Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007488.1 Hibiscus syriacus cultivar Beakdansim tig00020680_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 138872
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Found at i:2542 original size:12 final size:12
Alignment explanation
Indices: 2525--2589 Score: 60
Period size: 12 Copynumber: 5.4 Consensus size: 12
2515 ACAGAGATAT
2525 CAGAAATTAGAA
1 CAGAAATTAGAA
* *
2537 CAGAAATCAGAG
1 CAGAAATTAGAA
*
2549 CATAAATTAGAA
1 CAGAAATTAGAA
*
2561 CAG-AATTCAGAG
1 CAGAAATT-AGAA
* *
2573 CAGAAATCATAA
1 CAGAAATTAGAA
2585 CAGAA
1 CAGAA
2590 TTCAAATAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
11 4 0.10
12 34 0.83
13 3 0.07
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.15
Consensus pattern (12 bp):
CAGAAATTAGAA
Found at i:2590 original size:24 final size:24
Alignment explanation
Indices: 2525--2593 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 24
2515 ACAGAGATAT
*
2525 CAGAAATTAGAACAGAAATCAGAG
1 CAGAAATTAGAACAGAATTCAGAG
*
2549 CATAAATTAGAACAGAATTCAGAG
1 CAGAAATTAGAACAGAATTCAGAG
* *
2573 CAGAAATCATAACAGAATTCA
1 CAGAAATTAGAACAGAATTCA
2594 AATAAAATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.17
Consensus pattern (24 bp):
CAGAAATTAGAACAGAATTCAGAG
Found at i:6118 original size:24 final size:24
Alignment explanation
Indices: 6059--6129 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
6049 ACAGAGATAT
* *
6059 CAGAAATTAGAACAAAAATCAGAG
1 CAGAAATTATAACAAAATTCAGAG
6083 CAGAAATTATAACAAAATTCAGAG
1 CAGAAATTATAACAAAATTCAGAG
*
6107 CAGAAATCATAA-AAGAATTCAGA
1 CAGAAATTATAACAA-AATTCAGA
6130 TAAAATATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 2 0.05
24 41 0.95
ACGTcount: A:0.56, C:0.13, G:0.14, T:0.17
Consensus pattern (24 bp):
CAGAAATTATAACAAAATTCAGAG
Found at i:9585 original size:32 final size:32
Alignment explanation
Indices: 9530--9591 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
9520 GCTTGCGAGC
* *
9530 CTACCCAAGAAAATTATCGGGGCCACAGAGGA
1 CTACCCAAGAAAAATATCAGGGCCACAGAGGA
* *
9562 CTACCCAAGAAAAATCTCAGGGCCGCAGAG
1 CTACCCAAGAAAAATATCAGGGCCACAGAG
9592 CCTACCATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.27, G:0.24, T:0.11
Consensus pattern (32 bp):
CTACCCAAGAAAAATATCAGGGCCACAGAGGA
Found at i:9772 original size:12 final size:12
Alignment explanation
Indices: 9757--9848 Score: 85
Period size: 12 Copynumber: 7.7 Consensus size: 12
9747 AAATTAGAAT
9757 AGAAATCAGAGC
1 AGAAATCAGAGC
* *
9769 AGAAATCATAAC
1 AGAAATCAGAGC
*
9781 AGAATTCAGAGC
1 AGAAATCAGAGC
* *
9793 AGAAATCATAAC
1 AGAAATCAGAGC
* *
9805 AGAATTCAGGGC
1 AGAAATCAGAGC
* *
9817 AGAAATCATAAC
1 AGAAATCAGAGC
* *
9829 AGAATTCAGAGT
1 AGAAATCAGAGC
9841 AGAAATCA
1 AGAAATCA
9849 AAACATAAAT
Statistics
Matches: 59, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.16
Consensus pattern (12 bp):
AGAAATCAGAGC
Found at i:9861 original size:24 final size:24
Alignment explanation
Indices: 9757--9853 Score: 158
Period size: 24 Copynumber: 4.0 Consensus size: 24
9747 AAATTAGAAT
*
9757 AGAAATCAGAGCAGAAATCATAAC
1 AGAATTCAGAGCAGAAATCATAAC
9781 AGAATTCAGAGCAGAAATCATAAC
1 AGAATTCAGAGCAGAAATCATAAC
*
9805 AGAATTCAGGGCAGAAATCATAAC
1 AGAATTCAGAGCAGAAATCATAAC
* *
9829 AGAATTCAGAGTAGAAATCAAAAC
1 AGAATTCAGAGCAGAAATCATAAC
9853 A
1 A
9854 TAAATCAGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15
Consensus pattern (24 bp):
AGAATTCAGAGCAGAAATCATAAC
Found at i:12371 original size:24 final size:24
Alignment explanation
Indices: 12354--12465 Score: 172
