genome.fa.s75.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000075.1 Hibiscus syriacus cultivar Beakdansim tig00000139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141099

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2748--2791	22	2.0	22	95	0	79	15	4	34	45	1.67
8506--8554	19	2.5	19	93	3	80	28	16	32	22	1.95
12587--12616	15	1.9	16	93	6	53	26	6	26	40	1.81
15775--15834	22	2.9	21	79	16	63	35	15	20	30	1.93
16174--17022	54	15.7	54	89	1	949	32	18	18	30	1.95
19016--19092	2	38.5	2	100	0	154	49	0	0	50	1.00
22966--23023	25	2.3	27	82	11	77	44	0	1	53	1.10
22990--23080	42	2.2	42	78	7	96	47	1	0	51	1.07
23061--23121	32	1.9	31	83	12	79	50	1	1	45	1.21
28662--28700	19	1.9	19	90	10	60	43	2	2	51	1.29
28678--28718	20	1.9	23	85	14	61	43	0	2	53	1.13
34338--34388	17	3.2	17	81	8	54	49	0	1	49	1.12
34342--34388	14	3.4	14	78	18	53	48	0	2	48	1.13
34347--34393	17	2.9	16	78	18	53	46	0	2	51	1.13
34941--35395	131	3.5	131	86	0	595	39	19	11	30	1.87
37561--37609	3	16.0	3	87	4	71	65	0	0	34	0.93
37780--38140	134	2.7	135	81	3	420	29	15	19	34	1.93
40994--41032	20	2.0	20	84	0	51	23	7	23	46	1.78
41209--41267	20	2.8	21	79	10	66	18	23	35	22	1.96
41208--41267	23	2.7	23	77	10	72	18	23	36	21	1.95
45134--45303	83	2.0	83	100	0	340	35	22	11	30	1.90
48903--48948	10	4.9	10	79	12	53	10	8	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48903--48977	29	2.6	28	80	12	80	9	13	1	76	1.09
48935--48982	20	2.5	20	83	10	55	8	16	2	72	1.18
59626--60117	131	3.8	131	87	0	662	38	18	12	31	1.87
62035--62100	26	2.5	26	95	0	114	34	22	18	24	1.96
62292--62340	3	16.3	3	100	0	98	67	0	0	32	0.91
62902--62948	14	3.4	14	80	14	53	46	0	2	51	1.13
62884--62963	9	8.3	10	69	25	57	42	1	1	55	1.16
62886--62959	29	2.6	27	74	20	69	43	1	1	54	1.17
65119--65157	2	19.5	2	100	0	78	51	0	0	48	1.00
74465--74505	21	2.0	21	85	0	55	21	39	29	9	1.86
75229--75287	21	2.7	22	76	5	75	22	25	20	32	1.98
75276--75447	20	8.6	20	84	6	161	33	20	21	24	1.97
75272--75447	40	4.4	40	91	1	264	32	21	21	24	1.97
75391--75469	20	4.0	20	93	0	122	24	25	21	29	1.99
75272--75469	60	3.3	60	79	6	195	31	20	21	26	1.98
75644--75686	22	2.0	22	90	0	68	23	39	16	20	1.92
76073--76179	20	5.4	20	87	3	119	14	16	23	45	1.84
78422--78494	30	2.4	30	93	0	119	31	23	20	24	1.98
78480--78607	31	4.1	31	78	6	141	33	21	18	25	1.97
80909--80958	18	2.8	18	100	0	100	32	20	6	42	1.76
81106--81173	20	3.4	20	83	4	84	33	23	22	20	1.97
81217--81282	20	3.4	19	81	8	80	21	15	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83260--83325	30	2.2	30	100	0	132	28	3	13	54	1.54
83475--83792	20	16.9	20	74	11	269	22	19	22	35	1.96
83492--83750	54	4.7	54	89	3	367	22	20	22	35	1.96
83608--83789	74	2.5	74	78	7	199	21	19	22	36	1.95
83492--83792	108	2.7	111	85	7	378	22	19	22	35	1.96
83967--84008	18	2.3	18	87	0	57	19	4	26	50	1.67
91210--91270	23	2.9	21	85	11	72	21	32	26	19	1.97
92905--92934	12	2.5	12	88	0	51	33	30	36	0	1.58
95693--95729	14	2.6	14	91	4	56	5	21	21	51	1.68
96792--96934	20	7.1	20	75	9	110	27	21	22	27	1.99
96810--96923	40	2.8	40	87	2	165	26	21	21	31	1.98
101683--101886	102	2.0	102	92	0	336	39	7	14	39	1.74
103824--103959	60	2.3	59	80	3	148	31	16	16	34	1.92
117148--117186	21	1.9	20	84	5	51	23	5	2	69	1.21
118557--118589	7	4.7	7	100	0	66	39	45	0	15	1.46
121494--121558	23	2.8	23	95	0	112	23	36	7	32	1.83
125641--125669	10	2.9	10	100	0	58	41	0	6	51	1.28
126386--126437	25	2.2	25	89	6	81	34	25	0	40	1.56
126434--126472	18	2.2	18	95	0	69	30	12	0	56	1.37
127474--127779	164	1.9	164	81	1	380	34	21	14	29	1.92
127915--127988	2	37.0	2	100	0	148	50	0	0	50	1.00
128899--128945	18	2.7	17	81	12	51	70	6	19	4	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131473--131552	21	3.8	21	76	15	85	18	18	27	35	1.95
131455--131551	42	2.3	42	98	0	185	19	18	25	36	1.95
133830--133861	2	16.0	2	100	0	64	50	0	0	50	1.00
134861--135030	58	2.9	58	84	2	207	31	24	15	28	1.95
137657--137725	29	2.3	29	85	5	84	31	15	8	43	1.78
137669--137725	29	1.9	30	89	3	89	31	14	7	47	1.70

Tables:   1

The End!