genome.fa.s7496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007496.1 Hibiscus syriacus cultivar Beakdansim tig00020741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65440

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717--784	18	3.7	18	75	7	73	25	29	23	22	1.99
5847--5916	18	3.7	18	78	14	77	24	32	22	20	1.97
9670--9703	18	1.9	18	88	5	52	14	26	32	26	1.95
12653--12683	14	2.3	14	94	5	55	9	25	3	61	1.42
18636--18786	42	3.6	42	72	16	125	72	2	2	22	1.10
18640--18788	44	3.4	43	76	7	113	71	2	2	22	1.11
33650--33723	3	24.3	3	97	2	139	33	0	0	66	0.92
40100--40152	21	2.5	21	78	0	61	20	24	18	35	1.95
40142--40276	41	3.3	40	90	2	180	40	20	20	20	1.92
40142--40276	20	6.7	20	79	3	162	40	20	20	20	1.92
40831--40921	20	4.6	20	82	4	103	53	19	14	12	1.71
40953--41074	33	3.5	33	84	8	154	11	23	18	45	1.82
40948--41074	20	7.1	19	70	20	103	11	24	18	44	1.83
42925--42979	14	3.6	14	73	21	56	9	23	21	45	1.80
42937--43060	19	6.6	19	78	12	132	10	21	20	46	1.81
42925--43036	33	3.2	33	83	14	161	8	23	21	46	1.79
42930--43060	39	3.5	37	85	11	162	10	22	19	47	1.80
43461--43549	42	2.1	42	80	0	106	22	38	14	24	1.92
43519--43579	21	3.0	20	73	7	59	24	36	18	21	1.95
44930--44965	14	2.6	14	95	0	63	33	0	22	44	1.53
45072--45137	19	3.5	19	83	8	89	48	19	19	12	1.80
45126--45156	14	2.3	13	94	5	53	54	25	12	6	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080--45166	33	2.4	36	81	9	90	48	22	18	10	1.78
45166--45259	33	2.8	33	91	0	152	13	24	18	43	1.86
45201--45279	19	4.4	19	72	16	69	15	22	18	43	1.88
45232--45325	20	4.7	20	72	13	68	21	20	23	35	1.96
47780--47839	24	2.5	24	83	0	84	38	18	18	25	1.93
48687--48955	20	13.3	21	83	4	245	32	18	20	27	1.96
48697--48954	61	4.2	60	82	4	227	33	18	20	27	1.96
48697--48935	41	5.9	41	85	4	222	33	19	19	27	1.96
48912--48954	21	2.0	21	86	4	59	37	16	25	20	1.93
49583--49639	18	3.2	18	94	0	96	22	50	15	10	1.74
52472--52593	31	3.9	31	74	6	95	18	27	27	27	1.98
52472--52595	63	2.0	63	82	3	151	17	26	28	27	1.98
58694--58848	57	2.8	54	79	5	202	43	9	9	38	1.69
58694--58857	54	3.0	54	79	5	202	43	8	9	38	1.67
63709--63761	27	1.9	28	84	3	72	39	3	18	37	1.69
65131--65171	19	2.2	19	100	0	82	31	29	17	21	1.96

Tables:   1

The End!