Period size: 24 Copynumber: 4.7 Consensus size: 24
12344 ATCAAAACAT
12354 AATCCAGGTCAAGTATCAGATCAA
1 AATCCAGGTCAAGTATCAGATCAA
12378 AATCCAGGTCAAGTATCAGATCAA
1 AATCCAGGTCAAGTATCAGATCAA
*
12402 AATCCAGGTCAAGTATTC-GATCAG
1 AATCCAGGTCAAGTA-TCAGATCAA
* *
12426 AATCCAGGTCAAGTATCCGATCAC
1 AATCCAGGTCAAGTATCAGATCAA
*
12450 AATCCAGGTCAGGTAT
1 AATCCAGGTCAAGTAT
12466 TATAATAGAA
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
23 2 0.02
24 79 0.95
25 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAA
Found at i:12389 original size:12 final size:13
Alignment explanation
Indices: 12354--12460 Score: 68
Period size: 12 Copynumber: 8.8 Consensus size: 13
12344 ATCAAAACAT
12354 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* *
12367 TAT-CAGATCAA-
1 AATCCAGGTCAAG
12378 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* *
12391 TAT-CAGATCAA-
1 AATCCAGGTCAAG
12402 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* * *
12415 TATTC-GATC-AG
1 AATCCAGGTCAAG
12426 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* * *
12439 TATCC-GATC-AC
1 AATCCAGGTCAAG
12450 AATCCAGGTCA
1 AATCCAGGTCA
12461 GGTATTATAA
Statistics
Matches: 67, Mismatches: 19, Indels: 16
0.66 0.19 0.16
Matches are distributed among these distances:
11 14 0.21
12 40 0.60
13 13 0.19
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.21
Consensus pattern (13 bp):
AATCCAGGTCAAG
Found at i:15520 original size:26 final size:23
Alignment explanation
Indices: 15468--15528 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
15458 TCGGAGGTCA
15468 GACGACGAGTAGATCAGAGATCG
1 GACGACGAGTAGATCAGAGATCG
*
15491 GACGACGAGTAGATCAGAGGTCG
1 GACGACGAGTAGATCAGAGATCG
15514 GACGACGAGTAGATC
1 GACGACGAGTAGATC
15529 GGAGTTGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.36, T:0.13
Consensus pattern (23 bp):
GACGACGAGTAGATCAGAGATCG
Found at i:17802 original size:12 final size:12
Alignment explanation
Indices: 17778--17892 Score: 61
Period size: 12 Copynumber: 9.7 Consensus size: 12
17768 TAGATATACA
*
17778 AAATTAGAACAG
1 AAATCAGAACAG
*
17790 AAATCAGAGCAG
1 AAATCAGAACAG
* *
17802 AAATCATAATAG
1 AAATCAGAACAG
* * * *
17814 AATTTAGAGCAT
1 AAATCAGAACAG
* *
17826 AAATAATAACAG
1 AAATCAGAACAG
* * *
17838 AATTAAGAGCA-
1 AAATCAGAACAG
* *
17849 AAAACATAACAG
1 AAATCAGAACAG
* *
17861 AATTCAGAGCAG
1 AAATCAGAACAG
*
17873 AAATCAGAACAA
1 AAATCAGAACAG
17885 AAATCAGA
1 AAATCAGA
17893 TAAATATTCA
Statistics
Matches: 71, Mismatches: 31, Indels: 2
0.68 0.30 0.02
Matches are distributed among these distances:
11 6 0.08
12 65 0.92
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.17
Consensus pattern (12 bp):
AAATCAGAACAG
Found at i:17805 original size:24 final size:24
Alignment explanation
Indices: 17785--17892 Score: 119
Period size: 24 Copynumber: 4.5 Consensus size: 24
17775 ACAAAATTAG
*
17785 AACAGAAATCAGAGCAGAAATCAT
1 AACAGAATTCAGAGCAGAAATCAT
* * * *
17809 AATAGAATTTAGAGCATAAATAAT
1 AACAGAATTCAGAGCAGAAATCAT
* *
17833 AACAGAATTAAGAGCA-AAAACAT
1 AACAGAATTCAGAGCAGAAATCAT
*
17856 AACAGAATTCAGAGCAGAAATCAG
1 AACAGAATTCAGAGCAGAAATCAT
* *
17880 AACAAAAATCAGA
1 AACAGAATTCAGA
17893 TAAATATTCA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
23 20 0.29
24 49 0.71
ACGTcount: A:0.56, C:0.13, G:0.15, T:0.16
Consensus pattern (24 bp):
AACAGAATTCAGAGCAGAAATCAT
Found at i:17870 original size:47 final size:48
Alignment explanation
Indices: 17785--17876 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
17775 ACAAAATTAG
* * * * *
