Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000750.1 Hibiscus syriacus cultivar Beakdansim tig00001445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118013
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:2615 original size:18 final size:18
Alignment explanation
Indices: 2592--2627 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2582 ACGGCGGTGG
*
2592 CATCATATATGGATGCGA
1 CATCATAAATGGATGCGA
*
2610 CATCATAAATGGCTGCGA
1 CATCATAAATGGATGCGA
2628 TGGCTACTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (18 bp):
CATCATAAATGGATGCGA
Found at i:4324 original size:18 final size:18
Alignment explanation
Indices: 4301--4342 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
4291 AAAATATATT
4301 AGTAAAATGCTTAAATAA
1 AGTAAAATGCTTAAATAA
4319 AGTAAAATGCTTAAATAA
1 AGTAAAATGCTTAAATAA
*
4337 ATTAAA
1 AGTAAA
4343 TACATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.57, C:0.05, G:0.10, T:0.29
Consensus pattern (18 bp):
AGTAAAATGCTTAAATAA
Found at i:4601 original size:51 final size:51
Alignment explanation
Indices: 4536--4635 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
4526 TATCGCAGAT
* ** *
4536 CAGGGGGCGCGCTATACT-CACGTGTAAGCCATGTCAGCGTATAGCGCGGTA
1 CAGGAGGCGCGCTATACTCCACGTG-AAGCCAAATCAGCATATAGCGCGGTA
*
4587 CAGGAGGCGCGCTATACTCCACGTGACGCCAAATCAGCATATAGCGCGG
1 CAGGAGGCGCGCTATACTCCACGTGAAGCCAAATCAGCATATAGCGCGG
4636 GGCAGGGAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 37 0.86
52 6 0.14
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.17
Consensus pattern (51 bp):
CAGGAGGCGCGCTATACTCCACGTGAAGCCAAATCAGCATATAGCGCGGTA
Found at i:4648 original size:51 final size:51
Alignment explanation
Indices: 4536--4655 Score: 136
Period size: 51 Copynumber: 2.4 Consensus size: 51
4526 TATCGCAGAT
* ** * *
4536 CAGGGGGCGCGCTATACTCACGTGTAAGCCATGTCAGCGTATAGCGCGGTA
1 CAGGGAGCGCGCTATACTCACGTGTAAGCCAAATCAGCATATAGCGCGGGA
* *
4587 CA-GGAGGCGCGCTATACTCCACGTG-ACGCCAAATCAGCATATAGCGCGGGG
1 CAGGGA-GCGCGCTATACT-CACGTGTAAGCCAAATCAGCATATAGCGCGGGA
*
4638 CAGGGAGCGCGCTTTACT
1 CAGGGAGCGCGCTATACT
4656 ACTACGGGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
50 2 0.03
51 47 0.81
52 9 0.16
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.17
Consensus pattern (51 bp):
CAGGGAGCGCGCTATACTCACGTGTAAGCCAAATCAGCATATAGCGCGGGA
Found at i:9068 original size:15 final size:15
Alignment explanation
Indices: 9050--9084 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
9040 ACGATCAAAT
9050 AATAAAAATTCAATG
1 AATAAAAATTCAATG
9065 AAT-AAAATTCAATG
1 AATAAAAATTCAATG
*
9079 ATTAAA
1 AATAAA
9085 TTAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (15 bp):
AATAAAAATTCAATG
Found at i:15364 original size:30 final size:30
Alignment explanation
Indices: 15330--15387 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15320 ATAAATAAAT
**
15330 AAAACAAAAGGTTAAAGGATCAAAATAGCA
1 AAAACAAAAACTTAAAGGATCAAAATAGCA
**
15360 AAAACAAAAACTTAAAGTCTCAAAATAG
1 AAAACAAAAACTTAAAGGATCAAAATAG
15388 TAATTATAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (30 bp):
AAAACAAAAACTTAAAGGATCAAAATAGCA
Found at i:17999 original size:84 final size:84
Alignment explanation
Indices: 17039--17995 Score: 1297
Period size: 84 Copynumber: 11.4 Consensus size: 84
17029 ATGTGTCATC
* * * * * *
17039 GAGCTGAGTGGAATCAAACTCGAAAGT-TTTTGTTGACAGATAACCCTTCTTGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* * *
17103 CTGTAAATTTGATTTGCCTCT
66 CTGCAAA--TGATGTGCCTTT
* * * *
17124 GAGTTGAGTGTAATCGAACTCGAAGGTATTTTGTTGACAGATAGCCCTTCTTGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
17189 CTGCAAATGATATGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * * ** * *
17208 GAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCATATAACCCTTTTTACCTTGAACTATA
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* * *
17273 TTGTAAATGATGTGTCTTT
66 CTGCAAATGATGTGCCTTT
*
17292 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGCCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
