Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007484.1 Hibiscus syriacus cultivar Beakdansim tig00020655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96278

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6224--6266
23
1.9
21
81
13
50
32
18
13
34
1.90
7978--8045
26
2.6
26
83
0
73
17
30
19
32
1.95
10114--10164
2
26.0
2
92
4
86
50
0
1
47
1.12
12864--12934
15
4.9
15
70
22
55
60
0
29
9
1.29
12881--12939
25
2.4
25
94
0
109
61
0
27
11
1.31
16545--16573
13
2.3
13
94
5
51
68
0
17
13
1.20
19230--19263
12
2.8
12
91
8
52
79
8
11
0
0.94
23585--23641
30
1.9
30
96
0
105
19
17
24
38
1.93
24704--24760
30
1.9
30
96
0
105
19
17
24
38
1.93
30179--30229
15
3.1
16
77
11
50
15
11
1
70
1.25
30560--30616
20
2.8
20
84
10
80
82
10
7
0
0.84
30560--30634
21
3.7
21
77
10
66
77
13
9
0
0.99
30575--30608
13
2.5
13
95
4
59
79
8
11
0
0.94
30561--30585
11
2.3
11
100
0
50
92
8
0
0
0.40
30560--30627
22
3.4
19
76
13
64
79
11
8
0
0.94
30560--30627
20
3.3
20
80
9
75
79
11
8
0
0.94
36183--36233
23
2.2
24
89
3
77
17
7
7
66
1.41
36939--36995
30
1.9
30
96
0
105
19
17
24
38
1.93
46163--46197
15
2.4
14
90
4
52
51
0
20
28
1.47
50107--50156
19
2.6
19
81
9
57
44
6
10
40
1.63
51326--51411
13
7.2
12
72
22
58
29
3
37
30
1.74
51308--51412
36
2.9
36
95
1
185
28
4
36
30
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51754--51804
19
2.6
20
87
3
68
45
5
15
33
1.71
53881--53966
11
7.2
12
74
22
67
29
2
37
31
1.70
53864--53948
11
7.2
12
70
26
65
30
1
36
31
1.65
53863--53967
36
2.9
36
92
1
167
29
2
36
31
1.72
54310--54360
19
2.6
20
87
3
68
45
5
15
33
1.71
56420--56504
13
7.2
12
71
19
63
28
3
35
32
1.74
56419--56520
36
2.9
36
89
1
152
27
3
35
33
1.75
60823--60874
22
2.3
23
93
3
88
28
3
34
32
1.76
60825--60904
36
2.2
38
80
17
107
30
5
33
31
1.79
60843--60914
36
2.0
36
100
0
144
27
5
36
30
1.80
63949--64028
35
2.3
34
87
10
110
31
2
33
32
1.71
63983--64037
23
2.4
23
90
0
92
30
1
34
32
1.69
64381--64428
20
2.5
20
86
3
62
45
6
14
33
1.70
69477--69505
15
2.0
15
93
6
51
0
20
3
75
0.94
74110--74155
23
2.0
23
83
8
58
36
6
8
47
1.60
78690--78735
23
2.0
23
83
8
58
36
6
8
47
1.60
86098--86133
5
7.2
5
93
0
63
0
19
2
77
0.88
90130--90178
16
2.9
16
84
6
53
61
0
22
16
1.34
91908--91946
19
2.1
19
90
9
62
23
12
0
64
1.28

Tables:   1

The End!