17785 AACAGAAATCAGAGCAGAAATCATAATAGAATTTAGAGCATAAATAAT
1 AACAGAAATAAGAGCAGAAAACATAACAGAATTCAGAGCAGAAATAAT
*
17833 AACAGAATTAAGAGCA-AAAACATAACAGAATTCAGAGCAGAAAT
1 AACAGAAATAAGAGCAGAAAACATAACAGAATTCAGAGCAGAAAT
17877 CAGAACAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 24 0.63
48 14 0.37
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.17
Consensus pattern (48 bp):
AACAGAAATAAGAGCAGAAAACATAACAGAATTCAGAGCAGAAATAAT
Found at i:21088 original size:19 final size:19
Alignment explanation
Indices: 21064--21106 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
21054 AGACATCTTC
21064 AGATCTTTATATTGAGCGA
1 AGATCTTTATATTGAGCGA
21083 AGATCTTTATATTGAGCGA
1 AGATCTTTATATTGAGCGA
21102 AGATC
1 AGATC
21107 CTACTGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (19 bp):
AGATCTTTATATTGAGCGA
Found at i:21449 original size:31 final size:31
Alignment explanation
Indices: 21378--21452 Score: 87
Period size: 32 Copynumber: 2.4 Consensus size: 31
21368 GGGGCATACG
* * * *
21378 AGCCTACCCAAGAAAAGTCTCGGGGCCATAA
1 AGCCTACCCAAGAAAAATATCAGGGCCACAA
* *
21409 AGGCCTACCCAAGAAAAATATCAGGGTCGCAA
1 A-GCCTACCCAAGAAAAATATCAGGGCCACAA
21441 AGCCTACCCAAG
1 AGCCTACCCAAG
21453 GGTCGCCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
31 12 0.32
32 25 0.68
ACGTcount: A:0.37, C:0.29, G:0.21, T:0.12
Consensus pattern (31 bp):
AGCCTACCCAAGAAAAATATCAGGGCCACAA
Found at i:25163 original size:5 final size:5
Alignment explanation
Indices: 25153--25232 Score: 70
Period size: 5 Copynumber: 14.8 Consensus size: 5
25143 AACGGTCAAC
* * *
25153 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GATCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
*
25202 GGTCG GGTCG GGTCAAT GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTC
25233 AGACCGGTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 50 0.82
7 11 0.18
ACGTcount: A:0.09, C:0.21, G:0.50, T:0.20
Consensus pattern (5 bp):
GGTCG
Found at i:25174 original size:22 final size:22
Alignment explanation
Indices: 25146--25232 Score: 156
Period size: 22 Copynumber: 4.0 Consensus size: 22
25136 AACGGTCAAC
25146 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
25168 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
25190 GGTCAACGATCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
25212 GGTCAATGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
25233 AGACCGGTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.10, C:0.22, G:0.48, T:0.20
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:25253 original size:19 final size:19
Alignment explanation
Indices: 25231--25328 Score: 101
Period size: 19 Copynumber: 5.1 Consensus size: 19
25221 TCGGGTCGGG
25231 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
25250 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
25269 TC-GAACCGGTTGAAACCGG-
1 TCAG-ACCGG-TCAAACCGGT
*
25288 TCAAACCGGTCAGAACCGGT
1 TCAGACCGGTCA-AACCGGT
* * *
25308 TGAAAACCGGTTAAACCGGT
1 T-CAGACCGGTCAAACCGGT
25328 T
1 T
25329 TCCAGCAGCC
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.04
19 39 0.57
20 17 0.25
21 9 0.13
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.17
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:25259 original size:10 final size:9
Alignment explanation
Indices: 25229--25327 Score: 90
Period size: 9 Copynumber: 10.3 Consensus size: 9
25219 GGTCGGGTCG
*
25229 GGTCAGACC
1 GGTCAAACC
25238 GGTCAAACC
1 GGTCAAACC
*
25247 GGTTCAGACC
1 GG-TCAAACC
25257 GGTCAAACC
1 GGTCAAACC
*
25266 GGTTCGAACC
