genome.fa.s7470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007470.1 Hibiscus syriacus cultivar Beakdansim tig00020517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76694

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953--13227	55	5.0	55	89	4	401	35	10	17	35	1.85
12953--13227	111	2.5	110	88	3	408	35	10	17	35	1.85
12963--13299	55	6.1	53	83	7	248	35	10	17	35	1.84
13519--13606	46	1.9	46	97	0	167	44	12	23	19	1.85
20484--20523	20	2.0	20	85	5	53	72	0	17	10	1.11
21883--22027	59	2.4	60	93	3	238	35	15	9	39	1.80
22750--22794	13	3.3	15	76	17	53	53	0	0	46	1.00
23111--23209	42	2.4	42	93	3	166	12	13	37	37	1.81
23324--23358	18	1.9	18	88	0	52	51	0	0	48	1.00
23688--23735	25	1.9	25	91	0	78	14	22	18	43	1.87
34420--34556	51	2.7	52	80	4	170	27	10	15	47	1.77
35277--35328	20	2.6	20	96	0	95	30	30	19	19	1.96
44011--44098	45	1.9	46	88	6	135	28	23	18	29	1.98
46206--46322	60	2.0	60	81	3	137	28	23	21	26	1.99
48827--48880	3	18.0	3	78	14	58	29	33	1	35	1.69
49801--49827	2	13.5	2	100	0	54	51	0	0	48	1.00
50946--50981	15	2.3	16	90	4	56	61	0	2	36	1.11
52406--52450	2	22.5	2	95	0	81	46	0	2	51	1.13
53629--53665	17	2.1	18	90	5	58	37	0	0	62	0.96
53942--53996	25	2.2	25	83	3	65	49	5	16	29	1.68
54097--54195	51	1.9	51	89	0	153	52	4	3	40	1.36
57018--57052	16	2.2	16	100	0	70	20	40	5	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58713--59055	49	7.0	49	88	0	488	26	21	13	38	1.91
65682--66024	49	7.0	49	87	0	479	26	20	13	39	1.90
69452--69490	17	2.2	17	86	4	51	61	10	15	12	1.56
71299--71368	34	2.1	34	86	5	99	22	30	15	31	1.95
74653--74724	34	2.2	33	85	7	92	22	30	15	31	1.94

Tables:   1

The End!