genome.fa.s7464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007464.1 Hibiscus syriacus cultivar Beakdansim tig00020478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74203

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836--881	14	3.3	13	85	11	56	47	2	2	47	1.26
8036--8125	7	12.9	7	70	23	57	81	3	13	2	0.92
8034--8126	16	5.8	16	78	12	75	80	4	12	2	0.95
8052--8138	11	7.4	11	78	17	61	80	2	14	2	0.91
8052--8114	26	2.5	25	87	10	92	82	3	14	0	0.79
8045--8119	14	5.4	14	80	15	77	80	4	14	1	0.93
8035--8129	14	6.8	13	75	15	75	81	3	13	2	0.91
15908--15997	34	2.6	34	94	0	153	24	28	16	30	1.97
16342--16422	19	4.1	20	85	6	101	14	29	34	20	1.93
16342--16422	21	4.0	21	80	15	91	14	29	34	20	1.93
16388--16429	19	2.3	19	83	4	50	23	33	16	26	1.96
18761--18885	34	3.7	34	96	0	214	25	28	17	28	1.98
22098--22177	37	2.2	37	90	4	126	23	15	18	42	1.88
22106--22193	37	2.4	37	88	3	124	23	17	17	42	1.89
22168--22337	81	2.1	81	89	0	259	27	17	15	40	1.89
22237--22271	15	2.3	15	90	0	52	22	17	20	40	1.92
22283--22376	36	2.6	36	85	6	111	26	14	15	42	1.86
22249--22440	102	1.9	101	89	3	296	30	16	14	39	1.88
22319--22507	65	2.9	67	89	4	285	29	15	15	38	1.89
22092--22432	183	1.9	185	89	1	533	28	16	15	39	1.89
22511--22901	138	2.8	138	87	1	543	29	28	15	26	1.96
24290--24328	20	2.0	20	85	5	53	33	20	5	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31991--32023	8	4.1	8	100	0	66	63	12	0	24	1.28
32206--32251	20	2.3	20	84	0	65	34	17	23	23	1.96
32694--32764	34	2.1	33	86	2	97	32	15	28	23	1.95
33399--33467	35	2.0	35	83	11	88	23	23	17	36	1.95
38589--38622	12	2.8	12	83	16	52	26	5	29	38	1.80
47356--47401	23	2.0	23	86	0	65	30	32	21	15	1.94
48633--48702	32	2.2	32	81	0	86	31	27	17	24	1.97
48728--48782	15	3.4	16	85	7	67	50	30	5	12	1.63
49520--49572	21	2.4	23	81	9	65	54	1	3	39	1.29
52128--52188	8	7.4	8	73	12	52	72	1	19	6	1.16
52144--52188	15	2.8	16	90	10	65	75	0	17	6	1.01
54899--54935	17	2.1	18	90	5	58	72	0	2	24	0.97
54897--54950	21	2.6	19	80	13	63	70	0	7	22	1.12
55530--55563	14	2.5	14	90	4	52	79	0	11	8	0.94
56497--56523	5	5.4	5	100	0	54	18	0	18	62	1.32
56986--57065	40	2.0	40	87	0	115	21	25	25	28	1.99
59247--59275	11	2.5	12	88	11	51	6	20	0	72	1.07
64746--64849	43	2.2	45	81	13	113	52	14	0	32	1.42
70076--70134	22	2.7	22	86	5	84	35	18	18	27	1.94
71563--71587	13	1.9	13	100	0	50	20	16	32	32	1.94

Tables:   1

The End!