453 TGTGTATTTGATTCCCCA
1 TGTGTATTTGATTCCCCA
*
9471 TGTGTGTTTGATTCCCC
1 TGTGTATTTGATTCCCC
9488 GATGCCCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.46
Consensus pattern (18 bp):
TGTGTATTTGATTCCCCA
Found at i:11899 original size:17 final size:17
Alignment explanation
Indices: 11877--11910 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11867 TAAACACTTT
*
11877 TAAACAGGTTTTTAAAC
1 TAAACAGGCTTTTAAAC
11894 TAAACAGGCTTTTAAAC
1 TAAACAGGCTTTTAAAC
11911 AGGCCAGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (17 bp):
TAAACAGGCTTTTAAAC
Found at i:11918 original size:17 final size:18
Alignment explanation
Indices: 11898--11937 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
11888 TTAAACTAAA
11898 CAGGCTTTTAAACAGG-C
1 CAGGCTTTTAAACAGGCC
*
11915 CAGGTTTTTAAACAGGCC
1 CAGGCTTTTAAACAGGCC
11933 CAGGC
1 CAGGC
11938 CAAGCCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (18 bp):
CAGGCTTTTAAACAGGCC
Found at i:14757 original size:16 final size:17
Alignment explanation
Indices: 14736--14768 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
14726 ATCATCTGGT
14736 TGTTATTTTTA-TAGTA
1 TGTTATTTTTATTAGTA
14752 TGTTATTTTTATTAGTA
1 TGTTATTTTTATTAGTA
14769 ATATAATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (17 bp):
TGTTATTTTTATTAGTA
Found at i:26168 original size:2 final size:2
Alignment explanation
Indices: 26161--26208 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
26151 AAATGATGAA
26161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26203 AT AT AT
1 AT AT AT
26209 TCCCCTCACC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27548 original size:31 final size:30
Alignment explanation
Indices: 27513--27580 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
27503 AAAATTTAAG
*
27513 TACTAAAATAGATCAAAATTGATAGTTTAGA
1 TACTAAAATA-ATCAAAACTGATAGTTTAGA
* * *
27544 TACTAAACTAATTAAAGCTGATAGTTTAGA
1 TACTAAAATAATCAAAACTGATAGTTTAGA
*
27574 CACTAAA
1 TACTAAA
27581 CTCATAGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (30 bp):
TACTAAAATAATCAAAACTGATAGTTTAGA
Found at i:29863 original size:25 final size:25
Alignment explanation
Indices: 29828--29887 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
29818 AATCTCAACA
* *
29828 AATATACATAATAAATTTCATTTAT
1 AATATAAATAATAAATTTCATTGAT
*
29853 CATATAAATAATAAATTTCATTGAT
1 AATATAAATAATAAATTTCATTGAT
29878 AATATAAATA
1 AATATAAATA
29888 TTCAGAGCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (25 bp):
AATATAAATAATAAATTTCATTGAT
Found at i:32314 original size:9 final size:9
Alignment explanation
Indices: 32302--32353 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
32292 GATAATATTA
32302 TTACTAAAT
1 TTACTAAAT
**
32311 TTACTTTAT
1 TTACTAAAT
32320 ATTACTAAAT
1 -TTACTAAAT
* *
32330 TTACTTTATT
1 TTAC-TAAAT
32340 TTACTAAAT
1 TTACTAAAT
32349 TTACT
1 TTACT
32354 TTTTATATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
9 19 0.58
10 14 0.42
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.54
Consensus pattern (9 bp):
TTACTAAAT
Found at i:32324 original size:19 final size:19
Alignment explanation
Indices: 32300--32355 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
32290 AAGATAATAT
32300 TATTACTAAATTTACTTTA
1 TATTACTAAATTTACTTTA
32319 TATTACTAAATTTACTTTA
1 TATTACTAAATTTACTTTA
*
32338 TTTTACTAAATTTACTTT
1 TATTACTAAATTTACTTT
32356 TTATATATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTACTAAATTTACTTTA
Found at i:34802 original size:11 final size:12
Alignment explanation
Indices: 34768--34872 Score: 83
Period size: 12 Copynumber: 8.8 Consensus size: 12
34758 ACAGAAAATA
*
34768 AAAATAAAAAAC
1 AAAATATAAAAC
* *
34780 AGCAATAAAAAAC
1 A-AAATATAAAAC
34793 AACAATA-AAAAC
1 AA-AATATAAAAC
34805 AAAATATAAAAC
1 AAAATATAAAAC
*
34817 CAAATATAAAAC
1 AAAATATAAAAC
34829 AAAA-AT-AAA-
1 AAAATATAAAAC
* *
34838 AAAATACAAAAT
1 AAAATATAAAAC
*
34850 AGAATATAAAAC
1 AAAATATAAAAC
*
34862 ATAAACATAAA
1 A-AAATATAAA
34873 CATAAAAAAC
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
9 4 0.05
10 4 0.05
11 9 0.12
12 37 0.49
13 22 0.29
ACGTcount: A:0.74, C:0.10, G:0.02, T:0.13
Consensus pattern (12 bp):
