Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007477.1 Hibiscus syriacus cultivar Beakdansim tig00020573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 79736
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Found at i:3181 original size:30 final size:30
Alignment explanation
Indices: 3145--3228 Score: 127
Period size: 30 Copynumber: 2.8 Consensus size: 30
3135 GTAAATACCA
*
3145 TTTTTCAACACCAACACCTACCACTC-CATT
1 TTTTTCAACACCAACACCCACCA-TCACATT
3175 TTTTTCAACACCAACACCCACCATCACATT
1 TTTTTCAACACCAACACCCACCATCACATT
*
3205 TTTTTCAACACCAAC-CCCATCATC
1 TTTTTCAACACCAACACCCACCATC
3229 CCTTATTCCC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
29 10 0.20
30 41 0.80
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (30 bp):
TTTTTCAACACCAACACCCACCATCACATT
Found at i:6429 original size:13 final size:14
Alignment explanation
Indices: 6411--6464 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
6401 CAATTCCTTG
6411 TTGCA-TTTGCATC
1 TTGCATTTTGCATC
6424 TTGCATTTTGCA-C
1 TTGCATTTTGCATC
**
6437 TCCCATTTTTGCATC
1 TTGCA-TTTTGCATC
6452 TTTGCA-TTTGCAT
1 -TTGCATTTTGCAT
6465 GTACATCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 9 0.27
14 20 0.61
15 1 0.03
16 3 0.09
ACGTcount: A:0.15, C:0.24, G:0.13, T:0.48
Consensus pattern (14 bp):
TTGCATTTTGCATC
Found at i:6498 original size:29 final size:28
Alignment explanation
Indices: 6444--6498 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
6434 CACTCCCATT
* *
6444 TTTGCATCTTTGCATTTGCATGTACATC
1 TTTGCATCTTTGCATTAGCATATACATC
*
6472 TTTGCATCTTTTGCATTAGTATATACA
1 TTTGCATC-TTTGCATTAGCATATACA
6499 CATTGTTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (28 bp):
TTTGCATCTTTGCATTAGCATATACATC
Found at i:8759 original size:75 final size:76
Alignment explanation
Indices: 8672--8833 Score: 238
Period size: 76 Copynumber: 2.1 Consensus size: 76
8662 ATCTCATTGG
* *
8672 AGATTGTTTTTCTTAAAAC-AGACTTTATCTCACTTGAGACTG-TTTTATTCGAAAGAATACATT
1 AGATTGTTTTTCTTAAAACAAGA-TTTATCTCACTTGAGACAGTTTTTACTCGAAAGAATACATT
*
8735 TCATTTGACTCA
65 TCATTTCACTCA
* * * *
8747 AGATTATTTTTCTTAAAACAAGATTTGTCTCTCTTGAGACAGTTTTTACTCGAAATAATACATTT
1 AGATTGTTTTTCTTAAAACAAGATTTATCTCACTTGAGACAGTTTTTACTCGAAAGAATACATTT
8812 CATTTCACTCA
66 CATTTCACTCA
8823 AGATTGTTTTT
1 AGATTGTTTTT
8834 AAAGAATATT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
75 34 0.44
76 43 0.56
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (76 bp):
AGATTGTTTTTCTTAAAACAAGATTTATCTCACTTGAGACAGTTTTTACTCGAAAGAATACATTT
CATTTCACTCA
Found at i:8899 original size:39 final size:39
Alignment explanation
Indices: 8836--9226 Score: 539
Period size: 39 Copynumber: 10.0 Consensus size: 39
8826 TTGTTTTTAA
* * * *
8836 AGAATATTGTATCTCACTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
8875 AGAAGATTTTATCTTGCTTGAGATAGTTTCCCTTGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
8914 AGAAGATTTTATCTCGTTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
8953 AGAAGAGTTTGTCTCGTTTAAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
8992 AGAAGATTTTATCTCGCTTCAGATAGTTTCTCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
9031 AGAAGATTTTATCTCGCTTGAGATAGTTTCTCTCAAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
9070 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
9109 AGAAGATTTTATCTCGCTTAAGATAGTTTCCCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
9148 AGAAGATCTTGTCTCTCTTGAGACAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * *
9187 AGAAGATCTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
9226 A
1 A
9227 CCAATCTTTG
Statistics
Matches: 322, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 322 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:9014 original size:20 final size:20
Alignment explanation
Indices: 8991--9127 Score: 61
Period size: 19 Copynumber: 7.0 Consensus size: 20
8981 TCCCTCGAAA
8991 CAGAAGATTTTATCTCGCTT
1 CAGAAGATTTTATCTCGCTT
* ***
9011 CAGATAG--TTTCTCTCGAAA
1 CAGA-AGATTTTATCTCGCTT
9030 CAGAAGATTTTATCTCGCTT
1 CAGAAGATTTTATCTCGCTT
* * ****
9050 GAGATAG--TTTCTCTCAAAA
1 CAGA-AGATTTTATCTCGCTT
9069 CAGAAGATTTTATCTCGCTT
1 CAGAAGATTTTATCTCGCTT
* ** ***
9089 GAGATAG--TTTCCCTCGAAA
1 CAGA-AGATTTTATCTCGCTT
9108 CAGAAGATTTTATCTCGCTT
1 CAGAAGATTTTATCTCGCTT
9128 AAGATAGTTT
Statistics
Matches: 76, Mismatches: 32, Indels: 18
0.60 0.25 0.14
Matches are distributed among these distances:
18 6 0.08
19 32 0.42
20 32 0.42
21 6 0.08
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (20 bp):
CAGAAGATTTTATCTCGCTT
Found at i:9033 original size:19 final size:19
Alignment explanation
Indices: 8934--9033 Score: 60
Period size: 19 Copynumber: 5.2 Consensus size: 19
8924 ATCTCGTTTG
*
8934 AGATAGTTTCCCTCGAAAC
1 AGATAGTTTCTCTCGAAAC
* * **
8953 AGAAGAGTTTGTCTCGTTTA-
1 AG-ATAGTTTCTCTCG-AAAC
*
8973 AGATAGTTTCCCTCGAAAC
1 AGATAGTTTCTCTCGAAAC
* ***
8992 AGA-AGATTTTATCTCGCTTC
1 AGATAG--TTTCTCTCGAAAC
9012 AGATAGTTTCTCTCGAAAC
1 AGATAGTTTCTCTCGAAAC
9031 AGA
1 AGA
9034 AGATTTTATC
Statistics
Matches: 56, Mismatches: 19, Indels: 12
0.64 0.22 0.14
Matches are distributed among these distances:
18 3 0.05
19 27 0.48
20 23 0.41
21 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (19 bp):
AGATAGTTTCTCTCGAAAC
Found at i:9301 original size:37 final size:36
Alignment explanation
Indices: 9259--9330 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
9249 TTGAAGAAAA
*
9259 TTTTGTCT-TTCTTGAGACCA-TTTTTACTCAAAACAAG
1 TTTTGTCTCTT-TTGAGA-CAGTTTCT-CTCAAAACAAG
9296 TTTTGTCTCTTTTGAGACAGTTTCTCTCAAAACAA
1 TTTTGTCTCTTTTGAGACAGTTTCTCTCAAAACAA
9331 AAGTCCGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 12 0.38
37 18 0.56
38 2 0.06
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.43
Consensus pattern (36 bp):
TTTTGTCTCTTTTGAGACAGTTTCTCTCAAAACAAG
Found at i:9455 original size:36 final size:35
Alignment explanation
Indices: 9408--9528 Score: 188
Period size: 36 Copynumber: 3.4 Consensus size: 35
9398 CTTTGAAAAC
9408 GTTTCCCTTGAAACGGATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAAC-GATTTTGTCTCTCTTGAGACA
9444 GTTTCCCTTGAAACGAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACGA-TTTTGTCTCTCTTGAGACA
* * *
9480 ATTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACA
1 GTTTCCCTTGAAAC-GATTTTGTCTCTCTTGAGACA
9516 GTTTCCCTTGAAA
1 GTTTCCCTTGAAA
9529 GAAGAAATGT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
35 2 0.03
36 76 0.96
37 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (35 bp):
GTTTCCCTTGAAACGATTTTGTCTCTCTTGAGACA
Found at i:9589 original size:74 final size:75
Alignment explanation
Indices: 9471--9649 Score: 200
Period size: 74 Copynumber: 2.4 Consensus size: 75
9461 TTTTGTCTCT
