genome.fa.s7499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007499.1 Hibiscus syriacus cultivar Beakdansim tig00020782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100444

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2901--2984	13	7.2	12	71	23	56	28	3	38	29	1.74
2883--2985	36	2.9	36	90	7	167	28	4	36	30	1.78
4647--4675	12	2.5	12	94	5	51	34	6	0	58	1.25
5062--5107	15	2.9	16	72	18	51	32	6	8	52	1.58
6367--6402	19	1.9	20	88	11	58	22	11	0	66	1.22
6615--6639	11	2.3	11	100	0	50	76	8	16	0	1.02
6668--6726	19	3.1	19	72	20	59	72	1	23	1	1.02
17622--17671	14	3.9	13	73	21	52	78	2	20	0	0.86
17611--17671	19	3.3	18	82	17	81	78	1	19	0	0.83
17611--17671	10	6.2	10	77	22	51	78	1	19	0	0.83
26145--26177	6	5.3	6	92	7	57	3	0	15	81	0.80
28407--28526	35	3.4	35	84	2	152	26	35	3	34	1.73
28894--28947	16	3.4	16	74	7	56	81	1	14	1	0.86
32717--32745	15	2.0	15	93	6	51	75	3	20	0	0.94
35472--35501	13	2.4	13	94	5	53	43	0	30	26	1.55
50466--50509	23	2.0	21	82	13	52	31	18	15	34	1.92
51783--51887	36	2.9	36	86	5	142	33	4	33	28	1.78
57535--57620	11	7.2	12	74	22	67	29	2	37	31	1.70
57518--57602	11	7.2	12	70	26	65	29	2	36	31	1.70
57517--57621	36	2.9	36	92	1	176	28	3	36	31	1.75
61262--61297	13	2.7	13	86	4	54	80	0	19	0	0.71
65651--65740	36	2.5	37	91	5	141	30	35	3	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65724--65792	33	2.1	33	83	5	86	28	36	1	33	1.67
70072--70171	33	2.9	36	82	13	129	31	35	5	29	1.79
73144--73192	11	4.2	12	76	7	57	73	4	10	12	1.22
73144--73191	23	2.1	23	88	3	71	72	4	10	12	1.24
79079--79130	21	2.6	20	87	6	70	36	15	5	42	1.71
79526--79585	18	3.4	16	84	11	66	75	1	21	1	0.99
79543--79594	8	6.2	8	85	14	70	75	0	25	0	0.81
79550--79585	13	2.8	13	84	16	56	77	0	22	0	0.76
79550--79587	5	7.4	5	88	11	51	78	0	21	0	0.74
82005--82064	30	2.0	31	83	3	77	26	8	10	55	1.61
82968--83006	20	2.0	20	100	0	78	48	10	5	35	1.59
84379--84424	11	4.0	12	77	8	51	71	4	10	13	1.27
84379--84421	23	1.9	22	90	4	68	69	4	11	13	1.33
87644--87793	35	4.3	35	89	1	185	29	38	3	29	1.73
88182--88223	6	7.2	6	89	10	61	80	0	19	0	0.70
88179--88223	16	2.9	16	83	12	58	80	0	20	0	0.72
93387--93468	11	6.9	11	72	22	51	30	36	4	28	1.78
93387--93484	36	2.8	36	90	1	144	31	34	5	28	1.79
97247--97331	11	7.2	11	72	22	57	30	37	4	27	1.77
97244--97348	36	2.9	35	91	4	165	29	37	5	27	1.80
99102--99159	13	4.7	13	70	12	50	27	41	1	29	1.66
99102--99204	33	3.0	35	84	5	138	27	37	3	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99351--99391	15	2.7	15	92	3	64	12	29	0	58	1.34

Tables:   1

The End!