AAAATATAAAAC
Found at i:34802 original size:25 final size:23
Alignment explanation
Indices: 34768--34840 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 23
34758 ACAGAAAATA
*
34768 AAAATAAAAAACAGCAATAAAAAAC
1 AAAAT-AAAAACA-AAATAAAAAAC
*
34793 AACAATAAAAACAAAATATAAAAC
1 AA-AATAAAAACAAAATAAAAAAC
*
34817 CAAATATAAAACAAAAATAAAAAA
1 AAAATA-AAAAC-AAAATAAAAAA
34841 ATACAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 4 0.10
24 15 0.37
25 19 0.46
26 3 0.07
ACGTcount: A:0.77, C:0.11, G:0.01, T:0.11
Consensus pattern (23 bp):
AAAATAAAAACAAAATAAAAAAC
Found at i:34872 original size:71 final size:70
Alignment explanation
Indices: 34767--34907 Score: 153
Period size: 71 Copynumber: 2.0 Consensus size: 70
34757 AACAGAAAAT
* * *
34767 AAAAATAAAAAACAGCAATAAAAAACAACAATAAA-A-ACAAAATATAAAACCAAATATAAAACA
1 AAAAATAAAAAACAGCAATAAAAAACAAAAATAAACATAAAAAACAT-AAACC-AATATAAAACA
34830 AAAATAA
64 AAAATAA
* * * * *
34837 AAAAATACAAAATAG-AATATAAAACATAAACATAAACATAAAAAACATAAATCAATATAATACA
1 AAAAATAAAAAACAGCAATAAAAAACA-AAA-ATAAACATAAAAAACATAAACCAATATAAAACA
34901 AAAATAA
64 AAAATAA
34908 GAGATTTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
69 10 0.17
70 15 0.25
71 22 0.37
72 5 0.08
73 7 0.12
ACGTcount: A:0.73, C:0.11, G:0.01, T:0.15
Consensus pattern (70 bp):
AAAAATAAAAAACAGCAATAAAAAACAAAAATAAACATAAAAAACATAAACCAATATAAAACAAA
AATAA
Found at i:34883 original size:21 final size:20
Alignment explanation
Indices: 34825--34887 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
34815 ACCAAATATA
34825 AAACA-AAAATAAAAAA-AT
1 AAACATAAAATAAAAAACAT
* * *
34843 ACAAAATAGAATATAAAACAT
1 A-AACATAAAATAAAAAACAT
34864 AAACATAAACATAAAAAACAT
1 AAACATAAA-ATAAAAAACAT
34885 AAA
1 AAA
34888 TCAATATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 1 0.03
19 3 0.09
20 15 0.43
21 16 0.46
ACGTcount: A:0.75, C:0.10, G:0.02, T:0.14
Consensus pattern (20 bp):
AAACATAAAATAAAAAACAT
Found at i:35088 original size:14 final size:15
Alignment explanation
Indices: 35063--35092 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
35053 CATGGTCTAT
35063 AAAATAGAAATATAA
1 AAAATAGAAATATAA
35078 AAAATAG-AATATAA
1 AAAATAGAAATATAA
35092 A
1 A
35093 CCGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (15 bp):
AAAATAGAAATATAA
Found at i:35274 original size:15 final size:15
Alignment explanation
Indices: 35250--35289 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
35240 TAGAATATTT
35250 AATA-AAAATAAAAA
1 AATAGAAAATAAAAA
35264 AATAGAAAAT-AAAA
1 AATAGAAAATAAAAA
35278 AATAGAATAATA
1 AATAGAA-AATA
35290 TACCTGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (15 bp):
AATAGAAAATAAAAA
Found at i:35609 original size:19 final size:19
Alignment explanation
Indices: 35573--35610 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35563 GAAGAGTTGT
*
35573 ATTTATTTTGGAACGAATA
1 ATTTATTTGGGAACGAATA
35592 ATTTATTTAGGGAA-GAATA
1 ATTTATTT-GGGAACGAATA
35611 GATGAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (19 bp):
ATTTATTTGGGAACGAATA
Found at i:35669 original size:103 final size:102
Alignment explanation
Indices: 35517--35887 Score: 421
Period size: 103 Copynumber: 3.7 Consensus size: 102
35507 ACATATAAAG
* * *
35517 ATAGGGGTTAGGGTTTGTG-TTTGATCGAGAAAAATAGAAATCGAAGGAAGAGTTGTATTTATTT
1 ATAGGGGTTAGGGTTTGTGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATTT
*
35581 TGGAACGAATAATTTATTTAGGGAAGAATAGATGAATA
66 TGGATCGAAT-ATTTATTTAGGGAAGAATAGATGAATA
* * **
35619 ATAGGGGTTAAGGTTTGTGTTTTGATCGAGAAAAACAAAAAAAGAAGGAAGATTTGTGTTTATTT
1 ATAGGGGTTAGGGTTTGTGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATTT
* ** * *
35684 TGGATCGGATGGGTTATTTAGGGAATAATAAATGAATA
66 TGGATCGAAT-ATTTATTTAGGGAAGAATAGATGAATA
** *
35722 ACTA-GAATTAGGGTTTATGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATT
1 A-TAGGGGTTAGGGTTTGTGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATT
35786 TTGGATCGAATATGTTATTTA-GG--G---A-A-G---A
65 TTGGATCGAATAT-TTATTTAGGGAAGAATAGATGAATA
* * *
35814 ATA-GGGTTAGGGTTTGTGTTTTGATCCA-AAAAACAGAAATCGACGGAAGGTTTGTGTTTATTT
1 ATAGGGGTTAGGGTTTGTGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATTT
