Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007485.1 Hibiscus syriacus cultivar Beakdansim tig00020664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61441

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1910--2046
64
2.2
65
81
10
167
30
18
22
27
1.98
3517--3560
24
2.0
24
82
13
58
34
0
9
56
1.31
3889--3920
15
2.1
16
94
5
57
34
0
0
65
0.93
33631--33656
11
2.4
11
100
0
52
34
0
11
53
1.37
32053--33722
832
2.0
832
98
0
3250
32
11
20
35
1.89
36913--36955
20
2.2
20
87
8
61
41
4
4
48
1.44
37695--37779
24
3.5
24
77
0
80
40
18
15
25
1.90
39244--39305
31
2.0
31
93
0
106
37
14
24
24
1.93
41076--41114
20
2.0
20
85
9
55
30
23
20
25
1.98
42566--42628
19
3.3
19
100
0
126
68
20
11
0
1.20
46390--46430
17
2.4
17
95
0
73
31
21
17
29
1.96
49505--49539
18
1.9
18
94
0
61
28
34
20
17
1.95
51664--51732
34
2.1
32
86
5
93
26
27
14
31
1.95
52049--52201
20
7.7
20
90
0
216
32
23
25
18
1.97
52049--52201
40
3.8
40
93
0
243
32
23
25
18
1.97
52235--52277
22
1.9
23
85
4
61
23
20
30
25
1.99
52521--52560
21
1.9
21
89
0
62
50
10
10
30
1.69
53696--53743
19
2.5
20
82
3
62
29
12
6
52
1.63
54418--55065
328
2.0
319
95
2
1152
33
19
16
30
1.94
55366--55411
20
2.3
20
92
0
83
30
23
23
21
1.99
55431--55492
22
3.0
20
80
17
81
20
22
32
24
1.98
55445--55512
22
2.9
23
85
12
86
20
22
32
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55919--56033
51
2.3
51
84
0
149
33
3
10
52
1.53
56434--56470
14
2.6
14
86
4
56
21
10
0
67
1.21
59154--59188
3
12.0
3
87
6
54
34
0
0
65
0.93
59157--59209
26
2.1
26
85
3
72
35
0
0
64
0.94

Tables:   1

The End!