* * * * * * * * *
9471 CTTGAGACAATTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACAGTTTCCCTTGAAAGAAGAAA
1 CTTGAGAGAGTTTCTCTTAAAACAAATTTCGTCTCGCTTAAGACAATTTCCCTTAAAACAAGAAA
*
9536 -TGTATCTCA
66 TTGTATCTAA
* * *
9545 CTTGAGATG-GTTTTTCTTAAAACCAATTTCGTCTCGCTTGAGACAATTTCCCTTAAAACAAGAA
1 CTTGAGA-GAGTTTCTCTTAAAACAAATTTCGTCTCGCTTAAGACAATTTCCCTTAAAACAAGAA
*
9609 ATTTTATCTAA
65 ATTGTATCTAA
*
9620 CTTGAGAGAGTTTCTCTTAAAACAAGTTTC
1 CTTGAGAGAGTTTCTCTTAAAACAAATTTC
9650 TTATTCAATT
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
74 53 0.62
75 32 0.38
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (75 bp):
CTTGAGAGAGTTTCTCTTAAAACAAATTTCGTCTCGCTTAAGACAATTTCCCTTAAAACAAGAAA
TTGTATCTAA
Found at i:9600 original size:36 final size:36
Alignment explanation
Indices: 9408--9644 Score: 179
Period size: 36 Copynumber: 6.4 Consensus size: 36
9398 CTTTGAAAAC
* **
9408 GTTTCCCTTGAAACGGATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* * *
9444 GTTTCCCTTGAAACGAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* * *
9480 ATTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* * * * **
9516 GTTTCCCTTGAAAGA-AGAAATGTATCTCACTTGAGATG
1 GTTTCCCTT-AAA-ACA-AATTTTGTCTCTCTTGAGACA
** * * *
9554 GTTTTTCTTAAAACCAATTTCGTCTCGCTTGAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* * ** *
9590 ATTTCCCTTAAAACAAGAAATTTTATCTAACTTGAGAGA
1 GTTTCCCTTAAAAC---AAATTTTGTCTCTCTTGAGACA
*
9629 GTTTCTCTTAAAACAA
1 GTTTCCCTTAAAACAA
9645 GTTTCTTATT
Statistics
Matches: 158, Mismatches: 36, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
36 102 0.65
37 6 0.04
38 22 0.14
39 28 0.18
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (36 bp):
GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
Found at i:10100 original size:44 final size:44
Alignment explanation
Indices: 10052--11428 Score: 352
Period size: 44 Copynumber: 31.2 Consensus size: 44
10042 AATCCATCGT
* * *
10052 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTTGATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * ** * * *
10096 AGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * *
10140 AGAAGGAGGTGGAT---CGACATTTTTATTTCGCTCAAATCCATCGC
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-TTT-GCTCGATTCCATCAC
* * *
10184 AGAAGGAGTTGGATCAGCGTCAATTTTTTTGCTCGATTCTATCAT
1 AGAAGGAGGTGGATCAGCGTCAA-TTTTTTGCTCGATTCCATCAC
* * * ** * * * *
10229 AGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAT
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * **
10273 AGAAAGAGGTGGATC-G-AT-ATTTTTATTTCGCTCAAATCCATCGT
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-TTT-GCTCGATTCCATCAC
* * *
10317 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCAATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * ** ** * * *
10361 AGAAGGAGGTAGATCAGCATTGACATCTCGTTCGATTCCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * * **
10405 AGAATGAGGT-GA--ATCGACATTTTTATTTCGCTCAAATCCATCGT
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-TTT-GCTCGATTCCATCAC
* *
10449 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * ** * * *
10493 AGAAGGAGGTAGTTCAGCATCGACATCTCGTTCGATTCCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * *
10537 AGAAGGAGGT-GA--ATCGACATTTTTATTTCGCTCAAATCCATTAC
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-TTT-GCTCGATTCCATCAC
* * * *
10581 AGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGTTTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * ** * * * *
10625 ---AGGAGGTAGATCAACATCGACATCTCGTTCGATTTCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
** * * * **
10666 AGAACAAGGTGGATC-G-AT-AATTTTATCTTCGCTCAAATCCATTGC
1 AGAAGGAGGTGGATCAGCGTCAA-TTT-T-TT-GCTCGATTCCATCAC
* * * *
10711 AGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCAT
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * ** * * * *
10755 AGAATGAGGTAGATCAACATCGACATCTTGTTTGATTTCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * * *
10799 AGAATGAGGTGGAT---CGACATTTTTATCTTCGCTCAAATCTATCGC
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-T-TT-GCTCGATTCCATCAC
* * * *
10844 AGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGTTTCTATCA-
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * ** * * * *
10887 AGAAGGAGGTAGATCATCATCGACATCTCGTTCGATTTCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * *
10931 AGAAGGAGGTGGAT---TGACATTTTTATCTTCGCTCAAATCCATCGC
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-T-TT-GCTCGATTCCATCAC
* * * *
10976 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * ** * * * *
11020 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * * *
11064 ATAAGGAGGTGGAT---CGACATTTTTATCTTCGCTCAAATCCATCGC
1 AGAAGGAGGTGGATCAGCGTCA-ATTT-T-TT-GCTCGATTCCATCAC
* * * *
11109 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * * ** * * *
11153 AGAATGAGGTAGATC-GACATCGACATATCGTTCGATTTCCATCAC
1 AGAAGGAGGTGGATCAG-CGTCAATTTTTTGCTCGA-TTCCATCAC
* * *** * * **
11198 AGAAGGAGGTGGATAAAC-TTTTTTATTTTCGCTCAAATCCATCGT
1 AGAAGGAGGTGGATCAGCGTCAATT-TTTT-GCTCGATTCCATCAC
* * * * * * *
11243 AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCAATTCTATCGC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
* * * ** ** * * *
11287 AGAATGAGGTAGATCAGCATTGACATATCGTTCGATTTCCATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGA-TTCCATCAC
* * ** * * *
11332 AGAATGAGGTGGATC-GACAT-TTTTATTTTCGCTCAAATCCATCGC
1 AGAAGGAGGTGGATCAG-CGTCAATT-TTTT-GCTCGATTCCATCAC
* * * *
11377 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCAC
1 AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
11421 AGAAGGAG
1 AGAAGGAG
11429 AAGGAATTGG
Statistics
Matches: 909, Mismatches: 355, Indels: 138
0.65 0.25 0.10
Matches are distributed among these distances:
41 42 0.05
42 12 0.01
43 40 0.04
44 512 0.56
45 234 0.26
46 29 0.03
47 27 0.03
48 13 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (44 bp):
AGAAGGAGGTGGATCAGCGTCAATTTTTTGCTCGATTCCATCAC
Found at i:10181 original size:132 final size:132
Alignment explanation
Indices: 9939--11428 Score: 2241
Period size: 132 Copynumber: 11.2 Consensus size: 132
9929 AAGAGATACA
* * * * *
9939 TCAACTTTTTACTCGATTCTATCACAGAAAGAGATAGATCAACATCGACGTCTCGTTCGATTCTA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
* *
10004 TCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAG
66 TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
10069 CG
131 CG
* *
10071 TCAATTTTTTGCTTGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
10136 TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
66 TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
10201 CG
131 CG
* * *
10203 TCAATTTTTTTGCTCGATTCTATCATAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCC
1 TCAA-CTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCC
* * * *
10268 ATCATAGAAAGAGGTGGATCGATATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCA
65 ATCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
10333 GCG
130 GCG
* * * *
10336 TCAATTTTTTGCTCAATTCTATCACAGAAGGAGGTAGATCAGCATTGACATCTCGTTCGATTCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
* * *
10401 TCACAGAATGAGGTGAATCGACATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAG
66 TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
10466 CG
131 CG
* * *
10468 TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAGTTCAGCATCGACATCTCGTTCGATTCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
* **
10533 TCACAGAAGGAGGTGAATCGACATTTTTATTTCGCTCAAATCCATTACAGAAGGAGTTGGATCAG
66 TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
10598 CG
131 CG
* *
10600 TCAACTTTTTGCTCGTTTCTATCAC---AGGAGGTAGATCAACATCGACATCTCGTTCGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
** * * *
10662 TCACAGAACAAGGTGGATCGATAATTTTATCTTCGCTCAAATCCATTGCAGAAGGAGTTGGATCA
66 TCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
10727 GCG
130 GCG
* * * * *
10730 TCAACTTTTTGCTCGATTCTATCATAGAATGAGGTAGATCAACATCGACATCTTGTTTGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
* *
10795 TCACAGAATGAGGTGGATCGACATTTTTATCTTCGCTCAAATCTATCGCAGAAGGAGTTGGATCA
66 TCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
10860 GCG
130 GCG
* * *
10863 TCAACTTTTTGCTCGTTTCTATCA-AGAAGGAGGTAGATCATCATCGACATCTCGTTCGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
*
10927 TCACAGAAGGAGGTGGATTGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
66 TCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
10992 GCG
130 GCG
* * * *
10995 TCAACTTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
*
11060 TCACATAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
66 TCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
11125 GCG
130 GCG
* * * *
11128 TCAACTTTTAGCTCGATTCTATCACAGAATGAGGTAGATCGACATCGACATATCGTTCGATTTCC
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGA-TTCC
** * *
11193 ATCACAGAAGGAGGTGGATAAACTTTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATC
65 ATCACAGAAGGAGGTGGATCGACATTTTTA-TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
*
11258 AACG
129 AGCG
* * * * * * *
11262 TCAACTTTTAGCTCAATTCTATCGCAGAATGAGGTAGATCAGCATTGACATATCGTTCGATTTCC
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGA-TTCC
*
11327 ATCACAGAATGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
65 ATCACAGAAGGAGGTGGATCGACATTTTTA-TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
11392 AGCG
129 AGCG
*
11396 TCAACTTTTAGCTCGATTCTATCACAGAAGGAG
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAG
11429 AAGGAATTGG
Statistics
Matches: 1260, Mismatches: 90, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
129 59 0.05
130 59 0.05
132 519 0.41
133 405 0.32
134 217 0.17
135 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (132 bp):
TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTCCA
TCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
CG
Found at i:10423 original size:265 final size:264
Alignment explanation
Indices: 9939--11428 Score: 2268
Period size: 265 Copynumber: 5.6 Consensus size: 264
9929 AAGAGATACA
* * * * * *
9939 TCAACTTTTTACTCGATTCTATCACAGAAAGAGATAGATCAACATCGACGTCTCGTTCGATTCTA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCA
*
10004 TCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAG
66 TCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
* *
10069 CGTCAATTTTTTGCTTGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTC
131 CGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTC
10134 CATCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
196 CATCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
10199 AGCG
261 AGCG
* *
10203 TCAATTTTTTTGCTCGATTCTATCATAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCC
1 TCAA-CTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCC
* * * *
10268 ATCATAGAAAGAGGTGGATCGATATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCA
65 ATCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
* * * *
10333 GCGTCAATTTTTTGCTCAATTCTATCACAGAAGGAGGTAGATCAGCATTGACATCTCGTTCGATT
130 GCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATT
* * *
10398 CCATCACAGAATGAGGTGAATCGACATTTTTATTTCGCTCAAATCCATCGTAGAAGGAGTTGGAT
195 CCATCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGAT
10463 CAGCG
260 CAGCG
* *
10468 TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAGTTCAGCATCGACATCTCGTTCGATTCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCA
* * **
10533 TCACAGAAGGAGGTGAATCGACATTTTTATTTCGCTCAAATCCATTACAGAAGGAGTTGGATCAG
66 TCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
* *
10598 CGTCAACTTTTTGCTCGTTTCTATCAC---AGGAGGTAGATCAACATCGACATCTCGTTCGATTT
131 CGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTC
** * * *
10660 CATCACAGAACAAGGTGGATCGATAATTTTATCTTCGCTCAAATCCATTGCAGAAGGAGTTGGAT
196 CATCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGAT
10725 CAGCG
260 CAGCG
* * * * * *
10730 TCAACTTTTTGCTCGATTCTATCATAGAATGAGGTAGATCAACATCGACATCTTGTTTGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCA
*
10795 TCACAGAATGAGGTGGATCGACATTTTTATCTTCGCTCAAATCTATCGCAGAAGGAGTTGGATCA
66 TCACAGAATGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
* *
10860 GCGTCAACTTTTTGCTCGTTTCTATCA-AGAAGGAGGTAGATCATCATCGACATCTCGTTCGATT
130 GCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATT
* *
10924 TCATCACAGAAGGAGGTGGATTGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGA
195 CCATCACAGAAGGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGA
10989 TCAGCG
259 TCAGCG
* * *
10995 TCAACTTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCA
* *
11060 TCACATAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
66 TCACAGAATGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
* * * *
11125 GCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGGTAGATCGACATCGACATATCGTTCGATT
130 GCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGA-T
** * *
11190 TCCATCACAGAAGGAGGTGGATAAACTTTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGG
194 TCCATCACAGAAGGAGGTGGATCGACATTTTTA-TTTCGCTCAAATCCATCGCAGAAGGAGTTGG
*
11255 ATCAACG
258 ATCAGCG
* * * * * *
11262 TCAACTTTTAGCTCAATTCTATCGCAGAATGAGGTAGATCAGCATTGACATATCGTTCGATTTCC
1 TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGA-TTCC
11327 ATCACAGAATGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
65 ATCACAGAATGAGGTGGATCGACATTTTTA-TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
*
11392 AGCGTCAACTTTTAGCTCGATTCTATCACAGAAGGAG
