genome.fa.s749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000749.1 Hibiscus syriacus cultivar Beakdansim tig00001442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112390

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4031--4068	18	2.1	19	90	5	60	44	21	7	26	1.79
8927--8998	24	3.0	24	85	0	99	50	18	12	19	1.78
8929--8998	12	5.8	12	70	6	52	50	18	12	18	1.78
8927--9035	48	2.3	47	82	6	121	47	16	15	20	1.82
8927--9035	24	4.5	25	76	11	93	47	16	15	20	1.82
12267--12330	2	32.0	2	100	0	128	50	0	0	50	1.00
12641--12674	17	1.9	18	88	5	52	52	0	2	44	1.16
16279--16602	138	2.4	137	76	7	327	23	24	16	35	1.94
16707--16740	17	2.0	17	94	0	59	38	11	11	38	1.79
23773--23808	2	18.0	2	100	0	72	50	0	0	50	1.00
24218--24316	21	5.0	21	76	13	102	25	21	28	25	1.99
25378--25418	21	2.0	21	85	0	55	29	2	24	43	1.67
25426--25459	17	2.0	17	88	0	50	29	0	20	50	1.49
26260--26577	144	2.2	147	79	9	321	24	21	19	34	1.96
28798--28831	17	2.0	17	100	0	68	23	17	29	29	1.97
29190--29274	38	2.2	38	93	0	143	31	12	23	31	1.92
29620--29698	40	2.0	40	89	0	122	60	16	7	15	1.56
31559--31589	2	16.0	2	93	6	55	48	0	0	51	1.00
32222--32262	21	2.0	21	85	0	55	12	46	17	24	1.82
34487--34518	13	2.4	14	85	15	50	28	0	6	65	1.16
35258--35351	41	2.3	41	90	0	143	17	31	30	20	1.95
38250--38321	26	3.0	24	69	21	60	63	4	5	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40317--40504	96	2.0	96	96	0	349	45	11	8	34	1.70
40572--40612	18	2.3	18	91	4	66	63	0	4	31	1.15
43004--43214	101	2.1	103	83	8	263	29	18	13	37	1.90
44863--44902	20	2.0	20	100	0	80	50	5	10	35	1.58
47139--47168	9	3.3	9	100	0	60	23	0	0	76	0.78
47139--47177	18	2.2	18	85	0	51	20	5	2	71	1.17
47808--47866	19	3.0	21	73	12	52	44	0	5	50	1.24
47826--47866	18	2.2	19	86	4	57	43	0	0	56	0.99
56251--56290	21	1.9	21	94	0	71	32	15	10	42	1.79
59138--59711	6	96.0	6	96	3	1070	50	16	0	33	1.46
60641--60672	16	1.9	17	93	6	57	46	15	6	31	1.71
60905--60968	31	2.1	31	93	0	110	39	15	6	39	1.73
67438--67492	24	2.3	24	80	0	65	21	14	16	47	1.82
70661--70718	19	3.0	20	78	14	52	31	5	0	63	1.16
77051--77120	11	6.3	11	79	9	70	12	2	17	67	1.35
77053--77105	23	2.4	22	87	3	79	13	1	15	69	1.27
77051--77120	34	2.1	33	94	2	122	12	2	17	67	1.35
77249--77300	11	4.6	11	80	2	50	17	1	15	65	1.36
77268--77427	74	2.2	74	94	0	275	21	3	19	55	1.58
77316--77376	22	2.8	23	80	9	67	16	4	21	57	1.58
77051--77524	171	2.7	174	89	4	675	20	4	17	57	1.56
81120--81182	29	2.2	29	85	5	83	17	9	23	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81142--81233	41	2.2	41	90	3	141	19	8	18	53	1.70
81624--81735	35	3.2	35	81	5	136	38	0	19	41	1.58
88273--88321	24	2.0	24	88	0	71	26	14	16	42	1.86
90031--90061	14	2.1	15	94	5	55	45	0	0	54	0.99
96280--96317	19	2.0	19	85	10	51	18	10	15	55	1.68
97919--97944	5	5.2	5	100	0	52	23	57	19	0	1.40
103071--103168	23	4.3	23	94	0	169	17	21	20	40	1.91
106782--106878	16	5.9	16	66	4	59	40	31	13	14	1.85
106778--106878	33	3.1	32	81	4	121	40	31	12	14	1.84
112105--112246	57	2.5	57	88	5	200	33	19	13	33	1.90

Tables:   1

The End!