1 GG-TCAAACC
*
25276 GGTTGAAACC
1 GG-TCAAACC
25286 GGTCAAACC
1 GGTCAAACC
25295 GGTCAGAACC
1 GGTCA-AACC
*
25305 GGTTGAAAACC
1 GG-T-CAAACC
*
25316 GGTTAAACC
1 GGTCAAACC
25325 GGT
1 GGT
25328 TTCCAGCAGC
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
9 37 0.49
10 31 0.41
11 7 0.09
12 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.28, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:25286 original size:29 final size:28
Alignment explanation
Indices: 25230--25327 Score: 124
Period size: 29 Copynumber: 3.4 Consensus size: 28
25220 GTCGGGTCGG
* * *
25230 GTCAGACCGGTCAAACCGGTTCAGACCG
1 GTCAAACCGGTCAAACCGGTTGAAACCG
*
25258 GTCAAACCGGTTCGAACCGGTTGAAACCG
1 GTCAAACCGG-TCAAACCGGTTGAAACCG
25287 GTCAAACCGGTCAGAACCGGTTGAAAACCG
1 GTCAAACCGGTCA-AACCGGTTG-AAACCG
*
25317 GTTAAACCGGT
1 GTCAAACCGGT
25328 TTCCAGCAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 11 0.18
29 34 0.56
30 16 0.26
ACGTcount: A:0.29, C:0.28, G:0.28, T:0.16
Consensus pattern (28 bp):
GTCAAACCGGTCAAACCGGTTGAAACCG
Found at i:32503 original size:5 final size:5
Alignment explanation
Indices: 32493--32572 Score: 70
Period size: 5 Copynumber: 14.8 Consensus size: 5
32483 AACGGTCAAC
* * *
32493 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GATCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
*
32542 GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTC
32573 AGACCGGTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 50 0.82
7 11 0.18
ACGTcount: A:0.09, C:0.23, G:0.50, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:32514 original size:22 final size:22
Alignment explanation
Indices: 32486--32572 Score: 165
Period size: 22 Copynumber: 4.0 Consensus size: 22
32476 AACGGTCAAC
32486 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
32508 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
32530 GGTCAACGATCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
32552 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
32573 AGACCGGTCA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 63 1.00
ACGTcount: A:0.10, C:0.23, G:0.48, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:32587 original size:9 final size:9
Alignment explanation
Indices: 32569--32667 Score: 81
Period size: 9 Copynumber: 10.3 Consensus size: 9
32559 GGTCGGGTCG
*
32569 GGTCAGACC
1 GGTCAAACC
32578 GGTCAAACC
1 GGTCAAACC
*
32587 GGTTCAGACC
1 GG-TCAAACC
32597 GGTCAAACC
1 GGTCAAACC
*
32606 GGTTCGAACC
1 GG-TCAAACC
* *
32616 GGTTGAAACT
1 GG-TCAAACC
32626 GGTCAAACC
1 GGTCAAACC
32635 GGTCAGAACC
1 GGTCA-AACC
*
32645 GGTTGAAAACC
1 GG-T-CAAACC
*
32656 GGTTAAACC
1 GGTCAAACC
32665 GGT
1 GGT
32668 TTCCAGCAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
9 36 0.49
10 30 0.41
11 7 0.09
12 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.17
Consensus pattern (9 bp):
GGTCAAACC
Found at i:32593 original size:19 final size:19
Alignment explanation
Indices: 32571--32668 Score: 92
Period size: 19 Copynumber: 5.1 Consensus size: 19
32561 TCGGGTCGGG
32571 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
32590 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
* *
32609 TC-GAACCGGTTGAAACTGG-
1 TCAG-ACCGG-TCAAACCGGT
*
32628 TCAAACCGGTCAGAACCGGT
1 TCAGACCGGTCA-AACCGGT
* * *
32648 TGAAAACCGGTTAAACCGGT
1 T-CAGACCGGTCAAACCGGT
32668 T
1 T
32669 TCCAGCAGCC
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.05
19 38 0.58
20 16 0.24
21 9 0.14
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.18
