Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007472.1 Hibiscus syriacus cultivar Beakdansim tig00020528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61028

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1716--1754
18
2.2
18
86
9
53
41
0
0
58
0.98
3134--3174
21
2.0
21
95
0
73
46
14
21
17
1.84
3135--3185
21
2.4
21
87
6
68
47
17
19
15
1.83
9419--9503
36
2.3
36
88
9
120
34
21
17
27
1.96
9489--9880
214
1.8
213
93
1
687
32
16
19
31
1.94
9880--10356
215
2.2
215
91
2
762
32
14
20
32
1.93
10257--10356
41
2.4
41
81
4
121
25
21
23
31
1.98
10364--10507
56
2.6
56
85
4
191
33
18
20
27
1.96
12764--12806
18
2.4
18
96
0
77
44
0
0
55
0.99
16069--16128
17
3.5
17
97
0
111
40
15
5
40
1.68
16061--16128
17
4.0
17
94
0
109
38
16
5
39
1.73
22882--23290
45
9.0
45
84
3
471
26
22
12
39
1.89
22882--23384
90
5.6
90
81
5
498
26
22
11
40
1.87
22882--23278
182
2.2
179
86
3
537
26
21
12
38
1.89
23220--23381
45
3.6
44
85
8
179
24
21
7
46
1.77
22882--23336
227
2.0
224
83
6
562
26
22
11
39
1.88
23378--23703
68
4.8
68
80
3
334
30
25
15
28
1.95
23908--24183
57
4.8
57
90
1
419
40
18
6
34
1.76
28184--28857
45
15.0
45
86
2
854
25
24
11
37
1.89
28785--28886
45
2.3
44
87
3
132
27
24
4
43
1.75
28900--29216
68
4.7
67
84
3
384
29
23
16
30
1.96
28906--29216
135
2.3
135
87
1
433
29
24
16
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29382--29696
57
5.5
57
88
1
427
38
16
8
35
1.80
33071--33125
22
2.5
22
88
2
76
30
14
34
20
1.92
54132--54157
12
2.2
12
100
0
52
92
0
7
0
0.39
59253--59287
12
2.8
12
91
4
52
68
2
5
22
1.24

Tables:   1

The End!