129 AGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAG
11429 AAGGAATTGG
Statistics
Matches: 1125, Mismatches: 90, Indels: 18
0.91 0.07 0.01
Matches are distributed among these distances:
261 59 0.05
262 120 0.11
263 58 0.05
264 145 0.13
265 489 0.43
266 31 0.03
267 121 0.11
268 101 0.09
269 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (264 bp):
TCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCA
TCACAGAATGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAG
CGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAACATCGACATCTCGTTCGATTC
CATCACAGAAGGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
AGCG
Found at i:11834 original size:30 final size:29
Alignment explanation
Indices: 11770--11876 Score: 171
Period size: 29 Copynumber: 3.7 Consensus size: 29
11760 GTAAACACCA
*
11770 TTTTTCAACACCAACACCTACCACCCCAT
1 TTTTTCAACACCAACACCCACCACCCCAT
11799 TTTTTCAACACCAACACCCACCACCCCATT
1 TTTTTCAACACCAACACCCACCACCCCA-T
* *
11829 TTTTTCAACACCAACACCCACCATCACAT
1 TTTTTCAACACCAACACCCACCACCCCAT
11858 TTTTTCAACACCAAC-CCCA
1 TTTTTCAACACCAACACCCA
11877 TCATCCCTTG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.05
29 43 0.58
30 27 0.36
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (29 bp):
TTTTTCAACACCAACACCCACCACCCCAT
Found at i:13675 original size:18 final size:18
Alignment explanation
Indices: 13650--13699 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
13640 CATAAGTCAG
13650 TATTTTATTAAAATAAAA
1 TATTTTATTAAAATAAAA
*
13668 TGTTTTATTAAAATAAAA
1 TATTTTATTAAAATAAAA
13686 TATTTTATTAAAAT
1 TATTTTATTAAAAT
13700 CATCCGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
TATTTTATTAAAATAAAA
Found at i:14154 original size:2 final size:2
Alignment explanation
Indices: 14147--14177 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14137 TCATAAATCT
14147 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14178 TTAATAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14467 original size:33 final size:33
Alignment explanation
Indices: 14403--14467 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
14393 AATTTAGAAA
* **
14403 TTAAAATAATGAAAACATATTTATATCTAATTT
1 TTAAAATAATAAAAACATATTTATAAATAATTT
*
14436 TTAAAATAA-AAAAATATATTTATTAAATAATT
1 TTAAAATAATAAAAACATATTTA-TAAATAATT
14468 AAATTAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (33 bp):
TTAAAATAATAAAAACATATTTATAAATAATTT
Found at i:15114 original size:23 final size:23
Alignment explanation
Indices: 15071--15114 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
15061 TATTCAACAC
*
15071 ATTAAATATAAAAATACTAAAAA
1 ATTAAATATAAAAAGACTAAAAA
*
15094 ATTAAATCATTAAAAGA-TAAA
1 ATTAAAT-ATAAAAAGACTAAA
15115 TTTAAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
ATTAAATATAAAAAGACTAAAAA
Found at i:15310 original size:27 final size:28
Alignment explanation
Indices: 15280--15332 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
15270 TCTATTTTTA
15280 TTTTCAATTTTT-GTTTTTAGAAAATAT
1 TTTTCAATTTTTAGTTTTTAGAAAATAT
* *
15307 TTTTCATTTTTTAGTTTTTTGAAAAT
1 TTTTCAATTTTTAGTTTTTAGAAAAT
15333 TAGAAAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.26, C:0.04, G:0.08, T:0.62
Consensus pattern (28 bp):
TTTTCAATTTTTAGTTTTTAGAAAATAT
Found at i:15956 original size:23 final size:21
Alignment explanation
Indices: 15916--15958 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
15906 GAGGACTTAT
*
15916 TTATTTAAAAAAATTACAAAG
1 TTATTTAAAAAAAATACAAAG
15937 TTATTTAAATTAAAAATACAAA
1 TTATTTAAA--AAAAATACAAA
15959 ATATAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
23 10 0.53
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (21 bp):
TTATTTAAAAAAAATACAAAG
Found at i:31035 original size:137 final size:139
Alignment explanation
Indices: 30878--31236 Score: 519
Period size: 139 Copynumber: 2.6 Consensus size: 139
30868 AATCTAGCAA
30878 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* * * * * *
30943 GAACTCTTTATGGAAATGTTGATCCTCAAAAGAGG-TGTT-GTTGATTCAACTTCATATGTGATG
66 GAACTCTTTCTGGAAATGTTGATCCTCAAAAGAGGTTCTTCGTTCATTCAACTCCATAGGCGATG
* *
31006 AATTAAGGC-
131 AATCAA-ACT
*
31015 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAATTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* * ** * *
31080 GAACT-TCCTCTGAAAATGTTGATCCTCAAGTGAGGTTCTTCTTTCATTCAGCTCCATAGGCGAT
66 GAACTCT-TTCTGGAAATGTTGATCCTCAAAAGAGGTTCTTCGTTCATTCAACTCCATAGGCGAT
31144 GAATCAAACT
130 GAATCAAACT
* *
31154 AAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
31219 GAACTCTTTCTGGAAATG
66 GAACTCTTTCTGGAAATG
31237 GCTCTACTGC
Statistics
Matches: 197, Mismatches: 20, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
136 1 0.01
137 92 0.47
138 4 0.02
139 99 0.50
140 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (139 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
GAACTCTTTCTGGAAATGTTGATCCTCAAAAGAGGTTCTTCGTTCATTCAACTCCATAGGCGATG
AATCAAACT
Found at i:31202 original size:139 final size:138
Alignment explanation
Indices: 30878--31223 Score: 491
Period size: 137 Copynumber: 2.5 Consensus size: 138
30868 AATCTAGCAA
30878 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* * * * * * *
30943 GAAC-TCTTTATGGAAATGTTGATCCTCAAAAGAGGTGTTGTTGATTCAACTTCATATGTGATGA
66 GAACTTCTCTATGAAAATGTTGATCCTCAAAAGAGGTCTTGTTCATTCAACTCCATAGGCGATGA
* *
31007 ATTAAGGC
131 ATCAAGAC
*
31015 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAATTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* ** * *
31080 GAACTTC-CTCTGAAAATGTTGATCCTCAAGTGAGGTTCTTCTTTCATTCAGCTCCATAGGCGAT
66 GAACTTCTCTATGAAAATGTTGATCCTCAAAAGAGG-TCTT-GTTCATTCAACTCCATAGGCGAT
31144 GAATCAA-AC
129 GAATCAAGAC
* *
31153 TAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTA
1 -AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTA
31218 TGAACT
65 TGAACT
31224 CTTTCTGGAA
Statistics
Matches: 187, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
137 91 0.49
138 6 0.03
139 90 0.48
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (138 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
GAACTTCTCTATGAAAATGTTGATCCTCAAAAGAGGTCTTGTTCATTCAACTCCATAGGCGATGA
ATCAAGAC
Found at i:31411 original size:113 final size:113
Alignment explanation
Indices: 31274--31683 Score: 671
Period size: 112 Copynumber: 3.6 Consensus size: 113
31264 TGGAGTCAAA
* *
31274 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTTA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
31339 TTATGAACTCTACCTGGCAATGCTGATCCATCGAATGATGAATTCGAG
66 TTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAG
*
31387 CAAAAAGTTGAATAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
31452 TTATGAACTCT-TCTGGCAATGTTGATCCATCGAGTGATGAATTCAAG