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:32646 original size:10 final size:10
Alignment explanation
Indices: 32569--32647 Score: 64
Period size: 10 Copynumber: 8.3 Consensus size: 10
32559 GGTCGGGTCG
32569 GGTCAG-ACC
1 GGTCAGAACC
32578 GGTCA-AACC
1 GGTCAGAACC
32587 GGTTCAG-ACC
1 GG-TCAGAACC
32597 GGTCA-AACC
1 GGTCAGAACC
32606 GGTTC-GAACC
1 GG-TCAGAACC
* *
32616 GGT-TGAAACT
1 GGTCAG-AACC
32626 GGTCA-AACC
1 GGTCAGAACC
32635 GGTCAGAACC
1 GGTCAGAACC
32645 GGT
1 GGT
32648 TGAAAACCGG
Statistics
Matches: 57, Mismatches: 3, Indels: 19
0.72 0.04 0.24
Matches are distributed among these distances:
9 28 0.49
10 29 0.51
ACGTcount: A:0.27, C:0.28, G:0.29, T:0.16
Consensus pattern (10 bp):
GGTCAGAACC
Found at i:40582 original size:18 final size:18
Alignment explanation
Indices: 40559--40593 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
40549 CAGTTAACGA
40559 TCAACGGGTCGAGTCGGG
1 TCAACGGGTCGAGTCGGG
*
40577 TCAACGGGTCGGGTCGG
1 TCAACGGGTCGAGTCGG
40594 ACCGATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.23, G:0.46, T:0.17
Consensus pattern (18 bp):
TCAACGGGTCGAGTCGGG
Found at i:47728 original size:112 final size:112
Alignment explanation
Indices: 47512--47736 Score: 425
Period size: 112 Copynumber: 2.0 Consensus size: 112
47502 ATGATGAAAA
47512 ATCTAATCAAGTAAATAAATATTTGTTATTAGTTTCATGATCATTTACTTTGCACATGAAATTTA
1 ATCTAATCAAGTAAATAAATATTTGTTATTAGTTTCATGATCATTTACTTTGCACATGAAATTTA
*
47577 ATTTTTTTTTAAATTTATATATACATATACAAGTGTTTTTTTATTAT
66 ATTTTTTTTTAAATTTATATACACATATACAAGTGTTTTTTTATTAT
47624 ATCTAATCAAGTAAATAAATATTTGTTATTAGTTTCATGATCATTTACTTTGCACATGAAATTT-
1 ATCTAATCAAGTAAATAAATATTTGTTATTAGTTTCATGATCATTTACTTTGCACATGAAATTTA
*
47688 CTTTTTTTTTAAATTTATATACACATATACAAGTGTTTTTTTATTAT
66 ATTTTTTTTTAAATTTATATACACATATACAAGTGTTTTTTTATTAT
47735 AT
1 AT
47737 AGTTTTACAA
Statistics
Matches: 111, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
111 47 0.42
112 64 0.58
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (112 bp):
ATCTAATCAAGTAAATAAATATTTGTTATTAGTTTCATGATCATTTACTTTGCACATGAAATTTA
ATTTTTTTTTAAATTTATATACACATATACAAGTGTTTTTTTATTAT
Found at i:53639 original size:17 final size:17
Alignment explanation
Indices: 53617--53650 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
53607 ACTTCGACCA
53617 AAAAGTCAAATTTTATG
1 AAAAGTCAAATTTTATG
*
53634 AAAAGTCATATTTTATG
1 AAAAGTCAAATTTTATG
53651 TTTTTCGACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAAGTCAAATTTTATG
Found at i:63028 original size:23 final size:23
Alignment explanation
Indices: 62995--63041 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
62985 CATACATATA
*
62995 GTCATCCCCATGAGCAATGTTAT
1 GTCATCACCATGAGCAATGTTAT
63018 GTCATCACCATGAGCAATGTTAT
1 GTCATCACCATGAGCAATGTTAT
63041 G
1 G
63042 ACCGTTACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (23 bp):
GTCATCACCATGAGCAATGTTAT
Found at i:68722 original size:24 final size:24
Alignment explanation
Indices: 68695--68770 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
68685 TATATCAAAA
68695 ATCAAAACATAAATC-AGGTCAAGT
1 ATCAAAACA-AAATCTAGGTCAAGT
* *
68719 ATCATATCAAAATCTAGGTCAAGT
1 ATCAAAACAAAATCTAGGTCAAGT
* * * * *
68743 ATCATATCAGAATCCAAGTCAAGT
1 ATCAAAACAAAATCTAGGTCAAGT
68767 ATCA
1 ATCA
68771 GATCAGAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.11
24 41 0.89
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (24 bp):
ATCAAAACAAAATCTAGGTCAAGT
Found at i:68775 original size:24 final size:24
Alignment explanation
Indices: 68712--68845 Score: 119