**
17357 CTATAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * *
17376 GAGCAGAGTGTAATCGAACTCGAAGGTCTTTTCTTGGCATATAACCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
17441 CTGCAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
* *
17460 GAGTTGAGTGTAATCGAACTTGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
17525 TTGCAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
* * *
17544 GAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGTAAATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* *
17609 CTACAAATGATATGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * * *
17628 GAACTTAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAACCCTTCTCGCCTTGAGCTATA
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* * *
17693 TTGCAAATGATGTACATTT
66 CTGCAAATGATGTGCCTTT
* * * *
17712 GAGCTGAGTGTAATCAAACTCGAATGTCTTTTGTTGGCAGATAACCCTGCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
17777 CTGCAAATGATGTGCTTTT
66 CTGCAAATGATGTGCCTTT
* *
17796 G-GACTGAGTGTAATCGAACTCGAAGGTTTTTTCTTGGCAGATAGCCCTTCTCGCCTTGAGCTAT
1 GAG-CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTAT
* *
17860 GTTGTAAATGATGTGCCTTT
65 GCTGCAAATGATGTGCCTTT
* * * * * *
17880 GAGCTGAGTATAATCGAACTCGAAGGTATTTTATTGGTAGATAGCCCTTCTCACCTTGAGCTATA
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
17945 CTGCAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
*
17964 GAGTTGAGTGTAATCGAACTCGAAGGTCTTTT
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTT
17996 ATTGAAGGTG
Statistics
Matches: 770, Mismatches: 99, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
83 1 0.00
84 703 0.91
85 24 0.03
86 42 0.05
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (84 bp):
GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
CTGCAAATGATGTGCCTTT
Found at i:19321 original size:32 final size:32
Alignment explanation
Indices: 19285--19428 Score: 138
Period size: 32 Copynumber: 4.5 Consensus size: 32
19275 TTTATTTTGA
* *
19285 TCGGGTCGGTTCGAGTTATTTAAGTGTGATAT
1 TCGGGTCGGTTCGGGTTTTTTAAGTGTGATAT
19317 TC--G--GG-TCGGG-TTTTTAAGTGTGATAT
1 TCGGGTCGGTTCGGGTTTTTTAAGTGTGATAT
19343 TCGGGTCGAGTCGGGTCGGGTTTTTTAAGTGTGATAT
1 TCGGGTCG-GT----TCGGGTTTTTTAAGTGTGATAT
* * *
19380 TCAGGTTGGGTCGGGTTTTTTAAGTGTGATAT
1 TCGGGTCGGTTCGGGTTTTTTAAGTGTGATAT
* *
19412 TCGAGTCGGGTCGGGTT
1 TCGGGTCGGTTCGGGTT
19429 CGGGTTTAGG
Statistics
Matches: 93, Mismatches: 8, Indels: 22
0.76 0.07 0.18
Matches are distributed among these distances:
26 17 0.18
27 4 0.04
28 3 0.03
30 2 0.02
31 1 0.01
32 38 0.41
36 6 0.06
37 22 0.24
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.40
Consensus pattern (32 bp):
TCGGGTCGGTTCGGGTTTTTTAAGTGTGATAT
Found at i:19377 original size:37 final size:36
Alignment explanation
Indices: 19317--19435 Score: 158
Period size: 32 Copynumber: 3.4 Consensus size: 36
19307 AGTGTGATAT
19317 TCGGGTCGGG-TTTTTAAGTGTGATATTCGGGTCGAG
1 TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCG-G
*
19353 TCGGGTCGGGTTTTTTAAGTGTGATATTCAGGT---
1 TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGG
*
19386 T-GGGTCGGGTTTTTTAAGTGTGATATTCGAGTCGGG
1 TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTC-GG
19422 TCGGGTTCGGGTTT
1 TCGGG-TCGGGTTT
19436 AGGGTGAAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
32 29 0.40
33 1 0.01
36 11 0.15
37 24 0.33
38 8 0.11
ACGTcount: A:0.13, C:0.10, G:0.38, T:0.39
Consensus pattern (36 bp):
TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGG
Found at i:19425 original size:69 final size:63
Alignment explanation
Indices: 19285--19435 Score: 194
Period size: 63 Copynumber: 2.3 Consensus size: 63
19275 TTTATTTTGA
* * * *
19285 TCGGGTCGGTTCGAGTTATTTAAGTGTGATATTCGGGTCGGGTTTTTAAGTGTGATATTCGGG
1 TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTAAGTGTGATATTCGAG
*
19348 TCGAGTCGGGTCGGGTTTTTTAAGTGTGATATTCAGGTTGGGTCGGGTTTTTTAAGTGTGATATT