66 TTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAG
* * * *
31499 CAAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTC-TCCTTCTTCATATGAGTTCTTCTTA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
31563 TTATGAACTCGACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAG
66 TTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAG
* * *
31611 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCTTTCTTCAGATGAGTTCTTCTCA
1 CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
31676 TTATGAAC
66 TTATGAAC
31684 CCTTCTGGAA
Statistics
Matches: 274, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
111 33 0.12
112 138 0.50
113 103 0.38
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (113 bp):
CAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAG
Found at i:31551 original size:23 final size:22
Alignment explanation
Indices: 31517--31560 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
31507 TGAACAAGTT
31517 CTTCTTATTATGAACTTCTTCTC
1 CTTCTTATTATG-ACTTCTTCTC
*
31540 CTTCTTCA-TATGAGTTCTTCT
1 CTTCTT-ATTATGACTTCTTCT
31561 TATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 10 0.53
24 1 0.05
ACGTcount: A:0.16, C:0.25, G:0.07, T:0.52
Consensus pattern (22 bp):
CTTCTTATTATGACTTCTTCTC
Found at i:31671 original size:224 final size:230
Alignment explanation
Indices: 31160--31698 Score: 770
Period size: 224 Copynumber: 2.3 Consensus size: 230
31150 AACTAAGGTC
* *
31160 GAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
** * *
31225 TTTCTGGAAATGGCTCTACTGCTCTATCTCTTTCTGAAATGGAGTCAAACAAAAGGTTGAACAAG
66 -TTCTGGAAAT-G-T-TACTGCTCTA-CTCTGACTG-AATGAAGTCAAACAAAAAGTTGAACAAG
*
31290 TTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCTACCTG
125 TTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGACCTG
31355 GCAATGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTT
190 GCAATGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTT
* *
31396 GAATAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * * *
31461 CTTCTGGCAATGTTGA-T-C-C-A-TC-GAGTG-ATGAATTCAAGCAAAAAGTTGAACAAGTTCT
65 CTTCTGGAAATGTT-ACTGCTCTACTCTGACTGAATGAAGTCAAACAAAAAGTTGAACAAGTTCT
* * *
31519 TCTTATTATGAACTTCTTC-TCCTTCTTCATATGAGTTCTTCTTATTATGAACTCGACCTGGCAA
129 TCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGACCTGGCAA
*
31583 TGCTGATCCATCGAGTGATGAATTCGAGCAAAAAGTT
194 TGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTT
* *
31620 GAACAAGTTCTTCTCATTATGAACTTCTTTTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTC-TTCTTCAGATGAGTTCTTCTCATTATGAACT
31685 CTTCTGGAAATGTT
65 CTTCTGGAAATGTT
31699 TTAAGAAAAA
Statistics
Matches: 278, Mismatches: 22, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
223 1 0.00
224 151 0.54
225 44 0.16
227 2 0.01
228 2 0.01
230 1 0.00
231 1 0.00
232 1 0.00
233 2 0.01
234 2 0.01
235 1 0.00
236 38 0.14
237 32 0.12
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (230 bp):
GAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
TTCTGGAAATGTTACTGCTCTACTCTGACTGAATGAAGTCAAACAAAAAGTTGAACAAGTTCTTC
TCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGACCTGGCAATG
CTGATCCATCGAATGATGAATTCGAGCAAAAAGTT
Found at i:32530 original size:22 final size:22
Alignment explanation
Indices: 32496--32616 Score: 188
Period size: 22 Copynumber: 5.5 Consensus size: 22
32486 GATAAAGCTT
* *
32496 TCATATTTGAAAAGATAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
32518 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
32540 TCATCTGTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
32562 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
32584 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
32606 TCATCTTTGAA
1 TCATCTTTGAA
32617 GAATGTAGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 89 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:34044 original size:76 final size:76
Alignment explanation
Indices: 33914--34090 Score: 221
Period size: 76 Copynumber: 2.3 Consensus size: 76
33904 ATGATGATAT
* * * * * *
33914 GGGCCTTCAGCATGCCCCAACA-ATTGCTGATACGAACGTTAAAAATACATCAACATTCTTCATT
1 GGGCTTTCAGCATGCCCCAACATTTTACTGATACAAACATTAAAAATACATCAACATTCCTCATT
33978 CTGATTAAAAG
66 CTGATTAAAAG
* * **
33989 GGGCTTTCAGCATGCCCCAACATTTTACTGATATAAACATTCAGGATACATCAACATTCCTCATT
1 GGGCTTTCAGCATGCCCCAACATTTTACTGATACAAACATTAAAAATACATCAACATTCCTCATT
*
34054 CTGATTGAAAG
66 CTGATTAAAAG
* * *
34065 GGGTTTTAAGCATGCCCCAGCATTTT
1 GGGCTTTCAGCATGCCCCAACATTTT
34091 GTTGCTTGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
75 21 0.24
76 66 0.76
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (76 bp):
GGGCTTTCAGCATGCCCCAACATTTTACTGATACAAACATTAAAAATACATCAACATTCCTCATT
CTGATTAAAAG
Found at i:37153 original size:16 final size:18
Alignment explanation
Indices: 37132--37169 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
37122 CTTGATTCAA
37132 TTTTCC-TTTTT-CTTTT
1 TTTTCCTTTTTTCCTTTT
37148 TTTTCCTTTTTTCCTTTT
1 TTTTCCTTTTTTCCTTTT
37166 TTTT
1 TTTT
37170 ACCTAATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 5 0.25
18 9 0.45
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCCTTTTTTCCTTTT
Found at i:37472 original size:2 final size:2
Alignment explanation
Indices: 37465--37512 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
37455 ACAACAAAGG
37465 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37507 AT AT AT
1 AT AT AT
37513 TTAAAAGGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39122 original size:12 final size:12
Alignment explanation
Indices: 39107--39131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
39097 CAAACGTAAA
39107 AAATGCAAATGT
1 AAATGCAAATGT
39119 AAATGCAAATGT
1 AAATGCAAATGT
39131 A
1 A
39132 TATATGTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (12 bp):
AAATGCAAATGT
Found at i:39227 original size:7 final size:7
Alignment explanation
Indices: 39193--39234 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
39183 ATAAAAGTAT
39193 AAATGCA
1 AAATGCA
* *
39200 CAATGAA
1 AAATGCA
39207 AAATGCA
1 AAATGCA
39214 AAGATGCA
1 AA-ATGCA
39222 AAATGC-
1 AAATGCA
39228 AAATGCA
1 AAATGCA
39235 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:40754 original size:26 final size:28
Alignment explanation
Indices: 40725--40782 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
40715 CTTGAAAAAT
*
40725 AAAATAAT-A-TACATATAAATATTATG
1 AAAATAATAAGTACATATAAAAATTATG
* *
40751 AAAATAATAAGTATATATAAAAATTTTG
1 AAAATAATAAGTACATATAAAAATTATG
40779 AAAA
1 AAAA
40783 GAAAGAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 8 0.30
27 1 0.04
28 18 0.67
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (28 bp):
AAAATAATAAGTACATATAAAAATTATG