Period size: 24 Copynumber: 5.6 Consensus size: 24
68702 CATAAATCAG
* * * *
68712 GTCAAGTATCATATCAAAATCTAG
1 GTCAAGTATCAGATCAGAATCCAA
*
68736 GTCAAGTATCATATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
68760 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
*
68784 GTC-AGATATCAGATCA-AGATCCAT
1 GTCAAG-TATCAGATCAGA-ATCCAA
* * *
68808 GTCAAGTTTCAGATAAGAATTCAA
1 GTCAAGTATCAGATCAGAATCCAA
* **
68832 ATCAAAAATCAGAT
1 GTCAAGTATCAGAT
68846 AAATATTCAT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.03
24 87 0.94
25 3 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:77368 original size:25 final size:27
Alignment explanation
Indices: 77333--77382 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
77323 AACAAAAAGA
*
77333 AAACTTTGATA-C-TAGCGATATTTAT
1 AAACTTGGATATCATAGCGATATTTAT
*
77358 AAACTTGGATATCATAGTGATATTT
1 AAACTTGGATATCATAGCGATATTT
77383 CTATTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 1 0.05
27 10 0.48
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (27 bp):
AAACTTGGATATCATAGCGATATTTAT
Found at i:77563 original size:21 final size:20
Alignment explanation
Indices: 77524--77563 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
77514 TCAAAATCCA
*
77524 ATATAAATGATTTTATATTT
1 ATATAAATGATTATATATTT
*
77544 ATATAAATTTATTATATATT
1 ATATAAA-TGATTATATATT
77564 AGGTGGTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
ATATAAATGATTATATATTT
Found at i:80820 original size:24 final size:25
Alignment explanation
Indices: 80793--80911 Score: 115
Period size: 24 Copynumber: 5.0 Consensus size: 25
80783 ATCAAAACAT
*
80793 AAAT-CAGGTCAAGTATCATATTAG
1 AAATCCAGGTCAAGTATCATATCAG
* *
80817 AAAT-TAGGTCAAGTAACATATCAG
1 AAATCCAGGTCAAGTATCATATCAG
* *
80841 -AATCCAAGTCAAGTATCAGATCA-
1 AAATCCAGGTCAAGTATCATATCAG
*
80864 AAATCCATGTC-AGATATCATATCAG
1 AAATCCAGGTCAAG-TATCATATCAG
* *
80889 -AATCCATGTCAAGTATCAGATCA
1 AAATCCAGGTCAAGTATCATATCA
80912 TAATTCAAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.06
24 73 0.91
25 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (25 bp):
AAATCCAGGTCAAGTATCATATCAG
Found at i:80858 original size:48 final size:48
Alignment explanation
Indices: 80800--80911 Score: 138
Period size: 48 Copynumber: 2.3 Consensus size: 48
80790 CATAAATCAG
* * *
80800 GTCAAGTATCATATTAGAAAT-TAGGTCA-AGTAACATATCAGAATCCAA
1 GTCAAGTATCAGATCA-AAATCCAGGTCAGA-TAACATATCAGAATCCAA
* * *
80848 GTCAAGTATCAGATCAAAATCCATGTCAGATATCATATCAGAATCCAT
1 GTCAAGTATCAGATCAAAATCCAGGTCAGATAACATATCAGAATCCAA
80896 GTCAAGTATCAGATCA
1 GTCAAGTATCAGATCA
80912 TAATTCAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 4 0.07
48 51 0.91
49 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (48 bp):
GTCAAGTATCAGATCAAAATCCAGGTCAGATAACATATCAGAATCCAA
Found at i:83362 original size:18 final size:18
Alignment explanation
Indices: 83316--83363 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
83306 AACAGCTCAA
* *
83316 CGGGTCGGGTCAATGGGT
1 CGGGTCGGGTTAACGGGT
83334 CGGGTCGGGTTAACGGGT
1 CGGGTCGGGTTAACGGGT
83352 CGGGTCGGGTTA
1 CGGGTCGGGTTA
83364 TGACCGGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.10, C:0.17, G:0.50, T:0.23
Consensus pattern (18 bp):
CGGGTCGGGTTAACGGGT
Found at i:85475 original size:24 final size:24
Alignment explanation
Indices: 85448--85523 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
85438 TATATCAAAA
* *
85448 ATCAAAACATAAATCAGTTCAAGT
1 ATCAAAACAGAAATCAGGTCAAGT
* *
85472 ATCATATCAGAAATCAGGTCAAGT
1 ATCAAAACAGAAATCAGGTCAAGT
* * * *
