Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007471.1 Hibiscus syriacus cultivar Beakdansim tig00020520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86040

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424--572
79
1.9
79
91
0
244
33
28
15
22
1.95
424--572
40
3.8
40
90
1
237
33
28
15
22
1.95
3261--3308
14
3.4
14
75
11
53
22
27
20
29
1.99
5255--5454
96
2.1
96
88
1
294
26
14
17
41
1.88
8739--8790
21
2.5
21
96
0
95
38
19
17
25
1.93
8853--9767
449
2.0
449
90
0
1438
40
13
14
31
1.85
9380--10090
388
1.8
385
89
3
1113
40
13
14
30
1.85
15831--15886
10
5.5
10
75
10
51
71
0
5
23
1.06
15860--15892
16
1.9
18
88
11
52
63
0
3
33
1.10
18515--18541
13
2.1
13
100
0
54
48
14
0
37
1.45
31216--31258
20
2.2
20
86
0
59
34
20
13
30
1.92
36751--36802
21
2.5
20
76
14
52
32
17
5
44
1.72
40654--40692
2
20.5
2
84
10
55
46
51
0
2
1.14
40654--40692
13
2.8
13
92
7
60
46
51
0
2
1.14
40654--40692
17
2.3
17
95
0
69
46
51
0
2
1.14
40692--40721
2
15.0
2
100
0
60
50
0
0
50
1.00
40856--41474
107
5.6
106
67
15
333
33
16
12
37
1.87
41254--41296
22
2.0
22
90
0
68
27
20
13
37
1.91
40867--41560
223
3.1
224
88
3
959
32
15
13
38
1.87
44687--45006
160
2.0
160
98
0
622
34
10
13
41
1.78
45101--45189
44
2.0
44
86
4
126
42
1
11
44
1.47
47047--47103
26
2.2
26
90
0
87
31
21
22
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48311--48413
45
2.3
46
85
6
140
43
7
13
34
1.73
48771--48847
39
2.0
39
86
0
109
40
9
11
38
1.73
48868--48966
39
2.5
39
86
0
135
40
7
15
37
1.74
56252--56303
21
2.5
21
81
9
63
36
13
19
30
1.90
56786--56844
15
3.9
14
80
10
64
40
3
15
40
1.64
56822--56873
15
3.4
15
78
5
59
42
7
19
30
1.79
56823--56872
16
3.2
16
80
2
57
44
8
18
30
1.78
57004--57059
25
2.3
24
87
3
76
23
23
17
35
1.95
58174--58226
27
1.9
28
85
11
74
24
11
24
39
1.88
59660--59692
16
2.1
16
88
5
50
27
6
6
60
1.44
60734--60801
34
2.0
35
85
2
93
39
10
8
41
1.70
61288--61330
20
2.2
20
86
0
59
25
0
2
72
0.97
64715--64964
126
2.0
126
90
0
392
26
9
23
41
1.84
68364--68420
3
18.3
3
78
7
60
33
1
1
63
1.15
71918--71961
21
2.1
21
83
8
54
29
20
20
29
1.98
72445--72491
24
2.0
24
84
12
62
29
14
14
40
1.87
73143--73173
16
1.9
16
93
0
53
48
3
19
29
1.64
73835--73868
17
2.1
17
88
5
52
32
0
14
52
1.42
74450--74475
8
3.2
8
100
0
52
23
38
11
26
1.89
78435--78460
12
2.2
12
100
0
52
84
0
7
7
0.77

Tables:   1

The End!