*
35877 TGGATTGAATA
66 TGGATCGAATA
35888 GGGTTTTTAA
Statistics
Matches: 234, Mismatches: 32, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
90 43 0.18
91 23 0.10
92 2 0.01
95 1 0.00
96 1 0.00
97 1 0.00
102 20 0.09
103 141 0.60
104 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (102 bp):
ATAGGGGTTAGGGTTTGTGTTTTGATCGAGAAAAACAGAAATCGAAGGAAGATTTGTGTTTATTT
TGGATCGAATATTTATTTAGGGAAGAATAGATGAATA
Found at i:35945 original size:102 final size:101
Alignment explanation
Indices: 35826--36049 Score: 254
Period size: 102 Copynumber: 2.2 Consensus size: 101
35816 AGGGTTAGGG
* * * ** *
35826 TTTGTGTTTTGATCCAAAAAACAGAAATCGACGGAAGGTTTGTGTTTATTTTGGATTGAATAGG-
1 TTTGTGTTTTGATCCAAAAAACACAAAACGAAGGAAGAATTGTGTTTATTTTGGATCGAAT-GGA
* **
35890 GTTTTTAAGG-ATGAACAAATGAAGAACACAAATGGGTT
65 CTTTTT-AGGAATGAACAAATGAAGAACAC-AATGCATT
* *
35928 TTTGTGTTTTGATCCAAAAAACACAAAAGGAATGAAGAATTGTGTTTATTTTGGATCGAATGGAC
1 TTTGTGTTTTGATCCAAAAAACACAAAACGAAGGAAGAATTGTGTTTATTTTGGATCGAATGGAC
* * * *
35993 TTTTTAGGAATGAGCAACTGAATAACACAATTCATT
66 TTTTTAGGAATGAACAAATGAAGAACACAATGCATT
* *
36029 TTTGTGGTTTGATCGAAAAAA
1 TTTGTGTTTTGATCCAAAAAA
36050 TGAAAAGATT
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
101 29 0.28
102 74 0.72
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (101 bp):
TTTGTGTTTTGATCCAAAAAACACAAAACGAAGGAAGAATTGTGTTTATTTTGGATCGAATGGAC
TTTTTAGGAATGAACAAATGAAGAACACAATGCATT
Found at i:36355 original size:7 final size:7
Alignment explanation
Indices: 36343--36399 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
36333 ATTTTATACT
36343 TATATTA
1 TATATTA
36350 TATATTA
1 TATATTA
36357 TAATACATTA
1 T-AT--ATTA
36367 TA-ATTA
1 TATATTA
*
36373 -A-AAT-
1 TATATTA
36377 TATATTA
1 TATATTA
36384 TATATTA
1 TATATTA
36391 TATATTA
1 TATATTA
36398 TA
1 TA
36400 ATACATTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
5 4 0.10
6 6 0.14
7 24 0.57
8 2 0.05
9 1 0.02
10 5 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (7 bp):
TATATTA
Found at i:36394 original size:2 final size:2
Alignment explanation
Indices: 36377--36539 Score: 60
Period size: 2 Copynumber: 82.0 Consensus size: 2
36367 TAATTAAAAT
* *
36377 TA TA T- TA TA TA T- TA TA TA T- TA TA -A TA CA T- TA TA GTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * *
36415 TA -A TT TA TA TA TA AA CTA TA -A GTA TA TA TA TA GTT TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA -TA TA TA TA
* * *
36456 -A TA TA GTT TA TA GTA TA TA TA TA -A TT TA TA TA TA GTT TA TA
1 TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * *
36497 TA -A CA TA GTT TA TA TA TA GTA TA TA GTT TA TA TA TA T- TA TA
1 TA TA TA TA -TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
36538 TA
1 TA
36540 AATAAACTAT
Statistics
Matches: 119, Mismatches: 21, Indels: 42
0.65 0.12 0.23
Matches are distributed among these distances:
1 11 0.09
2 96 0.81
3 12 0.10
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36461 original size:14 final size:14
Alignment explanation
Indices: 36437--36512 Score: 79
Period size: 14 Copynumber: 5.4 Consensus size: 14
36427 AAACTATAAG
36437 TATAT-ATATAGTT
1 TATATAATATAGTT
36450 TATATAATATAGTT
1 TATATAATATAGTT
36464 TATAGTATATATA-TAAT
1 TATA-TA-ATATAGT--T
36481 T-TAT-ATATAGTT
1 TATATAATATAGTT
*
36493 TATATAACATAGTT
1 TATATAATATAGTT
36507 TATATA
1 TATATA
36513 TAGTATATAG
Statistics
Matches: 54, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
12 2 0.04
13 13 0.24
14 26 0.48
15 4 0.07
16 7 0.13
17 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (14 bp):
TATATAATATAGTT
Found at i:36497 original size:43 final size:42
Alignment explanation
Indices: 36413--36540 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 42
36403 CATTATAGTT
* * *
36413 TATAATTTATATATAAACTATAAGTATATATATAGTTTATATAA
1 TATAGTTTATATATATA-TATAA-TTTATATATAGTTTATATAA
36457 TATAGTTTATAGTATATATATAATTTATATATAGTTTATATAA
1 TATAGTTTATA-TATATATATAATTTATATATAGTTTATATAA
* *
36500 CATAGTTTATATATAGTATATAGTTTATATATA--TTATATAA
1 TATAGTTTATATATA-TATATAATTTATATATAGTTTATATAA
36541 ATAAACTATA
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
