Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007486.1 Hibiscus syriacus cultivar Beakdansim tig00020665_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 221202
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


File 2 of 2

Found at i:212662 original size:21 final size:21

Alignment explanation


    Indices: 212629--212682  Score: 58
    Period size: 21  Copynumber: 2.6  Consensus size: 21

     212619 ACTTTGGTTC

                    *         *  
     212629 AAAA-TCAACATTTCA-ACTT
          1 AAAAGTCAGCATTTCATAATT

                 *                
     212648 AAAATTTCAGCATTTCATAATT
          1 AAAA-GTCAGCATTTCATAATT

                         
     212670 AAAAGTCAGCATT
          1 AAAAGTCAGCATT

     212683 GAATACCCCA


Statistics
Matches: 29,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  19    4  0.14
  21   18  0.62
  22    7  0.24

ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33


Consensus pattern (21 bp):   
AAAAGTCAGCATTTCATAATT

Done.