genome.fa.s7481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007481.1 Hibiscus syriacus cultivar Beakdansim tig00020608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55553

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655--750	37	2.6	36	85	1	129	41	15	11	31	1.83
1305--1338	9	3.8	9	84	0	50	29	5	0	64	1.17
1300--1462	11	13.5	12	65	22	67	23	6	1	68	1.19
1354--1459	24	4.5	23	69	19	60	24	3	1	69	1.15
1377--1463	33	2.8	31	73	23	92	21	4	1	72	1.09
1894--1989	4	23.0	4	70	15	52	27	2	4	66	1.21
1959--2012	22	2.5	22	76	8	56	18	3	3	74	1.12
5043--5145	38	2.7	38	80	3	109	40	13	22	23	1.89
5721--6260	45	12.0	44	81	5	464	40	18	15	25	1.90
5721--6260	90	6.0	90	83	4	556	40	18	15	25	1.90
5757--6260	179	2.8	178	84	2	609	40	18	15	24	1.90
6302--6367	35	1.9	34	87	6	98	48	16	13	21	1.80
7505--7555	25	2.1	24	82	13	61	41	17	13	27	1.87
9542--9603	3	20.7	3	100	0	124	66	0	0	33	0.92
19011--19037	14	1.9	14	100	0	54	59	0	0	40	0.98
19255--19293	21	1.9	21	85	15	55	28	2	0	69	1.02
19372--19425	14	3.6	15	85	7	74	50	0	1	48	1.11
19372--19427	15	3.8	14	82	17	69	48	0	1	50	1.11
19374--19437	30	2.2	29	81	13	69	51	0	3	45	1.17
20730--20907	96	1.9	94	86	2	257	38	17	19	24	1.93
21824--21869	22	2.1	22	95	0	83	17	6	19	56	1.62
22127--22178	18	2.9	18	94	0	86	28	34	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25431--25737	157	2.0	156	89	0	470	36	29	12	21	1.90
25764--25842	24	3.3	24	84	7	97	41	18	13	25	1.88
28106--28177	37	1.9	37	91	0	117	29	22	27	20	1.99
30124--30148	13	1.9	13	100	0	50	40	12	0	48	1.40
30154--30460	156	2.0	156	91	0	497	35	31	13	19	1.90
30481--30549	24	2.9	24	76	8	68	46	17	11	24	1.81
32679--32715	7	5.4	7	87	6	58	29	27	27	16	1.97
32679--32715	13	2.7	14	87	8	58	29	27	27	16	1.97
32712--32749	5	7.8	5	82	5	51	5	21	52	21	1.66
32714--32750	19	1.9	19	100	0	74	8	21	48	21	1.76
32705--32749	24	2.0	22	91	8	72	8	22	48	20	1.76
32717--32758	19	2.2	19	91	0	66	7	23	47	21	1.75
32743--32780	19	2.0	19	89	0	58	23	26	28	21	1.99
32753--32847	29	3.4	28	78	11	88	30	28	25	15	1.96
32748--32843	19	5.0	19	81	11	90	28	28	26	17	1.98
32753--32850	10	10.3	9	76	10	97	29	29	25	15	1.96
39964--39993	13	2.2	14	94	5	53	26	26	30	16	1.97
39964--39993	7	4.4	7	91	8	53	26	26	30	16	1.97
43080--43110	11	2.8	11	95	0	53	64	9	9	16	1.48
43605--43651	23	2.0	23	84	8	60	55	14	2	27	1.51
46864--46908	20	2.2	20	84	7	56	64	0	20	15	1.29
50082--50178	45	2.2	45	94	0	167	35	19	14	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53739--53784	23	2.0	22	88	12	67	56	13	2	28	1.48

Tables:   1

The End!