85496 AACAGATCAG-AATCCAAGTCAAGT
1 ATCAAAACAGAAAT-CAGGTCAAGT
85520 ATCA
1 ATCA
85524 GATCAAAATC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 3 0.07
24 40 0.93
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (24 bp):
ATCAAAACAGAAATCAGGTCAAGT
Found at i:85525 original size:24 final size:24
Alignment explanation
Indices: 85466--85580 Score: 144
Period size: 24 Copynumber: 4.8 Consensus size: 24
85456 ATAAATCAGT
* *
85466 TCAAGTATCATATCAGAAAT-CAGG
1 TCAAGTATCAGATCAG-AATCCATG
* *
85490 TCAAGTAACAGATCAGAATCCAAG
1 TCAAGTATCAGATCAGAATCCATG
*
85514 TCAAGTATCAGATCAAAATCCATG
1 TCAAGTATCAGATCAGAATCCATG
*
85538 TC-AGATATCATATCAGAATCCATG
1 TCAAG-TATCAGATCAGAATCCATG
85562 TCAAGTATCAGATCAGAAT
1 TCAAGTATCAGATCAGAAT
85581 TCAAATCGAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.06
24 72 0.91
25 2 0.03
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (24 bp):
TCAAGTATCAGATCAGAATCCATG
Found at i:85596 original size:72 final size:71
Alignment explanation
Indices: 85471--85603 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 71
85461 TCAGTTCAAG
* *
85471 TATCATATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCCA
1 TATCATATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAATCAAGAATCAGAT-AAAATCCA
85536 TGTCAGA
65 TGTCAGA
* * *
85543 TATCATATCAG-AATCCATGTCAAGTATCAGATCAGAATTCAAATCGAA-AATCAGATAAAAT
1 TATCATATCAGAAAT-CAGGTCAAGTAACAGATCAGAATCCAAATC-AAGAATCAGATAAAAT
85604 ATTCATGTGA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
71 8 0.15
72 44 0.81
73 2 0.04
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (71 bp):
TATCATATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAATCAAGAATCAGATAAAATCCAT
GTCAGA
Found at i:86815 original size:18 final size:19
Alignment explanation
Indices: 86775--86815 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
86765 CTGCCATCCG
*
86775 GTCTTATTATTTAATTCAA
1 GTCTTATCATTTAATTCAA
*
86794 -TCTTATCATTTACTT-AA
1 GTCTTATCATTTAATTCAA
86811 GTCTT
1 GTCTT
86816 GTCGAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.54
Consensus pattern (19 bp):
GTCTTATCATTTAATTCAA
Found at i:88089 original size:13 final size:13
Alignment explanation
Indices: 88067--88097 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
88057 CGCCGGTCAA
*
88067 CGGGTCAACGGGT
1 CGGGTAAACGGGT
88080 CGGGTAAACGGGT
1 CGGGTAAACGGGT
88093 CGGGT
1 CGGGT
88098 CGGGTCGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.19, G:0.48, T:0.16
Consensus pattern (13 bp):
CGGGTAAACGGGT
Found at i:90210 original size:25 final size:27
Alignment explanation
Indices: 90175--90224 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
90165 AAAAAAAAGA
*
90175 AAACTTTGATA-C-TAGCGATATTTAT
1 AAACTTGGATATCATAGCGATATTTAT
90200 AAACTTGGATATCATAGCGATATTT
1 AAACTTGGATATCATAGCGATATTT
90225 CTATTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 1 0.05
27 11 0.50
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (27 bp):
AAACTTGGATATCATAGCGATATTTAT
Found at i:94278 original size:25 final size:27
Alignment explanation
Indices: 94243--94292 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
94233 GAAAAAAAGA
*
94243 AAACTTTGATA-C-TAGCGATATTTAT
1 AAACTTGGATATCATAGCGATATTTAT
94268 AAACTTGGATATCATAGCGATATTT
1 AAACTTGGATATCATAGCGATATTT
94293 CTAATTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 1 0.05
27 11 0.50
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (27 bp):
AAACTTGGATATCATAGCGATATTTAT
Found at i:94473 original size:21 final size:20
Alignment explanation