41 8 0.10
42 4 0.05
43 45 0.58
44 15 0.19
45 5 0.06
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (42 bp):
TATAGTTTATATATATATATAATTTATATATAGTTTATATAA
Found at i:36649 original size:28 final size:27
Alignment explanation
Indices: 36618--36721 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 27
36608 TTATAGTTTA
*
36618 TATATAGTATATAGTATTAATGTATACT
1 TATATAGTATATAGTA-TAATATATACT
* *
36646 TATA-A-TGTAT-GCATAA-ATATACT
1 TATATAGTATATAGTATAATATATACT
* * *
36669 TATATTAGTTTATAATATATTATATACT
1 TATA-TAGTATATAGTATAATATATACT
36697 TATATAAGTATATACGTATAATATA
1 TATAT-AGTATATA-GTATAATATA
36722 CGCATAAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
23 10 0.17
24 3 0.05
25 3 0.05
26 8 0.14
27 5 0.08
28 22 0.37
29 8 0.14
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (27 bp):
TATATAGTATATAGTATAATATATACT
Found at i:36718 original size:67 final size:65
Alignment explanation
Indices: 36611--36743 Score: 162
Period size: 67 Copynumber: 2.0 Consensus size: 65
36601 ATATAGTTTA
* * * *
36611 TAGTTTATATATAGTATATAGTATTAATGTATACTTATAATGTATGCATAAATAT-AC-TTATAT
1 TAGTTTATATATAGTATATAGTATTAATATATACGTATAATATACGCATAAATATAACATTATAT
* *
36674 TAGTTTATAATATATTATATACTTATATAAGTATATACGTATAATATACGCATAAATATAACATT
1 TAGTTTAT-ATATAGTATATA-GTAT-TAA-TATATACGTATAATATACGCATAAATATAACATT
36739 ATAT
62 ATAT
36743 T
1 T
36744 TTACAATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
63 8 0.14
64 11 0.19
65 3 0.05
66 3 0.05
67 24 0.41
68 2 0.03
69 7 0.12
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (65 bp):
TAGTTTATATATAGTATATAGTATTAATATATACGTATAATATACGCATAAATATAACATTATAT
Found at i:37125 original size:2 final size:2
Alignment explanation
Indices: 37118--37158 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
37108 CACAATCATT
37118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37159 TAATTTACTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:38405 original size:2 final size:2
Alignment explanation
Indices: 38398--38451 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
38388 CATGATTCAC
38398 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
38440 TT CT CT CT CT CT
1 CT CT CT CT CT CT
38452 ATATATATAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:38456 original size:2 final size:2
Alignment explanation
Indices: 38451--38501 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
38441 TCTCTCTCTC
38451 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38493 TA TA TA TA T
1 TA TA TA TA T
38502 CCTCTCTTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:40525 original size:24 final size:23
Alignment explanation
Indices: 40474--40528 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
40464 TTACGCTCGG
*
40474 TTATGTTCGTTTATGTTATTTTGA
1 TTATGTTCGTTTATGTTATTAT-A
40498 TTATGTTCGTTTATGTTCATTCAT-
1 TTATGTTCGTTTATGTT-ATT-ATA
40522 TTATGTT
1 TTATGTT
40529 TAACCCAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 24 0.86
25 3 0.11
26 1 0.04
ACGTcount: A:0.16, C:0.07, G:0.15, T:0.62
Consensus pattern (23 bp):
TTATGTTCGTTTATGTTATTATA
Found at i:41402 original size:12 final size:12
Alignment explanation
Indices: 41385--41429 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
41375 TGTTGAGCTT
41385 GAATCGAGCTCA
1 GAATCGAGCTCA
* *
41397 GAATCGACCT-T
1 GAATCGAGCTCA
*
41408 TAATCGAGCTCA
1 GAATCGAGCTCA
41420 GAATCGAGCT
1 GAATCGAGCT
41430 TCAATCGAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
11 8 0.31
12 18 0.69
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (12 bp):
GAATCGAGCTCA
Found at i:41459 original size:24 final size:24
Alignment explanation
Indices: 41379--41464 Score: 95
Period size: 23 Copynumber: 3.7 Consensus size: 24
41369 GGGCAATGTT
*
41379 GAGCTTGAATCGAGC-TCAGAATC
1 GAGCTTTAATCGAGCTTCAGAATC
*
41402 GACCTTTAATCGAGC-TCAGAATC
1 GAGCTTTAATCGAGCTTCAGAATC
* * **
41425 GAGCTTCAATCGAGCTTGAGTCTC
1 GAGCTTTAATCGAGCTTCAGAATC
*
41449 GAGTTTTAATCGAGCT
1 GAGCTTTAATCGAGCT
41465 CTTAAATTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 34 0.64
24 19 0.36
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
GAGCTTTAATCGAGCTTCAGAATC
