Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000748.1 Hibiscus syriacus cultivar Beakdansim tig00001441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134572

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--129
40
2.0
41
88
6
123
26
25
28
19
1.99
57--129
20
3.7
20
80
7
85
28
23
28
19
1.98
270--329
29
2.0
31
93
6
106
43
16
6
33
1.74
6393--6449
23
2.5
23
82
0
69
21
22
24
31
1.98
16313--16341
15
1.9
15
100
0
58
41
13
17
27
1.87
16605--17102
200
2.5
200
86
1
658
31
12
14
41
1.84
20051--20090
18
2.2
18
100
0
80
5
40
0
55
1.22
20199--20326
66
2.0
65
80
7
143
25
40
1
32
1.65
21202--21241
22
1.9
21
85
10
55
27
20
25
27
1.99
23082--23864
182
4.3
182
87
2
1074
27
17
12
42
1.85
24163--24226
3
21.3
3
100
0
128
32
0
0
67
0.91
28950--29099
19
7.6
20
70
8
85
28
12
26
34
1.92
32125--32174
26
2.0
24
92
7
82
16
22
10
52
1.73
33106--33153
19
2.6
19
87
9
64
72
0
16
10
1.10
41602--41705
22
4.8
22
85
5
131
20
26
30
22
1.98
45562--45783
117
1.9
117
83
3
286
28
14
9
47
1.76
46846--46880
10
3.4
10
88
4
52
11
20
8
60
1.57
46847--46888
21
2.0
22
86
13
61
11
16
11
59
1.61
48988--49027
20
2.0
21
90
5
64
60
2
10
27
1.42
54241--54294
3
17.7
3
78
3
54
40
0
1
57
1.09
68044--68375
42
7.9
41
75
11
244
26
20
6
46
1.75
74953--75007
20
2.6
20
83
11
65
23
29
29
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74953--75009
23
2.7
21
86
8
71
22
29
28
19
1.98
74998--75022
13
1.9
13
100
0
50
28
24
32
16
1.96
84050--84086
2
19.0
2
88
5
58
48
2
0
48
1.15
84621--84680
2
30.0
2
100
0
120
50
0
0
50
1.00
87592--87623
2
16.0
2
100
0
64
50
0
0
50
1.00
97507--97542
15
2.3
16
90
4
56
61
2
2
33
1.25
98905--98955
18
2.9
17
91
5
84
17
47
19
15
1.83
98977--99044
29
2.3
29
87
0
91
22
8
26
42
1.82
106098--106153
19
2.9
19
85
12
78
16
21
28
33
1.95
106098--106146
10
4.8
11
83
16
70
16
20
26
36
1.93
106099--106153
9
5.6
10
83
12
78
14
21
29
34
1.93
106168--106218
18
2.9
17
91
5
84
17
47
19
15
1.83
106196--106238
13
3.3
12
84
12
50
16
39
25
18
1.91
106216--106246
7
4.4
7
100
0
62
12
32
29
25
1.93
106246--106313
29
2.3
29
87
0
91
22
8
26
42
1.82
109091--109144
25
2.3
23
74
6
54
20
7
12
59
1.58
116961--117315
194
1.8
193
88
0
539
37
11
13
37
1.82
117306--117381
15
5.1
15
69
13
59
42
19
9
28
1.82
119852--120006
30
5.1
30
95
1
249
30
25
22
21
1.99
121299--121343
21
2.1
21
87
0
63
15
24
28
31
1.96
123525--123586
3
21.0
3
96
3
117
66
0
0
33
0.92
124979--125029
26
2.1
25
85
10
70
13
9
19
56
1.65

Tables:   1

The End!