genome.fa.s7476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007476.1 Hibiscus syriacus cultivar Beakdansim tig00020562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59468

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1541--1593	21	2.5	21	81	6	63	20	24	18	35	1.95
1583--1674	20	4.7	20	84	8	125	39	19	22	18	1.93
1583--1674	41	2.3	39	87	5	123	39	19	22	18	1.93
2209--2288	32	2.4	32	85	4	97	43	23	21	11	1.84
2301--2354	14	3.5	14	73	22	54	9	22	22	46	1.80
2296--2403	33	3.1	33	80	10	117	11	24	19	45	1.82
2340--2403	20	3.1	21	82	8	78	10	25	17	46	1.80
4092--4321	90	2.6	88	87	10	326	20	11	18	49	1.78
4410--4509	19	5.2	19	91	2	155	49	22	21	8	1.75
4534--4613	33	2.4	33	89	0	124	10	20	22	47	1.79
4555--4613	19	3.4	18	68	22	54	11	20	20	47	1.81
5068--5155	42	2.1	42	83	6	108	23	35	19	21	1.96
5093--5155	21	3.0	21	68	9	56	22	36	19	22	1.95
6499--6534	14	2.6	14	95	0	63	33	0	22	44	1.53
6640--6712	33	2.2	33	90	0	110	47	21	19	10	1.79
6640--6707	19	3.8	19	74	20	65	48	20	19	11	1.80
6704--6743	18	2.2	18	90	0	62	50	22	12	15	1.77
6743--6860	19	6.7	19	64	19	67	12	21	20	45	1.84
6747--6840	33	2.8	33	93	0	161	12	20	19	47	1.81
6813--6906	20	4.7	20	72	13	68	21	20	23	35	1.96
9372--9425	24	2.2	24	93	0	90	40	20	18	20	1.91
9372--9439	24	2.8	24	84	0	64	38	20	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10286--10654	20	18.3	21	80	7	313	33	18	21	26	1.96
10297--10653	41	8.8	41	82	7	324	34	18	21	25	1.96
10286--10492	81	2.5	81	90	4	310	38	16	21	23	1.93
10608--10653	21	2.2	21	88	7	67	39	17	26	17	1.91
12040--12080	20	2.0	20	86	9	57	9	4	36	48	1.58
13298--13387	43	2.1	43	81	4	101	28	12	5	53	1.60
13397--13670	94	2.9	95	83	9	337	25	19	6	48	1.74
13589--13817	88	2.6	86	84	8	273	27	17	7	48	1.74
13580--13841	44	5.9	43	75	11	224	26	17	8	47	1.75
13589--13846	88	2.9	85	80	10	270	26	17	8	47	1.75
15115--15149	17	2.1	17	89	10	54	28	0	17	54	1.43
15115--15163	17	2.9	16	82	11	53	32	0	16	51	1.45
18493--18533	13	3.0	13	86	13	64	24	24	0	51	1.49
18493--18532	15	2.8	15	92	7	66	25	25	0	50	1.50
34948--34982	16	2.2	15	90	10	52	51	0	0	48	1.00
38017--38074	21	2.7	23	77	20	63	65	3	3	27	1.25
41135--41180	12	3.9	12	77	11	51	0	8	52	39	1.33
41672--41771	42	2.4	42	81	5	114	31	19	20	30	1.96
41635--42197	276	2.0	275	87	2	808	34	19	16	29	1.94
42084--42225	57	2.6	53	77	11	146	39	16	12	30	1.86
43401--43457	1	57.0	1	82	0	69	3	3	1	91	0.56
43372--43457	10	8.1	10	81	14	84	2	11	1	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43394--43457	31	2.1	31	87	0	92	3	6	1	89	0.65
43372--43447	8	9.4	8	79	13	68	1	13	0	85	0.66
43394--43461	29	2.3	29	87	0	91	4	7	1	86	0.74
43401--43457	15	3.5	16	88	7	80	3	3	1	91	0.56
43412--43471	29	2.1	29	83	0	75	6	10	1	81	0.93
46474--46721	44	5.6	44	89	0	345	20	25	22	31	1.98
46474--46762	88	3.3	88	84	1	346	21	26	21	31	1.98
46474--46762	132	2.2	132	81	5	334	21	26	21	31	1.98
50457--50499	21	2.2	19	83	8	50	18	13	6	60	1.55
51957--52001	21	2.1	21	84	8	56	15	20	6	57	1.60
53385--53476	17	5.4	16	74	24	73	76	0	22	1	0.86
53391--53487	9	11.6	8	77	14	90	76	0	22	1	0.85
53422--53484	7	8.7	7	75	18	58	80	0	19	0	0.70
53391--53488	16	5.9	16	76	20	87	76	0	22	1	0.85
54110--54176	28	2.4	28	92	0	107	41	29	2	25	1.70
54112--54186	28	2.7	27	85	8	96	41	32	2	24	1.69
55472--55594	55	2.3	54	82	2	140	37	8	13	40	1.75
55513--55618	53	2.0	55	84	3	144	34	10	13	41	1.78
55503--55624	53	2.3	55	80	5	142	32	9	11	45	1.73
55846--55942	41	2.3	42	96	1	178	24	21	18	35	1.96
55879--55941	20	3.1	20	69	13	65	25	20	19	34	1.96
55950--56312	141	2.6	140	84	2	485	25	27	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56195--56407	83	2.5	84	86	3	295	25	26	15	31	1.96
57524--57847	136	2.4	136	77	8	341	36	16	19	26	1.94

Tables:   1

The End!