Indices: 94434--94473 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
94424 TCAAAATCCG
*
94434 ATATAAATGATTTTATATTT
1 ATATAAATGATTATATATTT
*
94454 ATATAAATTTATTATATATT
1 ATATAAA-TGATTATATATT
94474 AGGTGGTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
ATATAAATGATTATATATTT
Found at i:106710 original size:165 final size:166
Alignment explanation
Indices: 106376--106708 Score: 643
Period size: 166 Copynumber: 2.0 Consensus size: 166
106366 TTCATAAGGT
106376 AAAT-TTCGAGGACGAAAGTTCTTGTAGAGGGGGAGAATTGTAACAACCTAGAAATTTGAAAATA
1 AAATCTTCGAGGACGAAAGTTCTTGTAGAGGGGGAGAATTGTAACAACCTAGAAATTTGAAAATA
106440 TTATTTAAATGAAATTTGAGGTTTTAATTTTGTAAATTGGTAAATCTTGGGAACTAAATTGAAAG
66 TTATTTAAATGAAATTTGAGGTTTTAATTTTGTAAATTGGTAAATCTTGGGAACTAAATTGAAAG
106505 TTTTTAAACTTGTAGCCTGTTTTAGAGTTAAAAAAA
131 TTTTTAAACTTGTAGCCTGTTTTAGAGTTAAAAAAA
106541 AAATCTTCGAGGACGAAAGTTCTTGTAGAGGGGGAGAATTGTAACAACCTAGAAATTTG-AAATA
1 AAATCTTCGAGGACGAAAGTTCTTGTAGAGGGGGAGAATTGTAACAACCTAGAAATTTGAAAATA
106605 TTATTTAAATGAAATTTGAGGTTTTAATTTTGTAAATTGGTAAATCTTGGGAACTAAATTGAAAG
66 TTATTTAAATGAAATTTGAGGTTTTAATTTTGTAAATTGGTAAATCTTGGGAACTAAATTGAAAG
106670 TTTTTAAAACTTGTAGCCTGTTTTAGAGTTAAAAAAA
131 TTTTT-AAACTTGTAGCCTGTTTTAGAGTTAAAAAAA
106707 AA
1 AA
106709 TCCAGGGACC
Statistics
Matches: 166, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
165 79 0.48
166 87 0.52
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (166 bp):
AAATCTTCGAGGACGAAAGTTCTTGTAGAGGGGGAGAATTGTAACAACCTAGAAATTTGAAAATA
TTATTTAAATGAAATTTGAGGTTTTAATTTTGTAAATTGGTAAATCTTGGGAACTAAATTGAAAG
TTTTTAAACTTGTAGCCTGTTTTAGAGTTAAAAAAA
Found at i:107252 original size:13 final size:13
Alignment explanation
Indices: 107230--107259 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
107220 GGGTTAACCC
*
107230 GACCCGACCCGTT
1 GACCCAACCCGTT
107243 GACCCAACCCGTT
1 GACCCAACCCGTT
107256 GACC
1 GACC
107260 GTTGACCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.47, G:0.20, T:0.13
Consensus pattern (13 bp):
GACCCAACCCGTT
Found at i:120898 original size:20 final size:20
Alignment explanation
Indices: 120873--120921 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
120863 AATCAACACG
120873 CATTCAAGTGATATCTATGC
1 CATTCAAGTGATATCTATGC
120893 CATTCAAGTGATATCTATGC
1 CATTCAAGTGATATCTATGC
120913 CATTCAAGT
1 CATTCAAGT
120922 ACTGACATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATTCAAGTGATATCTATGC
Found at i:127396 original size:28 final size:29
Alignment explanation
Indices: 127333--127577 Score: 209
Period size: 29 Copynumber: 8.6 Consensus size: 29
127323 CACATTCGAA
* * * *
127333 AATTCTCAAAATGTAATATTTTTCAAAAT
1 AATTCCCAGAATGTCATCTTTTTCAAAAT
* * *
127362 AATTTCCAGAATGTGATTTTTTTCAAAAT
1 AATTCCCAGAATGTCATCTTTTTCAAAAT
* *
127391 AATTCCCATATTGTCA--TTTTTCAAAAT
1 AATTCCCAGAATGTCATCTTTTTCAAAAT
* * * *
127418 AATTACTAGAATATCA-CTTTTTTAAAAT
1 AATTCCCAGAATGTCATCTTTTTCAAAAT
*
127446 AATTCCCAGAATATCATCTTTTTCACAAA-
1 AATTCCCAGAATGTCATCTTTTTCA-AAAT
127475 AATTCCCAGAATG-CTATCTTTTTCACAAA-
1 AATTCCCAGAATGTC-ATCTTTTTCA-AAAT
* *
127504 AATTCCCAGAATGTCACCTATTTCATAAA-
1 AATTCCCAGAATGTCATCTTTTTCA-AAAT
* *
127533 AATTCCCAGAATGTCACCTATTTCATAAA-
1 AATTCCCAGAATGTCATCTTTTTCA-AAAT
* *
127562 AATTCACAAAATGTCA
1 AATTCCCAGAATGTCA
127578 CTGGGTCGGT
Statistics
Matches: 187, Mismatches: 24, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
27 22 0.12
28 25 0.13
29 136 0.73
30 4 0.02
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (29 bp):
AATTCCCAGAATGTCATCTTTTTCAAAAT
Done.