genome.fa.s7498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007498.1 Hibiscus syriacus cultivar Beakdansim tig00020752_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89169

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5430--5566	68	2.0	68	84	8	179	29	14	22	32	1.94
9751--9791	21	1.9	22	90	5	66	39	19	0	41	1.52
9946--10085	70	2.0	70	100	0	280	30	24	12	32	1.93
12356--12395	19	2.0	21	90	9	66	40	20	10	30	1.85
13430--13476	20	2.3	20	85	7	60	34	0	19	46	1.50
22530--22556	11	2.5	11	100	0	54	74	0	14	11	1.08
23992--24069	24	3.2	24	77	1	66	19	25	17	37	1.94
24118--24166	24	2.0	24	84	7	64	16	18	20	44	1.86
42702--42765	30	2.1	30	91	0	101	43	15	10	29	1.81
55371--55410	20	2.0	21	90	5	64	32	0	25	42	1.55
60132--60173	21	2.0	21	86	9	59	4	26	0	69	1.08
60630--60667	20	1.9	20	88	0	58	36	10	18	34	1.85
61862--61963	32	3.2	32	87	0	150	33	13	16	36	1.88
64267--64555	45	6.4	44	85	2	308	26	21	12	39	1.89
64267--64555	90	3.2	89	83	3	346	26	21	12	39	1.89
64463--64535	24	3.2	24	67	25	75	30	21	12	35	1.90
64267--64555	135	2.1	136	82	6	363	26	21	12	39	1.89
64487--64555	21	3.1	21	65	25	52	26	23	13	37	1.91
64955--65214	53	5.2	52	67	23	175	25	22	12	39	1.89
64970--65137	54	3.3	53	72	18	185	24	21	11	42	1.85
64936--65234	97	3.1	97	91	0	449	25	22	11	40	1.87
77119--77209	46	2.0	46	82	0	110	26	19	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77148--77246	45	2.2	46	85	1	128	28	21	13	37	1.91
77254--77410	45	3.5	45	81	6	201	28	22	12	35	1.91
77171--77405	80	2.8	83	80	8	237	28	21	12	36	1.91
77134--77369	125	1.9	126	81	6	291	28	21	12	37	1.90
77843--78115	97	2.8	97	86	0	384	26	22	10	41	1.85
85292--85371	29	2.8	29	78	0	88	46	15	15	23	1.83
85280--85431	29	5.3	28	72	5	81	43	15	14	26	1.85
85483--85508	2	13.0	2	100	0	52	50	0	0	50	1.00
85877--85902	13	2.0	13	100	0	52	61	15	15	7	1.55

Tables:   1

The End!