genome.fa.s7493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007493.1 Hibiscus syriacus cultivar Beakdansim tig00020724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94017

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7032--7416	182	2.1	183	90	4	618	44	8	3	42	1.53
7775--7891	38	2.8	41	76	12	114	47	0	0	50	1.12
7855--7887	9	3.8	9	84	8	50	36	0	0	63	0.95
9987--10060	24	3.1	26	77	14	88	48	16	16	18	1.81
9993--10060	12	5.8	12	70	11	52	48	17	16	17	1.81
9998--10083	24	3.7	24	81	9	90	45	16	15	23	1.85
12515--12544	10	3.0	10	95	0	51	23	20	20	36	1.95
14603--14674	24	3.0	24	85	0	99	50	16	13	19	1.79
14618--14674	12	4.8	12	72	8	53	47	17	15	19	1.83
14618--14697	24	3.3	24	83	0	88	46	16	15	22	1.84
16856--16899	22	2.0	23	81	4	54	29	6	43	20	1.78
18633--18670	20	1.9	20	88	0	58	28	0	23	47	1.52
25917--26179	55	4.8	54	73	10	194	26	23	17	31	1.97
25946--26133	56	3.4	55	75	13	172	22	25	19	32	1.97
26555--27904	37	36.2	37	75	10	967	22	18	22	35	1.96
26545--27861	153	8.8	149	75	12	867	23	18	22	35	1.96
26555--27787	190	6.6	188	80	8	1133	23	18	22	35	1.96
26704--27894	299	4.0	298	79	10	1158	23	18	22	35	1.96
26941--27894	263	3.7	261	87	4	1249	22	18	22	35	1.95
26711--27896	72	16.0	72	76	10	807	23	18	22	35	1.96
29127--29167	2	21.0	2	95	5	75	48	0	0	51	1.00
31520--31591	21	3.4	21	90	5	101	16	15	22	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38780--39167	182	2.1	183	91	3	622	44	8	3	43	1.52
39535--39657	40	2.9	41	74	17	110	48	0	0	49	1.12
39620--39652	9	3.8	9	84	8	50	36	0	0	63	0.95
41782--41853	24	3.0	24	81	0	90	50	16	12	20	1.78
41780--41890	48	2.3	48	81	9	120	48	15	12	23	1.79
41783--41888	24	4.4	24	69	15	76	48	16	12	23	1.79
44327--44356	10	3.0	10	95	0	51	23	20	20	36	1.95
44369--44403	18	1.9	18	94	0	61	17	17	48	17	1.81
46448--46515	24	2.8	24	84	0	82	52	16	11	19	1.73
46465--46542	24	3.2	24	83	0	84	46	16	14	23	1.83
49342--49385	22	2.0	23	81	4	54	29	9	43	18	1.80
51118--51156	19	2.1	19	90	0	60	30	0	25	43	1.55
51832--53713	980	1.9	985	82	6	2321	34	22	12	30	1.91
55459--55563	56	1.9	54	86	3	147	25	25	17	31	1.97
55433--55608	54	3.2	55	74	13	141	25	23	18	32	1.97
55983--57329	37	36.2	37	75	10	940	23	18	22	35	1.96
55983--57329	72	18.1	73	75	11	855	23	18	22	35	1.96
56139--57176	297	3.5	299	81	10	1047	23	18	22	35	1.96
58551--58594	2	22.0	2	100	0	88	50	0	0	50	1.00
60948--61002	21	2.6	21	97	0	101	16	14	20	49	1.80
60948--61019	21	3.4	21	88	5	74	16	16	22	44	1.86
68221--68591	181	2.0	181	92	2	611	44	9	3	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69040--69072	9	3.8	9	84	8	50	36	0	0	63	0.95
71189--71260	24	3.0	24	81	0	90	50	16	12	20	1.78
71187--71297	48	2.3	48	81	9	120	48	15	12	23	1.79
71190--71295	24	4.4	24	69	15	76	48	16	12	23	1.79
73725--73754	10	3.0	10	95	0	51	23	20	20	36	1.95
75821--75892	24	3.0	24	85	0	99	50	16	13	19	1.79
75836--75892	12	4.8	12	72	8	53	47	17	15	19	1.83
75836--75915	24	3.3	24	83	0	88	46	16	15	22	1.84
78075--78118	22	2.0	23	81	4	54	29	6	43	20	1.78
79855--79892	20	1.9	20	88	0	58	28	0	23	47	1.52
87113--87374	55	4.8	55	71	12	171	26	23	17	32	1.97
87223--87328	56	1.9	55	90	1	167	24	27	16	31	1.97
87749--89095	37	36.2	37	75	10	963	22	19	22	35	1.96
87898--89085	299	4.0	297	79	10	1156	23	18	22	35	1.96
88133--89085	262	3.7	261	86	4	1222	22	18	22	35	1.96
91145--91200	2	29.0	2	92	7	98	50	0	0	50	1.00
93527--93572	21	2.2	21	96	0	83	17	10	21	50	1.77

Tables:   1

The End!