Found at i:41546 original size:137 final size:137
Alignment explanation
Indices: 41287--41549 Score: 318
Period size: 138 Copynumber: 1.9 Consensus size: 137
41277 TTATATTTAT
* * * *
41287 AAATAATTATTTATTTATTTAGAAATACCAGAAAAGGACTTCTAGGTGCCTTAAGACAGCTCTTT
1 AAATAATTATTTATTTATTTAAAAATACCAGAAAAGGACATCCAGGTGCCTTAAGACAGCTCCTT
* *** *
41352 TCTTCGATATTAAAAAATAAATAAATAATTAAAACATTTTTATAATAATTAATATATATATATAA
66 TCTTCAATATTAAAAAATAAATAAATAATTAAAACAAGATTAAAATAATTAATATATATATATAA
41417 TTTATAA
131 TTTATAA
* * * ** * *
41424 AAATAATATATTTATTTATTTAAAAATATCAGAGAATGGACATCCAGTTGTTTTACGACTG-TCC
1 AAATAAT-TATTTATTTATTTAAAAATACCAGA-AAAGGACATCCAGGTGCCTTAAGACAGCTCC
* *
41488 TTTCTT-AATATTGAAAAATAAATAAAT-ATTAAAACAAGATTAAAATAATTTATA-ATATATAT
64 TTTCTTCAATATTAAAAAATAAATAAATAATTAAAACAAGATTAAAATAATTAATATATATATAT
41550 TAGTAATAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
135 8 0.08
136 22 0.21
137 26 0.25
138 31 0.29
139 19 0.18
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (137 bp):
AAATAATTATTTATTTATTTAAAAATACCAGAAAAGGACATCCAGGTGCCTTAAGACAGCTCCTT
TCTTCAATATTAAAAAATAAATAAATAATTAAAACAAGATTAAAATAATTAATATATATATATAA
TTTATAA
Found at i:48614 original size:24 final size:24
Alignment explanation
Indices: 48581--48626 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
48571 TCATATAAAT
*
48581 TGCACTGAAGTGCCACGTAGAATA
1 TGCACCGAAGTGCCACGTAGAATA
*
48605 TGCACCGAAGTGCCATGTAGAA
1 TGCACCGAAGTGCCACGTAGAA
48627 ATGTCCCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (24 bp):
TGCACCGAAGTGCCACGTAGAATA
Found at i:48689 original size:47 final size:46
Alignment explanation
Indices: 48621--48716 Score: 122
Period size: 47 Copynumber: 2.1 Consensus size: 46
48611 GAAGTGCCAT
* * *
48621 GTAGAAATGTCCCGGAGGACCACATAGTATTATCCCGCAA-GACCAC
1 GTAGAAATGTCCCGAAGGACCACATAGAATTATCCC-AAAGGACCAC
* *
48667 GTAGAAATTGTCCTGAAGGACCACATAGAATTTTCCCAAAGGACCAC
1 GTAGAAA-TGTCCCGAAGGACCACATAGAATTATCCCAAAGGACCAC
48714 GTA
1 GTA
48717 AAACCCTCGA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
46 9 0.21
47 34 0.79
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (46 bp):
GTAGAAATGTCCCGAAGGACCACATAGAATTATCCCAAAGGACCAC
Found at i:48695 original size:24 final size:23
Alignment explanation
Indices: 48622--48713 Score: 87
Period size: 23 Copynumber: 4.0 Consensus size: 23
48612 AAGTGCCATG
* *
48622 TAGAAATGTCCCGGAGGACCACA
1 TAGAATTGTCCCGAAGGACCACA
* * *
48645 TAGTATTATCCCGCAA-GACCACG
1 TAGAATTGTCCCG-AAGGACCACA
*
48668 TAGAAATTGTCCTGAAGGACCACA
1 TAG-AATTGTCCCGAAGGACCACA
* *
48692 TAGAATTTTCCCAAAGGACCAC
1 TAGAATTGTCCCGAAGGACCAC
48714 GTAAAACCCT
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
23 37 0.69
24 17 0.31
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (23 bp):
TAGAATTGTCCCGAAGGACCACA
Found at i:50910 original size:2 final size:2
Alignment explanation
Indices: 50903--50935 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
50893 ACATTTTTAA
50903 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50936 TTGGTTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50943 original size:55 final size:54
Alignment explanation
Indices: 50862--50974 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 54
50852 TTTTATTCAG
50862 TATATAATATATATAATATATAGTTTTGAAAA-CATTTTT-AAATATATATATATA
1 TATATAATATATATAATATATAGTTTTGAAAATCATTTTTGAAA-ATATATA-ATA
* * **
50916 TATATATATATATATAATATTTGGTTTTGAAAATGTTTTTTGAAAATATATAATA
1 TATATA-ATATATATAATATATAGTTTTGAAAATCATTTTTGAAAATATATAATA
50971 TATA
1 TATA
50975 GTTTTGGAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
54 6 0.12
55 31 0.60
56 12 0.23
57 3 0.06
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (54 bp):
TATATAATATATATAATATATAGTTTTGAAAATCATTTTTGAAAATATATAATA
Found at i:51087 original size:37 final size:37
Alignment explanation
Indices: 50923--51293 Score: 400
Period size: 37 Copynumber: 9.9 Consensus size: 37
50913 ATATATATAT
* * **
50923 ATATATATAATATTTGGTTTTGAAAATGTTTTTTG-AA
1 ATATATATAATATATAGTTTTGAAAA-CATTTTTGAAA
*
50960 A-ATATATAATATATAGTTTTGGAAACAATTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAAC-ATTTTTGAAA
* *
50997 ATATATATAATATATAGTTTTG--AA-TTTTTTAAAAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTT--GAAA
*
51033 CTATATATATAATATATAGTTTTGAAAAACAATTTTCGAAA
1 --ATATATATAATATATAGTTTTG-AAAAC-ATTTTTGAAA
51074 ATATATATAATATATAGTTTTGAAAACATTTTTCGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTT-GAAA
51112 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
* *
51149 ATATATATAATATATAGTTGTGAAAACATTTTTAAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
** *
51186 ATATATATAATATACGGTTTTGAAAACATTTTCGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
** **
51223 A-AGTGGATAATATA-ACGTTTT-AAAATGTTTTTGGAAA
1 ATA-TATATAATATATA-GTTTTGAAAACATTTTT-GAAA
*
51260 ATATATATAATATATA-TTTTAGAAAACATGTTTG
1 ATATATATAATATATAGTTTT-GAAAACATTTTTG
51294 GGTTTTGAAA
Statistics
Matches: 285, Mismatches: 29, Indels: 40
0.81 0.08 0.11
Matches are distributed among these distances:
34 5 0.02
36 45 0.16
37 110 0.39
38 94 0.33
39 22 0.08
41 5 0.02
43 4 0.01
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTGAAAACATTTTTGAAA
Found at i:51356 original size:13 final size:14
Alignment explanation
Indices: 51338--51371 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
51328 GTATACATTT
51338 TTTATTTATTT-TA
1 TTTATTTATTTCTA
51351 TTTATTTATTTCTA
1 TTTATTTATTTCTA
51365 TTTATTT
1 TTTATTT
51372 TTATAGGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTATTTCTA
Found at i:52509 original size:25 final size:24
Alignment explanation
Indices: 52474--52530 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
52464 CTCCATCTTC
*
52474 TTTTTCTTCACTTTTCTTC-TTTT
1 TTTTTCTTCACTTTTCTTCGCTTT
52497 TTTTTCTCATCACTTTTCTTCGCTTT
1 TTTTTCT--TCACTTTTCTTCGCTTT
52523 TTTTTCTT
1 TTTTTCTT
52531 TTTCTCTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 7 0.23
24 1 0.03
25 12 0.40
26 10 0.33
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTTTCTTCACTTTTCTTCGCTTT
Found at i:54986 original size:42 final size:43
Alignment explanation
Indices: 54908--54994 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 43
54898 TTCTTTTTAA
**
54908 AATTTAAATTTAAATTTTTTCGTTTTTAATATTTTCC-TAATTT
1 AATTTAAATTTAAATTTTTTCACTTTTAATATTTTCCGT-ATTT
*
54951 AATTT-AATTTAATTTCTTTTCACTTTTAATA-TTTCCGTATTT
1 AATTTAAATTTAAATT-TTTTCACTTTTAATATTTTCCGTATTT
54993 AA
1 AA
54995 CTCTTTCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
42 20 0.51
43 19 0.49
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (43 bp):
AATTTAAATTTAAATTTTTTCACTTTTAATATTTTCCGTATTT
Found at i:56942 original size:9 final size:9
Alignment explanation
