genome.fa.s7480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007480.1 Hibiscus syriacus cultivar Beakdansim tig00020605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83086

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831--929	3	34.3	3	78	11	109	67	0	1	31	0.97
2320--2361	21	2.0	21	95	0	75	30	14	7	47	1.71
2356--2454	33	3.0	33	91	1	155	33	7	15	44	1.73
2497--2527	15	2.1	15	93	0	53	22	6	9	61	1.50
7042--7090	16	3.2	16	72	16	59	26	34	2	36	1.68
7033--7090	29	2.0	29	100	0	116	27	31	3	37	1.73
16937--17014	39	2.0	40	94	2	140	28	47	15	8	1.75
17004--17144	29	4.9	29	86	0	174	22	39	21	16	1.92
17163--17252	45	2.0	45	97	0	171	22	34	20	23	1.97
17242--17285	23	1.9	23	100	0	88	22	22	27	27	1.99
17710--17771	28	2.1	30	91	5	101	29	1	12	56	1.46
17738--17835	50	2.1	49	81	9	114	41	3	7	47	1.46
18065--18109	21	2.2	21	84	4	56	35	0	8	55	1.31
21272--21973	60	12.0	60	74	14	558	40	1	12	45	1.52
21272--22182	109	7.9	112	76	14	547	40	1	12	45	1.50
21361--21515	73	2.1	72	79	12	156	39	0	12	48	1.41
21383--21497	48	2.3	49	91	2	178	40	0	10	48	1.37
21469--21516	14	3.6	14	81	16	66	35	0	16	47	1.47
21331--22018	130	5.2	130	72	15	492	40	1	12	45	1.51
21583--21619	11	3.1	12	88	11	58	48	0	10	40	1.38
21696--21798	21	4.3	25	69	24	78	37	0	16	45	1.48
21707--21744	10	3.7	10	96	3	67	39	0	18	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21650--21864	70	3.2	70	85	13	342	40	0	15	44	1.46
21590--22175	169	3.3	182	82	12	735	40	0	13	45	1.44
21668--22235	169	3.4	168	75	13	606	40	0	13	46	1.44
21957--22082	60	2.1	59	95	1	225	41	0	13	45	1.43
22132--22214	39	2.1	40	90	2	132	38	0	10	50	1.37
22203--22250	14	3.6	14	81	16	66	35	0	16	47	1.47
24461--24491	15	2.1	14	94	5	53	54	6	0	38	1.26
24466--24512	16	3.0	16	84	9	53	59	10	0	29	1.31
24813--24853	22	1.9	21	85	5	55	53	19	0	26	1.45
24981--25045	26	2.4	27	82	10	78	7	33	6	52	1.55
25088--25154	33	2.0	33	94	0	116	28	28	10	32	1.90
25275--25312	18	2.1	19	95	5	69	26	15	57	0	1.38
25321--25409	29	3.1	29	85	0	115	13	22	40	23	1.89
26606--26649	18	2.4	18	96	0	79	59	15	11	13	1.62
29072--29128	23	2.5	23	73	18	55	52	1	7	38	1.39
34583--34619	2	18.5	2	100	0	74	48	0	0	51	1.00
37338--37666	170	2.0	165	94	5	581	34	16	17	31	1.93
38358--38456	49	2.0	48	84	9	130	41	21	11	26	1.86
48900--48969	26	2.7	26	90	0	104	24	37	21	17	1.94
50629--50689	21	3.2	21	63	29	55	32	4	19	42	1.73
50621--50742	35	3.4	37	82	10	155	34	4	17	43	1.70
55217--55309	35	2.7	34	82	9	100	33	6	19	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55252--55312	21	3.2	21	65	29	64	31	4	21	42	1.74
55251--55358	35	3.1	35	86	5	148	31	4	18	45	1.70
60175--60295	19	5.9	19	78	14	134	19	19	25	34	1.96
60188--60292	42	2.5	42	100	0	210	19	20	25	35	1.95
60387--60444	5	11.2	5	86	1	71	37	41	20	0	1.53
60388--60452	20	3.2	20	86	4	85	36	40	23	0	1.55
61210--61281	23	3.3	23	77	15	98	36	25	19	19	1.95
61196--61322	19	6.3	19	77	13	128	33	23	20	22	1.97
61199--61303	42	2.5	42	98	0	201	35	24	20	20	1.96
61326--61374	21	2.3	21	92	0	80	16	20	30	32	1.94
66288--66318	15	2.1	15	100	0	62	38	12	25	22	1.90
72602--72635	15	2.4	14	85	9	50	38	0	5	55	1.24
72577--72631	20	2.8	20	73	13	51	36	1	7	54	1.39
75830--75936	52	2.0	53	90	3	171	42	15	22	19	1.89
81368--81407	2	20.0	2	100	0	80	50	0	0	50	1.00
81622--81654	2	17.0	2	93	6	59	51	0	0	48	1.00

Tables:   1

The End!