genome.fa.s7478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007478.1 Hibiscus syriacus cultivar Beakdansim tig00020581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43383

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619--3658	14	2.9	14	80	0	53	32	17	22	27	1.96
7447--7553	24	4.5	24	76	6	101	49	16	12	21	1.78
7459--7518	12	5.0	12	72	8	59	48	18	15	18	1.81
7447--7555	48	2.3	47	85	6	139	49	16	12	21	1.78
12718--12749	14	2.3	14	100	0	64	37	6	31	25	1.81
14465--14535	35	2.0	35	97	0	133	21	32	2	43	1.67
16428--16457	2	15.0	2	100	0	60	50	0	0	50	1.00
19771--19948	64	2.8	64	80	0	205	34	16	20	27	1.95
20513--20555	21	2.0	23	86	9	63	32	20	23	23	1.98
22871--22921	20	2.6	19	87	6	66	29	11	21	37	1.89
25503--25606	37	2.8	37	82	2	129	41	12	12	33	1.81
26043--26104	2	31.0	2	100	0	124	50	0	0	50	1.00
26194--26296	3	36.0	3	68	21	53	29	4	0	65	1.20
26175--26296	24	5.5	21	70	17	70	27	4	1	65	1.22
26194--26301	23	4.5	22	78	14	85	28	4	0	65	1.18
26209--26299	11	7.8	12	70	20	59	29	4	1	64	1.20
26909--26933	13	1.9	13	100	0	50	16	0	4	80	0.87
31033--31092	16	3.8	16	74	25	65	81	6	11	0	0.86
32555--34141	106	15.0	106	88	1	2206	34	24	18	23	1.96
34872--34968	37	2.6	37	86	0	140	41	15	12	30	1.84
35660--35700	11	3.6	11	87	6	55	24	4	4	65	1.32
35712--35758	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36144--36240	9	11.0	9	70	13	60	27	0	0	72	0.85
36139--36233	4	24.0	4	70	22	51	28	0	0	71	0.86
36147--36214	14	5.4	14	72	19	60	29	0	0	70	0.87
36153--36218	19	4.2	15	74	25	57	25	0	0	74	0.82
36170--36238	19	3.6	19	86	9	88	24	0	0	75	0.81
36144--36231	43	1.9	46	84	11	119	28	0	0	71	0.86
36157--36251	34	2.8	32	78	9	100	23	0	1	75	0.86
38494--38518	3	8.3	3	100	0	50	68	0	0	32	0.90
39316--39418	38	2.7	38	80	3	109	40	13	22	23	1.89
39994--40533	45	12.0	44	81	5	482	40	18	15	25	1.90
39994--40533	90	6.0	90	84	2	577	40	18	15	25	1.90
40029--40533	179	2.8	178	84	2	609	40	18	16	24	1.90
40575--40641	35	1.9	34	87	3	98	49	16	13	20	1.79
41764--41814	25	2.1	24	82	13	61	41	17	13	27	1.87

Tables:   1

The End!