Indices: 56928--56963 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
56918 ATATGTACAC
56928 TTATCATTA
1 TTATCATTA
56937 TTATCATTA
1 TTATCATTA
* *
56946 TTAACATTC
1 TTATCATTA
56955 TTATCATTA
1 TTATCATTA
56964 ATTCATACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (9 bp):
TTATCATTA
Found at i:57219 original size:21 final size:21
Alignment explanation
Indices: 57193--57232 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
57183 ACATAGGATT
57193 TGTCCCGAAGGACCACATAGA
1 TGTCCCGAAGGACCACATAGA
57214 TGTCCCGAAGGACCACATA
1 TGTCCCGAAGGACCACATA
57233 TAACACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.30, G:0.23, T:0.15
Consensus pattern (21 bp):
TGTCCCGAAGGACCACATAGA
Found at i:59461 original size:19 final size:18
Alignment explanation
Indices: 59426--59478 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
59416 AAATTGGAGT
59426 ACAAAAAGAA-AAGAAAAA
1 ACAAAAAGAAGAA-AAAAA
59444 GACAAAAAGAAGAAAAAAA
1 -ACAAAAAGAAGAAAAAAA
*
59463 TCAGAAAAGAAGAAAA
1 ACA-AAAAGAAGAAAA
59479 GAGAAGAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 2 0.06
19 27 0.87
20 2 0.06
ACGTcount: A:0.77, C:0.06, G:0.15, T:0.02
Consensus pattern (18 bp):
ACAAAAAGAAGAAAAAAA
Found at i:65618 original size:20 final size:21
Alignment explanation
Indices: 65579--65618 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
65569 CATGTAGTAT
65579 CGATACTCACTCAACCAGAAC
1 CGATACTCACTCAACCAGAAC
65600 CGATACT-ACT-AATCCAGAA
1 CGATACTCACTCAA-CCAGAA
65619 TCTATTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 9 0.50
21 7 0.39
ACGTcount: A:0.40, C:0.33, G:0.10, T:0.17
Consensus pattern (21 bp):
CGATACTCACTCAACCAGAAC
Found at i:75291 original size:22 final size:22
Alignment explanation
Indices: 75266--75308 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75256 AATCGGGTTT
* *
75266 GAGATCCAATTTAGACAGGATC
1 GAGAGCCAATTTAGAAAGGATC
75288 GAGAGCCAATTTAGAAAGGAT
1 GAGAGCCAATTTAGAAAGGAT
75309 TCAGTTCAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.21
Consensus pattern (22 bp):
GAGAGCCAATTTAGAAAGGATC
Found at i:76018 original size:201 final size:200
Alignment explanation
Indices: 75586--76051 Score: 483
Period size: 201 Copynumber: 2.3 Consensus size: 200
75576 AGCGCAAAGC
* * * *
75586 AGAAGGGCTATCTGTCAATGAAAACTTTTGAGTTTGATTCCATTCAGCTCGAGGACGTATCAGCC
1 AGAAGGGCTATCTGTCAACGAAAACTTTCGAGTTCGATTCCATTCAGCTCGAGGACGTATCAACC
* * * * * **
75651 GCATGGTAGCAACAAGGAACTACTTTCCTATTGAAGTTTAAATGAGGTTTTTAGGTTAAGAAGAA
66 ACATGGTAGCAACAAAGAACTACTTACCGATTGAAGTTTAAATGAGGTTTTTAAGCCAAGAAGAA
* * * * *
75716 TACCTATGTTGGCTATGATTTAGCAACAAGGAACTATCTCCAAGCCAAATTTACAGCATAACTTA
131 GACCTAGGTTAGCTACGATTTAGCAACAAGGAACTATATCCAAGCCAAATTTACAGCATAACTTA
75781 AGTCA
196 AGTCA
** * **
75786 AGAAAAGCTATCTGTCAACAAAAACTTTCGAGTTCGATTCCATTCAGCTCGAGGGTGTATCAACC
1 AGAAGGGCTATCTGTCAACGAAAACTTTCGAGTTCGATTCCATTCAGCTCGAGGACGTATCAACC
* * *
75851 ACATGGTAGCAGCAAAGAACTACTTACCGGTTGAA-TTTATACCT-AGGTCTTTTAAGCCAAGAA
66 ACATGGTAGCAACAAAGAACTACTTACCGATTGAAGTTTA-A-ATGAGGT-TTTTAAGCCAAGAA
* * * * * * * * *
75914 GAAGACCTAGGTTAGTTGCGATTTAGTAAC-AGAGAGCTATATCCTAGCCTAGTTTACATCATAT
128 GAAGACCTAGGTTAGCTACGATTTAGCAACAAG-GAACTATATCCAAGCCAAATTTACAGCATAA
* *
75978 CTTAGGGT-G
192 CTTA-AGTCA
* * * * *
75987 GGAAGGGTTATCTGTCAACGAAAACTTTCGAGTTCAATTCCATTTAGCTCGAAGG-CATATCAAC
1 AGAAGGGCTATCTGTCAACGAAAACTTTCGAGTTCGATTCCATTCAGCTCG-AGGACGTATCAAC
76051 C
65 C
76052 GCTTAGTAGT
Statistics
Matches: 216, Mismatches: 44, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
199 4 0.02
200 92 0.43
201 115 0.53
202 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (200 bp):
AGAAGGGCTATCTGTCAACGAAAACTTTCGAGTTCGATTCCATTCAGCTCGAGGACGTATCAACC
ACATGGTAGCAACAAAGAACTACTTACCGATTGAAGTTTAAATGAGGTTTTTAAGCCAAGAAGAA
GACCTAGGTTAGCTACGATTTAGCAACAAGGAACTATATCCAAGCCAAATTTACAGCATAACTTA
AGTCA
Found at i:76543 original size:2 final size:2
Alignment explanation
Indices: 76536--76563 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76526 ATTTTTGAAA
76536 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76564 TTTTGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76562 original size:48 final size:47
Alignment explanation
Indices: 76493--76597 Score: 178
Period size: 48 Copynumber: 2.3 Consensus size: 47
76483 TTTTATTCAG
76493 TATATA-ATATATATAATATATAGTTTTGAAAACATTTTTGAAAATA
1 TATATATATATATATAATATATAGTTTTGAAAACATTTTTGAAAATA
*
76539 TATATATATATATATATATATATATTTTTGAAAACATTTTTGAAAATA
1 TATATATATATATATA-ATATATAGTTTTGAAAACATTTTTGAAAATA
76587 TATA-ATATATA
1 TATATATATATA
76598 GTTTTGAAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
46 6 0.11
47 16 0.29
48 34 0.61
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (47 bp):
TATATATATATATATAATATATAGTTTTGAAAACATTTTTGAAAATA
Found at i:76603 original size:35 final size:35
Alignment explanation
Indices: 76548--76991 Score: 497
Period size: 35 Copynumber: 12.8 Consensus size: 35
76538 ATATATATAT
*
76548 ATATATATATATATATTTTTGAAAACATTTTTGAAA
1 ATATATA-ATATATAGTTTTGAAAACATTTTTGAAA
76584 ATATATAATATATAGTTTTGAAAACATTTTTTGAAA
1 ATATATAATATATAGTTTTGAAAACA-TTTTTGAAA
76620 ATATAT-A-ATATAGTTTTGAAAACATTTTTTTG-AA
1 ATATATAATATATAGTTTTGAAAACA--TTTTTGAAA
76654 ATATATAATATATAGTTTTTG-AAACATTTTTGAAA
1 ATATATAATATATAG-TTTTGAAAACATTTTTGAAA
*
76689 ATATAT-ATATATAGTTTTG--AATATTTTTGAAA
1 ATATATAATATATAGTTTTGAAAACATTTTTGAAA
*
76721 A-AAATTATATAATATAGTTTTGAAAACATTTTTCGAAA
1 ATATA-TA-AT-ATATAGTTTTGAAAACATTTTT-GAAA
76759 TATATATAATATATAG-TTTGAAAACATTTTTG-AA
1 -ATATATAATATATAGTTTTGAAAACATTTTTGAAA
* *
76793 A-ATATAATATATAGTTGTGAAAACATTTTTCAAA
1 ATATATAATATATAGTTTTGAAAACATTTTTGAAA
*
76827 ATATAT-ATAATATGGTTTTGAAAACATTTTTGAAA
1 ATATATAAT-ATATAGTTTTGAAAACATTTTTGAAA
* **
76862 ATATATAATATATAGTTGTGAAAACATTTTCAAAA
1 ATATATAATATATAGTTTTGAAAACATTTTTGAAA
* *
76897 TATATATAATATATGGTTTTGAAAACATTTTCGAAA
1 -ATATATAATATATAGTTTTGAAAACATTTTTGAAA
* * * * * * *
76933 ATGTGT-ATATATAATTTT-ACATCGTTTTGGAAA
1 ATATATAATATATAGTTTTGAAAACATTTTTGAAA
76966 ATATAT-ATATATA-TTTTAGAAAACAT
1 ATATATAATATATAGTTTT-GAAAACAT
76992 GTTTAGGTTT
Statistics
Matches: 355, Mismatches: 30, Indels: 48
0.82 0.07 0.11
Matches are distributed among these distances:
31 2 0.01
32 31 0.09
33 42 0.12
34 62 0.17
35 106 0.30
36 82 0.23
37 19 0.05
38 6 0.02
39 3 0.01
40 2 0.01
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (35 bp):
ATATATAATATATAGTTTTGAAAACATTTTTGAAA
Found at i:76641 original size:69 final size:70
Alignment explanation
Indices: 76548--76934 Score: 492
Period size: 69 Copynumber: 5.5 Consensus size: 70
76538 ATATATATAT
*
76548 ATATATATATATATATTTTTGAAAACATTTTTGAAAATATATAATATATAGTTTTGAAAACATTT
1 ATATATATA-ATATAGTTTTGAAAACATTTTTGAAAATATATAATATATAGTTTTGAAAACATTT
