genome.fa.s7492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007492.1 Hibiscus syriacus cultivar Beakdansim tig00020714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152177

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418--2176	286	2.7	285	85	3	949	47	6	13	32	1.68
1406--2176	288	2.7	285	84	3	971	47	6	13	32	1.68
3617--3939	125	2.5	126	84	4	389	40	14	12	32	1.84
4975--5032	20	2.9	21	87	7	77	18	29	32	18	1.96
8540--8581	21	2.0	21	100	0	84	14	28	42	14	1.84
9121--9191	28	2.5	28	80	17	85	61	8	8	21	1.50
10673--11226	135	4.1	134	82	4	639	32	15	21	30	1.94
10647--11222	270	2.1	270	84	3	730	32	15	20	31	1.94
21707--22045	130	2.6	131	84	6	420	38	14	11	35	1.82
23751--23803	3	17.7	3	100	0	106	33	32	0	33	1.58
23803--23868	3	22.3	3	96	3	125	66	0	0	33	0.92
25442--25479	20	1.9	20	88	0	58	34	18	26	21	1.96
31546--31613	19	3.5	19	71	28	54	35	16	23	25	1.95
33846--33874	14	2.1	14	100	0	58	44	13	13	27	1.82
38387--38436	21	2.4	21	96	0	91	18	12	30	40	1.86
38487--38529	21	2.1	20	86	4	59	20	20	23	34	1.96
41956--41998	21	2.1	20	86	4	59	23	20	20	34	1.96
48960--49112	64	2.4	64	89	6	231	30	20	18	30	1.96
55162--55199	19	2.0	20	84	5	51	42	23	7	26	1.81
56882--56930	21	2.3	21	96	0	89	14	36	22	26	1.92
56970--57009	21	1.9	21	94	0	71	25	17	30	27	1.97
58567--58604	20	1.9	20	94	0	67	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58588--58729	64	2.2	63	85	9	182	30	23	16	28	1.97
61455--61540	3	29.0	3	83	6	113	33	3	1	61	1.20
62784--62842	21	2.9	23	81	16	60	32	0	3	64	1.10
64267--64358	46	2.0	47	91	2	150	36	13	19	30	1.90
68127--68176	2	25.0	2	91	0	82	46	0	4	50	1.20
68478--68515	10	3.8	10	89	10	60	86	0	13	0	0.56
68478--68515	19	2.0	20	94	5	69	86	0	13	0	0.56
68481--68506	9	2.9	9	100	0	52	92	0	7	0	0.39
72738--72838	22	4.6	22	95	2	168	33	15	12	37	1.86
73509--74504	45	22.2	45	92	1	1649	23	23	18	34	1.97
73609--73683	25	3.2	25	61	24	63	22	25	17	34	1.96
74695--74763	3	22.7	3	88	2	102	30	4	1	63	1.22
82683--82721	21	1.9	20	84	5	51	35	20	15	28	1.93
92151--92204	21	2.6	21	96	0	99	25	11	22	40	1.87
95218--95263	21	2.2	21	88	0	65	56	4	0	39	1.19
95368--95412	19	2.3	20	78	17	51	31	6	0	62	1.21
98261--98509	46	5.5	46	88	2	362	31	20	6	41	1.78
98596--98671	40	1.9	40	86	0	107	22	26	26	25	2.00
102475--102556	6	14.0	6	86	13	118	0	15	0	84	0.63
102466--102553	1	88.0	1	70	0	59	0	14	0	85	0.60
104934--105002	15	4.3	16	78	10	70	17	27	31	23	1.97
104934--105002	32	2.2	32	89	0	102	17	27	31	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105886--106135	46	5.5	45	89	3	358	31	20	8	40	1.82
108939--108993	27	2.0	27	100	0	110	36	10	10	41	1.75
109926--110317	194	2.0	193	81	1	444	37	12	11	38	1.80
115515--115576	32	1.9	33	93	3	108	16	14	9	59	1.60
115858--115906	13	3.8	13	83	0	62	26	22	18	32	1.97
117590--117669	2	40.0	2	95	5	144	50	0	1	48	1.08
120660--120694	8	4.4	8	92	0	61	74	0	25	0	0.82
120983--121028	15	3.1	14	87	12	65	56	2	2	39	1.24
125292--125380	39	2.5	33	75	19	97	31	14	20	33	1.93
125308--125714	39	10.9	38	76	6	325	32	14	15	37	1.88
125245--125726	146	3.3	145	86	3	639	32	13	15	37	1.87
125252--125726	38	13.0	36	74	10	234	32	13	15	38	1.87
125219--125726	74	6.9	74	77	8	520	32	14	15	37	1.88
126776--127035	59	4.4	59	81	0	288	28	25	13	31	1.94
130338--130383	24	1.9	24	95	0	83	17	23	17	41	1.90
130376--130421	24	1.9	24	90	0	74	0	60	2	36	1.09
130421--130456	2	18.0	2	100	0	72	50	0	0	50	1.00
130907--130973	24	2.8	23	82	13	75	44	0	1	53	1.09
132857--132892	2	18.0	2	100	0	72	50	0	0	50	1.00
140104--140143	2	20.0	2	100	0	80	50	0	0	50	1.00
147426--147476	26	2.0	26	92	0	84	19	15	27	37	1.92
150713--150785	35	2.1	35	87	5	105	21	26	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151064--151103	20	2.0	20	90	0	62	22	27	17	32	1.96
151134--151167	18	1.9	18	88	5	52	17	17	41	23	1.90
151194--151252	21	2.8	21	92	5	93	20	22	38	18	1.93

Tables:   1

The End!