Found at i:41782 original size:16 final size:16
Alignment explanation
Indices: 41761--41791 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
41751 AAAAAAATTA
41761 TTCGTTTATGTTCGTG
1 TTCGTTTATGTTCGTG
41777 TTCGTTTATGTTCGT
1 TTCGTTTATGTTCGT
41792 TTATTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.13, G:0.23, T:0.58
Consensus pattern (16 bp):
TTCGTTTATGTTCGTG
Found at i:46628 original size:29 final size:29
Alignment explanation
Indices: 46593--46674 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
46583 AAACTAAATT
*
46593 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
46622 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
46651 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
46675 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:51399 original size:29 final size:29
Alignment explanation
Indices: 51364--51445 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
51354 AAACTAAATT
*
51364 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
51393 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
51422 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
51446 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:54337 original size:3 final size:3
Alignment explanation
Indices: 54329--54385 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
54319 TTATTCTCTT
54329 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
54377 CTC CTC CTC
1 CTC CTC CTC
54386 GGAAACTATA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CTC
Found at i:59370 original size:17 final size:17
Alignment explanation
Indices: 59338--59369 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59328 AAATAATATA
59338 ATGTGAATTATATTTTC
1 ATGTGAATTATATTTTC
59355 ATGTGAATTAT-TTTT
1 ATGTGAATTATATTTT
59370 TAAATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.56
Consensus pattern (17 bp):
ATGTGAATTATATTTTC
Found at i:59388 original size:43 final size:44
Alignment explanation
Indices: 59306--59390 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 44
59296 TTTTACTTTT
59306 TTTTCATGTGAATTATTTTTTTAAATAATATAATGTGAATTATA
1 TTTTCATGTGAATTATTTTTTTAAATAATATAATGTGAATTATA
*
59350 TTTTCATGTGAATTA-TTTTTTAAATAATATAATTTGAATTA
1 TTTTCATGTGAATTATTTTTTTAAATAATATAATGTGAATTA
59391 AGATACATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 25 0.62
44 15 0.38
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.53
Consensus pattern (44 bp):
TTTTCATGTGAATTATTTTTTTAAATAATATAATGTGAATTATA
Found at i:64493 original size:16 final size:16
Alignment explanation
Indices: 64464--64494 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64454 TATTATTGAA
64464 CTGATCTGATATTTAT
1 CTGATCTGATATTTAT
*
64480 CTGATTTGATATTTA
1 CTGATCTGATATTTA
64495 CCTAAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.52
Consensus pattern (16 bp):
CTGATCTGATATTTAT
Found at i:64732 original size:3 final size:3
Alignment explanation
Indices: 64724--64816 Score: 186
Period size: 3 Copynumber: 31.0 Consensus size: 3
64714 GTCTAATTTA
64724 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
64772 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
64817 AGTCTTATGG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:64986 original size:2 final size:2
Alignment explanation
Indices: 64981--67294 Score: 3890
Period size: 2 Copynumber: 1193.0 Consensus size: 2
64971 TTTATACACT
64981 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65023 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65065 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65107 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65148 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65190 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65232 TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65272 TG TG TG -G TG TG TG TG TG T- TG TG TG TG -G TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65311 TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TG T- TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65352 TG TG TG TG GG TG TG TG TG TG TG -G TG TG TG TG TG TG TG -G TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65392 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG T- TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65432 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65474 TG TG TG TG TG TG -G TG TG TG TG TG TG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65514 TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65555 TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG -G TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65595 TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65635 TG TG -G TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG -G
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65674 TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65715 TG GG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65756 TG TG TG TG GG TG T- TG TG TG TG TG TG -G TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65796 TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65838 TG TG TG TG TG TG -G TG TG TG GG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
65879 TG TG TG GG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
65920 TG TG TG -G TG TG TG TG GG TG TG TG TG TG TG TG TG TG TG GG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
65961 TG TG TG TG TG TG TG -G TG TG TG TG TG TG T- TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66000 TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TT TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66041 TG TG TG TG TG TG -G TG TG TG GG TG TG -G TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
66081 TG GG GG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66122 TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66163 -G TG TG TG TG TG TG TG T- TG TG TG TG TG -G TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66202 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66243 TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66284 GG TG TG TG TG TG TG TG T- TG TG -G TG TG TG TG -G TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66323 TG GG TG TG TG -G T- TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66363 TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
66404 GG TG TG TG TG TG TG TG TG TG TG TG T- TG -G TG TG TG GG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66444 TT TG TG -G TG -G TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66483 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
66525 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66567 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
66609 TG TG -G T- TG TG TG TG TG TG TG GG TG GG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66649 TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66690 TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
66731 TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TG GG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66773 TG TG TG -G TG T- TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66812 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66853 TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66893 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66935 TG TG TG TG TG TG TG -G TG TG TG TG TG TG T- TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66975 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67017 TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67058 -G TG -G TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
67097 TG -G TG TG TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67138 TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
67179 TG TG TG TG TG TG TG TG TG TG GG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67221 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67263 TG TG TG T- TG TG TG TG TG TG TG TG -G TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
Statistics
Matches: 2190, Mismatches: 50, Indels: 144
0.92 0.02 0.06
Matches are distributed among these distances:
1 72 0.03
2 2118 0.97
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
TG
Done.