genome.fa.s747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000747.1 Hibiscus syriacus cultivar Beakdansim tig00001440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67828

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412--456	17	2.5	19	82	10	58	53	2	2	42	1.25
6135--6176	19	2.2	20	86	4	59	42	0	2	54	1.13
10370--10441	34	2.1	34	100	0	144	38	18	15	27	1.90
12585--12619	16	2.2	16	94	0	61	25	28	17	28	1.97
13187--13230	22	2.0	22	100	0	88	31	4	18	45	1.69
15084--15128	20	2.2	20	100	0	90	40	17	22	20	1.92
16880--16948	23	3.0	23	78	0	75	33	24	23	18	1.97
18754--18798	21	2.1	21	87	0	63	31	28	24	15	1.96
20167--20294	31	4.1	31	80	9	152	26	18	21	33	1.96
20253--20349	30	3.2	30	88	1	113	22	20	24	31	1.98
20280--20352	30	2.4	30	95	0	128	24	20	24	30	1.99
21504--21561	20	2.7	20	86	10	71	27	22	18	31	1.97
23177--23384	2	109.0	2	65	26	71	45	5	4	44	1.46
24042--24074	15	2.2	15	100	0	66	39	27	0	33	1.57
31555--32749	408	2.9	407	95	1	2166	27	20	19	33	1.96
34909--34967	30	2.0	30	83	6	75	45	8	5	40	1.56
38106--38133	2	14.0	2	100	0	56	50	0	0	50	1.00
39046--39161	21	5.6	21	66	15	80	18	17	26	37	1.93
39052--39177	42	3.0	42	87	4	193	19	16	24	38	1.92
39093--39152	19	3.1	19	70	4	57	20	16	28	35	1.94
39081--39177	21	4.8	19	65	12	50	21	16	21	40	1.91
39260--39297	6	6.7	6	96	3	62	28	52	18	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39930--40064	63	2.1	63	93	0	225	33	25	20	21	1.97
39993--40144	42	3.7	42	93	1	254	34	23	20	21	1.97
39905--40106	105	1.9	105	92	0	341	34	23	19	22	1.96
39909--40135	105	2.2	104	88	4	323	35	22	20	22	1.96
39902--40144	21	11.7	21	73	14	191	34	22	20	23	1.97
41568--41609	22	1.9	22	85	0	57	30	9	21	38	1.85
47009--47063	22	2.5	22	78	0	65	30	9	21	38	1.85
50278--50327	22	2.3	22	96	0	91	36	20	10	34	1.86
56693--56807	42	2.7	42	90	0	176	20	13	17	49	1.79
56978--57061	30	2.7	30	78	14	91	51	1	0	47	1.08
57103--57137	17	2.1	17	88	0	52	51	0	2	45	1.16
57217--57284	30	2.3	31	80	14	81	51	2	0	45	1.16
57515--57558	15	3.0	15	76	6	54	31	18	6	43	1.76
57537--57578	21	2.0	21	90	0	66	30	21	2	45	1.65
59008--59048	21	2.0	21	90	9	68	34	2	0	63	1.08

Tables:   1

The End!