*
76613 TTTGAA
65 TTCGAA
76619 A-ATATATAATATAGTTTTGAAAACATTTTTTTG-AAATATATAATATATAGTTTTTG-AAACAT
1 ATATATATAATATAGTTTTGAAAACA--TTTTTGAAAATATATAATATATAG-TTTTGAAAACAT
76681 TTTT-GAA
63 TTTTCGAA
* *
76688 A-ATATATATATATAGTTTTG--AATATTTTTGAAAA-AAATTATATAATATAGTTTTGAAAACA
1 ATATATATA-ATATAGTTTTGAAAACATTTTTGAAAATATA-TA-AT-ATATAGTTTTGAAAACA
76749 TTTTTCGAA
62 TTTTTCGAA
*
76758 ATATATATAATATA-TAGTTTGAAAACATTTTTG-AAA-ATATAATATATAGTTGTGAAAACATT
1 ATATATATAATATAGT--TTTGAAAACATTTTTGAAAATATATAATATATAGTTTTGAAAACATT
*
76820 TTTCAAA
64 TTTCGAA
* *
76827 ATATATATAATATGGTTTTGAAAACATTTTTGAAAATATATAATATATAGTTGTGAAAACA-TTT
1 ATATATATAATATAGTTTTGAAAACATTTTTGAAAATATATAATATATAGTTTTGAAAACATTTT
*
76891 TCAAA
66 TCGAA
*
76896 ATATATATAATATATGGTTTTGAAAACATTTTCGAAAAT
1 ATATATATAATATA--GTTTTGAAAACATTTTTGAAAAT
76935 GTGTATATAT
Statistics
Matches: 286, Mismatches: 10, Indels: 40
0.85 0.03 0.12
Matches are distributed among these distances:
66 8 0.03
67 5 0.02
68 26 0.09
69 105 0.37
70 81 0.28
71 47 0.16
72 5 0.02
73 9 0.03
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (70 bp):
ATATATATAATATAGTTTTGAAAACATTTTTGAAAATATATAATATATAGTTTTGAAAACATTTT
TCGAA
Found at i:77049 original size:4 final size:4
Alignment explanation
Indices: 77040--77083 Score: 63
Period size: 4 Copynumber: 10.8 Consensus size: 4
77030 AGTATACTTT
77040 TTTA TTTA TTTTA TTTA -TTA TTTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA -TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
77084 TTATTTTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 3 0.08
4 27 0.73
5 7 0.19
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:77065 original size:21 final size:22
Alignment explanation
Indices: 77038--77089 Score: 81
Period size: 21 Copynumber: 2.4 Consensus size: 22
77028 ATAGTATACT
77038 TTTTTATTTATTTTATTTA-TTA
1 TTTTTATTTA-TTTATTTATTTA
77060 -TTTTATTTATTTATTTATTTA
1 TTTTTATTTATTTATTTATTTA
77081 TTTTTATTT
1 TTTTTATTT
77090 TTCTAGGTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.29
21 12 0.43
22 8 0.29
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTATTTATTTATTTATTTA
Found at i:77066 original size:8 final size:9
Alignment explanation
Indices: 77039--77089 Score: 63
Period size: 8 Copynumber: 5.9 Consensus size: 9
77029 TAGTATACTT
77039 TTTTATTTA
1 TTTTATTTA
77048 TTTTATTTA
1 TTTTATTTA
*
77057 TTAT-TTTA
1 TTTTATTTA
77065 -TTTATTTA
1 TTTTATTTA
77073 -TTTATTTA
1 TTTTATTTA
77081 TTTTTATTT
1 -TTTTATTT
77090 TTCTAGGTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
7 2 0.05
8 16 0.43
9 12 0.32
10 7 0.19
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTATTTA
Found at i:77083 original size:12 final size:13
Alignment explanation
Indices: 77040--77083 Score: 74
Period size: 12 Copynumber: 3.5 Consensus size: 13
77030 AGTATACTTT
77040 TTTATTTATTTTA
1 TTTATTTATTTTA
77053 TTTA-TTATTTTA
1 TTTATTTATTTTA
77065 TTTATTTA-TTTA
1 TTTATTTATTTTA
77077 TTTATTT
1 TTTATTT
77084 TTATTTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 23 0.77
13 7 0.23
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:78194 original size:30 final size:29
Alignment explanation
Indices: 78140--78217 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
78130 TCATTTGTTT
*
78140 ATTTTCTTCTTTTTAGCA--TTTTTTA-C
1 ATTTTCTTCTTTTTAACATTTTTTTTATC
78166 ATTTTACTTCTTTTTAACATTTTCTTTTATC
1 ATTTT-CTTCTTTTTAACATTTT-TTTTATC
* * *
78197 TTTTTGTTCTTTTTAAAATTT
1 ATTTTCTTCTTTTTAACATTT
78218 AAATTTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.12
27 12 0.28
29 2 0.05
30 19 0.44
31 5 0.12
ACGTcount: A:0.18, C:0.13, G:0.03, T:0.67
Consensus pattern (29 bp):
ATTTTCTTCTTTTTAACATTTTTTTTATC
Found at i:78225 original size:30 final size:29
Alignment explanation
Indices: 78173--78230 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
78163 TACATTTTAC
* ***
78173 TTCTTTTTAACATTTTCTTTTATCTTTTTG
1 TTCTTTTTAAAATTTAAATTTAT-TTTTTG
78203 TTCTTTTTAAAATTTAAATTTATTTTTT
1 TTCTTTTTAAAATTTAAATTTATTTTTT
78231 CGTTTTAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.69
Consensus pattern (29 bp):
TTCTTTTTAAAATTTAAATTTATTTTTTG
Found at i:79242 original size:56 final size:56
Alignment explanation
Indices: 79176--79343 Score: 218
Period size: 56 Copynumber: 3.0 Consensus size: 56
79166 ACTATGATCC
* *
79176 TCATTAAACTTTTAAACATTCCAACTTTAGTCCCAAACTATGA-TCATTCTAATTAT
1 TCATTAAACTTTTGAACATTCCAACTTTA-TCCCAAACTATGACTCATTCTAATTAG
79232 TCATTAAAC-TTTGAACATTCCAA-TTTCATCCTCAAACTATGACTCATTCTAAATTAG
1 TCATTAAACTTTTGAACATTCCAACTTT-ATCC-CAAACTATGACTCATTCT-AATTAG
* *
79289 TCATTAAACTTTTGAACATTCTAAC-TCATCCCAAACTATGACTCTCATTCTAATT
1 TCATTAAACTTTTGAACATTCCAACTTTATCCCAAACTATGA--CTCATTCTAATT
79344 GGTCCCAAAC
Statistics
Matches: 100, Mismatches: 4, Indels: 15
0.84 0.03 0.13
Matches are distributed among these distances:
54 6 0.06
55 24 0.24
56 26 0.26
57 22 0.22
58 22 0.22
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.38
Consensus pattern (56 bp):
TCATTAAACTTTTGAACATTCCAACTTTATCCCAAACTATGACTCATTCTAATTAG
Found at i:79308 original size:29 final size:28
Alignment explanation
Indices: 79210--79312 Score: 84
Period size: 29 Copynumber: 3.6 Consensus size: 28
79200 CTTTAGTCCC
* * *
79210 AAACTATGATCATTCT-AATTATTCATT
1 AAACTTTGAACATTCTAAATTAGTCATT
* * * *
79237 AAACTTTGAACATTCCAATTTCA-TCCTC
1 AAACTTTGAACATTCTAAATT-AGTCATT
* *
79265 AAACTATGACTCATTCTAAATTAGTCATT
1 AAACTTTGA-ACATTCTAAATTAGTCATT
79294 AAACTTTTGAACATTCTAA
1 AAAC-TTTGAACATTCTAA
79313 CTCATCCCAA
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
27 13 0.23
28 15 0.26
29 25 0.44
30 4 0.07
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (28 bp):
AAACTTTGAACATTCTAAATTAGTCATT
Found at i:79378 original size:114 final size:113
Alignment explanation
Indices: 79176--79381 Score: 267
Period size: 114 Copynumber: 1.8 Consensus size: 113
79166 ACTATGATCC
* * **
79176 TCATTAAACTTTTAAACATTCCAACTTTAGTCCCAAACTATGATCATTCTAATTATTCATTAAAC
1 TCATTAAACTTTTAAACATTCCAACTTCAGTCCCAAACTATGATCATTCTAATTAGTCACCAAAC
79241 TTTGAACATTCCAATTTCATCCTCAAACTATGACTCATTCTAAATTAG
66 TTTGAACATTCCAATTTCATCCTCAAACTATGACTCATTCTAAATTAG
* * *
79289 TCATTAAACTTTTGAACATTCTAAC-TCA-TCCCAAACTATGACTCTCATTCTAATTGGTC-CCA
1 TCATTAAACTTTTAAACATTCCAACTTCAGTCCCAAACTATGA---TCATTCTAATTAGTCACCA
*
79351 AACTTTTTAATC-TTCCAATTTCATCCTCAAA
63 AAC-TTTGAA-CATTCCAATTTCATCCTCAAA
79382 TTCATCCAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
111 13 0.16
112 2 0.03
113 27 0.34
114 37 0.46
115 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.38
Consensus pattern (113 bp):
TCATTAAACTTTTAAACATTCCAACTTCAGTCCCAAACTATGATCATTCTAATTAGTCACCAAAC
TTTGAACATTCCAATTTCATCCTCAAACTATGACTCATTCTAAATTAG
Done.