Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007489.1 Hibiscus syriacus cultivar Beakdansim tig00020681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78348

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1127--1172
21
2.2
21
96
0
83
60
8
13
17
1.56
12433--12533
36
2.7
37
86
4
132
31
41
6
19
1.78
35384--35493
31
3.4
31
72
16
114
20
20
21
36
1.95
45036--45090
15
3.7
15
95
0
92
60
12
20
7
1.56
49192--49270
2
39.5
2
94
0
140
48
0
0
51
1.00
49330--49625
85
3.5
84
88
3
432
33
16
20
29
1.94
49604--49648
13
3.5
13
84
0
54
33
20
20
26
1.97
49330--49658
85
3.9
84
87
3
416
33
16
20
30
1.94
54079--54140
25
2.6
24
82
12
74
69
6
6
17
1.32
57411--57443
5
7.0
5
86
13
52
81
0
0
18
0.68
66883--66949
30
2.2
30
89
0
98
47
11
11
28
1.76
71492--71598
41
2.6
40
89
2
151
32
15
15
35
1.90
71520--71727
41
5.1
40
76
10
102
34
12
16
37
1.86
71535--71826
123
2.4
123
82
1
298
33
11
17
37
1.86
71584--71828
41
6.0
41
78
4
219
33
10
17
38
1.85
71573--71828
123
2.1
123
85
1
343
33
10
17
38
1.84
71761--71838
41
1.9
41
81
0
93
30
8
24
35
1.86
75643--75793
58
2.6
58
93
3
248
29
16
13
40
1.87

Tables:   1

The End!