genome.fa.s7467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007467.1 Hibiscus syriacus cultivar Beakdansim tig00020492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71794

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10212--10270	22	2.7	22	81	5	75	35	20	18	25	1.95
11702--11726	13	1.9	13	100	0	50	20	16	32	32	1.94
19779--20296	229	2.3	227	79	5	533	37	21	13	27	1.91
20990--21015	3	8.7	3	100	0	52	30	0	0	69	0.89
21357--21394	20	1.9	19	85	15	51	68	0	23	7	1.16
21896--21981	2	43.0	2	100	0	172	50	0	0	50	1.00
23691--23818	36	3.5	38	72	19	112	42	3	6	47	1.44
23691--23831	38	4.0	33	75	18	108	42	4	6	46	1.48
23874--23940	25	2.6	25	74	11	64	41	1	7	49	1.40
23891--24074	100	1.8	100	87	4	273	43	3	5	47	1.44
23963--24049	37	2.3	37	88	2	120	47	3	2	47	1.32
24085--24151	4	18.2	4	79	17	74	23	1	0	74	0.90
25371--25435	27	2.4	28	79	7	71	20	9	1	69	1.24
30666--31196	84	6.4	85	79	5	579	28	25	22	22	1.99
30666--31274	81	7.4	79	77	7	588	29	25	22	23	1.99
30666--31248	165	3.5	165	98	0	1105	28	25	21	23	1.99
31864--32240	37	10.0	37	71	16	181	44	3	6	45	1.47
31838--32005	75	2.3	72	81	10	198	41	3	7	47	1.49
32053--32119	25	2.6	25	74	11	64	41	1	7	49	1.40
32075--32156	34	2.3	35	87	4	112	46	2	6	45	1.41
32070--32253	100	1.8	100	87	4	273	43	3	5	47	1.44
32264--32326	4	17.2	4	78	18	66	23	1	0	74	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33540--33603	27	2.3	27	79	12	69	20	9	1	68	1.25
33548--33603	27	2.1	27	83	9	71	21	8	1	67	1.27
34692--34736	21	2.1	21	83	0	54	31	8	6	53	1.58
37568--37608	18	2.4	17	84	11	57	39	0	0	60	0.96
40803--40849	17	2.5	20	83	10	55	63	0	0	36	0.94
47512--47623	20	5.5	21	70	13	63	31	20	17	30	1.96
47582--47625	20	2.2	20	91	0	70	36	22	18	22	1.95
47616--47664	20	2.5	20	96	0	89	44	24	12	18	1.84
47818--47864	22	2.1	22	92	0	76	23	40	12	23	1.89
48023--48068	20	2.3	20	100	0	92	43	15	4	36	1.66
48256--48322	20	3.4	20	93	2	109	13	17	19	49	1.80
49998--50047	21	2.4	21	82	0	64	22	14	32	32	1.93
50455--50553	21	4.7	21	82	3	101	25	33	18	23	1.97
50451--50573	42	2.9	40	78	9	129	23	34	18	22	1.96
50503--50573	21	3.4	21	82	0	61	22	35	22	19	1.96
51575--51605	13	2.3	14	94	5	55	32	0	19	48	1.49
51584--51735	64	2.4	64	90	2	227	27	2	18	51	1.59
52941--52977	18	2.1	18	89	0	56	51	10	5	32	1.60
53363--53412	25	2.0	25	96	0	91	44	20	6	30	1.75
53487--53527	20	2.0	20	95	0	73	39	24	19	17	1.92
53541--53646	49	2.2	49	82	0	122	32	17	20	29	1.96
56182--56228	24	2.0	24	95	0	85	34	17	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56186--56237	24	2.2	24	85	0	68	36	19	19	25	1.95
57194--57311	20	5.9	19	77	14	87	31	12	22	33	1.92
57213--57313	20	5.0	20	83	5	123	28	11	25	33	1.91
57213--57413	40	5.0	39	70	15	133	26	12	25	34	1.92
57161--57313	61	2.5	61	82	8	163	30	11	23	33	1.91
57278--57413	60	2.3	61	78	8	145	24	13	25	36	1.93
57321--57388	20	3.4	20	80	9	68	26	13	25	35	1.92
57342--57395	20	2.7	21	85	5	67	33	9	24	33	1.87
64696--64724	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1

The End!