genome.fa.s7483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007483.1 Hibiscus syriacus cultivar Beakdansim tig00020637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104192

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2500--2589	18	5.1	18	94	2	155	22	16	32	28	1.96
6248--6293	20	2.3	20	96	0	83	23	30	23	21	1.99
10023--10098	2	38.5	2	85	7	75	55	1	2	40	1.22
15338--15377	2	20.0	2	100	0	80	50	0	0	50	1.00
19692--19743	23	2.3	23	82	0	77	30	3	3	61	1.32
22312--22376	24	2.8	22	81	9	67	32	0	3	64	1.09
24720--24796	37	2.1	37	100	0	154	35	20	20	23	1.96
30459--30501	3	14.0	3	81	13	52	67	2	0	30	1.03
30463--30498	10	3.7	10	88	3	56	69	2	0	27	1.02
30459--30501	13	3.2	14	83	9	63	67	2	0	30	1.03
30722--31085	40	8.6	41	73	13	222	24	19	30	25	1.98
30675--31068	129	3.1	129	96	0	700	24	19	30	26	1.98
30718--31092	83	4.4	83	72	13	237	24	19	30	25	1.98
31111--31199	28	3.1	29	82	7	94	46	14	11	28	1.79
31131--31199	28	2.4	28	90	2	102	46	14	10	28	1.77
32023--32086	30	2.1	30	88	0	92	39	14	9	37	1.78
32074--32176	52	2.0	53	94	1	181	35	18	13	32	1.90
32172--32297	28	4.5	28	82	5	137	47	15	10	26	1.77
32187--32283	29	3.4	28	86	6	133	46	15	10	27	1.78
32595--32698	36	3.0	36	81	4	124	35	11	20	32	1.88
32591--32714	36	3.5	36	77	8	112	37	12	20	29	1.89
32666--32898	105	2.3	101	85	8	292	37	12	20	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32872--32953	36	2.3	36	78	4	94	31	12	19	36	1.89
32872--32966	36	2.6	36	78	3	93	35	11	17	34	1.86
32814--33132	167	1.9	166	84	7	423	37	11	17	32	1.87
32435--33065	273	2.3	266	84	6	797	38	11	17	31	1.86
33056--33173	36	3.3	35	83	9	157	36	12	16	33	1.87
33524--33589	4	17.0	4	81	6	82	28	3	21	46	1.66
34766--34852	12	7.1	13	70	19	53	3	12	13	70	1.30
34775--34824	11	4.7	11	79	13	52	4	12	12	72	1.26
34782--34824	23	1.9	23	90	4	70	4	11	11	72	1.27
40762--40804	3	14.0	3	81	13	52	67	2	0	30	1.03
40766--40801	10	3.7	10	88	3	56	69	2	0	27	1.02
40762--40804	13	3.2	14	83	9	63	67	2	0	30	1.03
43246--43326	40	2.0	41	87	2	119	54	6	6	33	1.50
45475--45512	20	1.9	20	88	0	58	2	26	0	71	1.00
45821--45851	10	3.1	10	100	0	62	9	32	0	58	1.31
46905--46980	21	3.5	22	82	12	79	30	15	25	28	1.96
48061--48090	2	15.0	2	92	0	51	46	0	3	50	1.18
48608--48646	18	2.2	18	85	0	51	15	17	35	30	1.91
53202--53249	17	2.8	17	96	3	87	37	6	10	45	1.64
55632--55999	159	2.3	160	90	3	578	19	11	30	37	1.88
65720--65756	15	2.5	15	95	0	65	8	70	16	5	1.30
68294--68328	16	2.2	16	89	0	52	25	17	40	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69109--69141	6	5.5	6	96	0	57	18	39	12	30	1.87
71546--71585	21	1.9	21	85	10	55	52	2	7	37	1.43
73431--73497	2	33.5	2	93	0	116	49	2	0	47	1.16
73635--73695	27	2.3	27	81	16	65	32	4	1	60	1.28
73687--73725	12	3.0	13	85	11	53	23	2	0	74	0.94
73679--73746	21	3.1	21	72	10	57	23	2	0	73	0.97
73614--73731	13	10.2	12	67	21	51	29	4	0	65	1.17
74858--74885	4	7.0	4	100	0	56	25	0	0	75	0.81
78191--78256	16	4.1	14	77	22	60	80	7	10	1	0.97
78189--78260	18	3.6	19	77	12	65	80	6	11	1	0.96
78189--78258	32	2.1	33	87	10	99	81	7	10	1	0.93
78194--78246	17	3.3	15	76	23	54	83	5	11	0	0.81
78863--78917	22	2.5	22	100	0	110	36	27	12	23	1.91
79883--81357	106	14.0	106	90	2	2233	34	25	18	22	1.96
82715--82741	2	13.5	2	100	0	54	48	0	0	51	1.00
82914--82969	22	2.5	22	80	13	69	30	3	0	66	1.09
82914--82992	23	3.4	21	77	16	59	29	3	0	67	1.08
82935--83004	23	3.1	21	76	21	63	25	2	0	71	1.00
82914--83004	45	2.0	44	81	10	105	28	4	0	67	1.10
82945--83002	28	2.1	27	81	9	64	27	3	0	68	1.05
82953--83014	22	2.9	22	77	17	60	24	4	0	70	1.06
83089--83144	19	2.9	19	75	19	62	23	8	1	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88686--88723	19	2.0	20	85	10	53	31	0	7	60	1.25
93485--93619	68	2.0	68	100	0	270	28	19	11	40	1.87
93494--93635	68	2.1	67	92	1	187	29	20	9	40	1.85
97960--98094	68	2.0	68	94	0	234	30	17	11	40	1.85
99986--100033	22	2.2	22	96	0	87	35	20	20	22	1.96
101134--101179	23	2.0	23	83	12	58	47	19	0	32	1.50

Tables:   1

The End!