genome.fa.s7468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007468.1 Hibiscus syriacus cultivar Beakdansim tig00020502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67321

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042--1208	65	2.6	64	83	7	196	32	23	17	26	1.96
1174--1269	28	3.5	28	95	1	176	29	22	16	31	1.96
7998--8080	23	3.8	21	77	10	78	25	28	22	22	1.99
7999--8057	23	2.6	22	86	2	82	23	28	25	22	1.99
9913--9959	22	2.0	23	84	8	60	53	10	2	34	1.48
10948--10978	14	2.2	14	94	0	53	16	19	6	58	1.59
13233--13276	23	1.9	22	81	9	52	81	0	15	2	0.78
13236--13278	18	2.4	18	80	7	52	81	0	16	2	0.79
15645--15846	75	2.7	74	86	3	287	29	17	22	30	1.96
16660--16818	54	2.9	54	87	1	221	37	13	23	25	1.91
17879--18371	45	10.9	45	90	0	736	23	23	18	33	1.97
18381--18475	45	2.1	45	84	0	118	27	21	18	32	1.97
18650--18685	3	12.0	3	100	0	72	33	0	0	66	0.92
21118--21199	42	2.0	42	85	4	112	31	18	17	32	1.94
21290--21515	37	6.2	35	77	15	135	45	4	7	42	1.54
21308--21515	38	5.7	35	79	11	188	44	5	8	41	1.56
21291--21525	73	3.2	70	73	21	198	44	4	7	42	1.53
21288--21543	38	7.0	37	76	15	150	44	4	7	43	1.52
21565--21639	20	3.5	22	76	23	65	41	2	1	54	1.23
21605--21661	13	4.3	13	72	10	53	33	0	0	66	0.92
21607--21663	12	4.2	13	72	14	53	33	0	0	66	0.92
23986--24018	14	2.3	15	89	5	50	24	6	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24028--24057	13	2.3	13	94	0	51	6	16	0	76	0.99
27197--27352	85	1.8	85	87	0	231	35	19	17	27	1.94
27005--28002	285	3.5	284	85	2	1261	33	18	19	27	1.96
27482--27654	85	2.0	85	84	0	220	36	20	15	26	1.93
27769--27935	83	2.0	85	83	2	212	34	18	18	28	1.95
28524--28632	37	2.9	39	82	11	138	45	4	8	41	1.54
38717--38841	25	5.0	25	100	0	250	28	16	20	36	1.93
38909--38945	3	12.3	3	88	11	58	70	0	0	29	0.88
39158--39386	40	5.5	40	76	10	176	24	17	33	24	1.97
39104--39419	40	7.4	42	73	14	158	24	18	31	25	1.98
39973--40016	15	2.9	15	93	0	70	43	4	20	31	1.72
40472--40669	67	3.0	67	87	2	229	45	11	13	29	1.79
40532--40653	37	3.5	36	73	15	130	44	10	13	31	1.77
40514--40669	67	2.3	67	93	2	260	45	10	12	30	1.77
40656--40759	52	2.0	53	92	1	174	36	17	13	32	1.89
40755--40876	29	4.4	27	80	10	92	46	14	10	27	1.78
40770--40870	29	3.7	28	83	10	120	44	16	9	28	1.80
41114--41217	36	3.0	36	81	4	124	35	11	20	32	1.88
41115--41233	36	3.4	36	79	6	111	36	12	21	30	1.90
41185--41422	105	2.3	102	81	9	268	38	11	19	30	1.87
41869--41918	4	13.0	4	83	8	68	24	0	26	50	1.50
43098--43138	11	3.6	11	93	6	73	7	9	9	73	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43097--43143	12	3.9	12	86	8	69	6	10	10	72	1.28
43122--43168	18	2.6	17	75	21	51	4	12	14	68	1.36
43091--43161	11	6.6	11	70	10	58	4	12	9	73	1.23
45282--45343	32	2.0	32	96	3	117	61	9	14	14	1.57
49503--49602	25	4.0	25	100	0	200	28	16	20	36	1.93
49670--49709	3	13.3	3	89	10	64	70	0	0	30	0.88
49662--49705	22	2.0	22	91	8	72	68	2	0	29	1.02
55510--55580	35	2.1	35	89	2	108	36	7	14	42	1.72
57386--57454	36	1.9	35	88	2	102	31	10	17	40	1.83
63810--63891	34	2.4	34	93	0	137	34	29	10	25	1.90
63869--63989	63	1.9	64	90	6	194	32	23	15	28	1.95
63867--64012	63	2.3	63	80	5	172	33	23	15	26	1.95
65877--65919	21	2.0	20	83	16	52	53	4	4	37	1.43
65887--65929	21	2.0	22	86	13	63	53	4	6	34	1.49

Tables:   1

The End!