genome.fa.s7482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007482.1 Hibiscus syriacus cultivar Beakdansim tig00020627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93201

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171--1249	27	2.9	27	98	0	131	15	20	12	51	1.75
6208--6264	25	2.2	26	93	3	98	40	22	5	31	1.76
9503--9566	30	2.1	31	94	2	112	23	3	32	40	1.70
9503--9561	31	2.1	27	84	15	75	25	3	32	38	1.72
20018--20072	24	2.3	24	96	0	101	25	7	23	43	1.79
21839--21885	3	15.7	3	82	8	60	65	2	0	31	1.04
23395--23434	19	2.0	21	85	9	57	70	2	5	22	1.19
23668--23725	9	5.7	10	78	17	66	74	3	1	20	1.06
23668--23717	10	5.1	10	85	4	57	76	2	2	20	0.99
34610--34978	20	18.5	20	85	4	458	34	26	18	20	1.96
35651--35697	24	2.0	24	87	8	69	25	14	21	38	1.92
35871--35895	12	2.1	12	100	0	50	72	0	28	0	0.86
38198--38504	19	17.4	19	79	16	358	47	18	20	14	1.83
38226--38504	52	5.2	53	90	5	358	47	17	20	14	1.83
38265--38504	71	3.4	71	83	11	355	47	17	20	15	1.83
38198--38536	142	2.4	137	89	6	497	46	18	20	14	1.83
38533--38634	19	5.6	19	85	12	151	14	23	17	44	1.86
38741--38777	14	2.6	14	91	0	65	45	21	0	32	1.52
38772--38844	12	6.0	12	67	20	53	57	16	1	24	1.47
38758--38830	38	1.9	38	97	0	137	53	16	1	28	1.51
40701--40757	14	3.7	14	77	20	60	45	22	21	10	1.82
40646--40779	19	7.6	19	76	16	119	45	23	19	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40664--40757	51	1.9	47	85	8	125	45	24	20	9	1.80
40683--40774	33	2.8	33	93	1	159	46	21	20	10	1.81
40775--40903	19	7.3	19	75	17	125	8	17	28	45	1.77
40775--40866	33	2.8	33	93	3	150	7	18	28	45	1.76
40945--41322	93	4.1	93	98	0	740	45	19	12	22	1.84
40945--41322	185	2.0	186	98	0	740	45	19	12	22	1.84
43025--43081	14	3.7	14	79	20	69	40	24	26	8	1.84
43017--43103	33	2.6	33	92	0	156	44	20	25	9	1.81
43024--43100	19	4.6	18	75	23	71	42	23	24	9	1.83
43104--43193	20	4.8	20	72	19	68	12	26	18	42	1.86
43273--43343	33	2.2	33	92	0	115	47	18	22	11	1.80
43524--43578	22	2.5	22	81	0	74	20	16	40	23	1.91
43724--43897	20	8.6	20	83	5	217	19	19	26	34	1.96
43726--43897	60	2.8	60	84	0	245	19	19	26	34	1.96
43865--43918	20	2.7	21	88	5	76	12	16	25	44	1.84
43724--43917	60	3.2	60	82	2	237	19	19	25	35	1.95
43910--43986	21	3.7	20	70	13	57	27	16	23	32	1.96
43884--43982	42	2.4	43	76	8	98	22	18	23	36	1.95
43972--44023	20	2.6	20	96	0	95	21	13	26	38	1.90
51082--51139	20	2.6	22	89	10	84	25	22	20	31	1.98
51127--51267	64	2.2	63	82	7	169	25	24	18	31	1.97
59396--59428	16	2.1	16	94	0	57	24	21	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63498--63546	23	2.1	23	88	7	73	26	2	14	57	1.48
69127--69176	24	2.1	24	88	7	75	26	2	14	58	1.47
78726--78776	26	2.0	26	88	0	75	15	13	19	50	1.77
93086--93145	29	2.0	31	81	9	72	65	6	13	15	1.46

Tables:   1

The End!