1 TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTC-----GGGTCGGG-TTTTTAAGTGTGATATT
19413 CGAG
60 CGAG
19417 TCGGGTCGGGTTCGGGTTT
1 TCGGGTCGGG-TCGGGTTT
19436 AGGGTGAAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
63 30 0.40
68 8 0.11
69 29 0.39
70 8 0.11
ACGTcount: A:0.14, C:0.10, G:0.36, T:0.40
Consensus pattern (63 bp):
TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTAAGTGTGATATTCGAG
Found at i:20030 original size:17 final size:18
Alignment explanation
Indices: 20005--20051 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
19995 TATGGAATTG
*
20005 GATTCCAATTCC-TGACA
1 GATTCCAATTCCTTCACA
*
20022 GATTTCAATTCCTTCACA
1 GATTCCAATTCCTTCACA
20040 GATTCCAATTCC
1 GATTCCAATTCC
20052 CTCATAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Found at i:24287 original size:2 final size:2
Alignment explanation
Indices: 24280--24336 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
24270 AATTAAAAGA
24280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24322 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
24337 ATAAATAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25857 original size:22 final size:23
Alignment explanation
Indices: 25830--25883 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
25820 AAACGATCGA
25830 AAAACGTGTCA-AAAGATAGAAG
1 AAAACGTGTCATAAAGATAGAAG
* *
25852 AAAACGAGTCATAAAGATAGATG
1 AAAACGTGTCATAAAGATAGAAG
*
25875 AAAATGTGT
1 AAAACGTGT
25884 TATACAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.52, C:0.07, G:0.22, T:0.19
Consensus pattern (23 bp):
AAAACGTGTCATAAAGATAGAAG
Found at i:27860 original size:35 final size:35
Alignment explanation
Indices: 27814--27883 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
27804 TTAATTTTCT
27814 GTATGGTTACAGTTTCTTTTCTATAATGGTTGCTA
1 GTATGGTTACAGTTTCTTTTCTATAATGGTTGCTA
*
27849 GTATGGTTACAGTTTCTTTTCTATAGTGGTTGCTA
1 GTATGGTTACAGTTTCTTTTCTATAATGGTTGCTA
27884 TGTTGCTTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.19, C:0.11, G:0.21, T:0.49
Consensus pattern (35 bp):
GTATGGTTACAGTTTCTTTTCTATAATGGTTGCTA
Found at i:36617 original size:24 final size:25
Alignment explanation
Indices: 36571--36618 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
36561 AATATCATAC
* * *
36571 AAAATATAATATAATTATTTTAAAA
1 AAAATATAATAAAAATATATTAAAA
36596 AAAAT-TAATAAAAATATATTAAA
1 AAAATATAATAAAAATATATTAAA
36619 TATGAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
AAAATATAATAAAAATATATTAAAA
Found at i:36767 original size:33 final size:33
Alignment explanation
Indices: 36728--36794 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
36718 TTTCATCTCT
36728 AAATTATGATTATCATTCTAAATGAGTCCTCAA
1 AAATTATGATTATCATTCTAAATGAGTCCTCAA
* *
36761 AAATTATGATTATCATTCTACATGAGTTCTCAA
1 AAATTATGATTATCATTCTAAATGAGTCCTCAA
36794 A
1 A
36795 CTTTTGAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (33 bp):
AAATTATGATTATCATTCTAAATGAGTCCTCAA
Found at i:40707 original size:60 final size:60
Alignment explanation
Indices: 40629--40741 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
40619 GTCATCTGAT
40629 TATAGGATATTATTTTGTTGAGT-CATCCAACTATTAAAAGTTATAAAATGATCGTCCGTC
1 TATAGGATATTATTTTGTTGAGTCCAT-CAACTATTAAAAGTTATAAAATGATCGTCCGTC
**
40689 TATAGGA-AGTTATTTTGTTGAGTCCATCGGCTATTAAAAGTTATAAAATGATC
1 TATAGGATA-TTATTTTGTTGAGTCCATCAACTATTAAAAGTTATAAAATGATC
40742 ACCTGACTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
59 1 0.02
60 45 0.92
61 3 0.06
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (60 bp):
TATAGGATATTATTTTGTTGAGTCCATCAACTATTAAAAGTTATAAAATGATCGTCCGTC
Found at i:42078 original size:20 final size:20
Alignment explanation
Indices: 42053--42102 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
42043 GTTCCATGTA
42053 TGTATGTACGAATATTTATG
1 TGTATGTACGAATATTTATG
42073 TGTATGTACGAATATTTATG
1 TGTATGTACGAATATTTATG
*
42093 TGTATATACG
1 TGTATGTACG
42103 TGTATATATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (20 bp):
TGTATGTACGAATATTTATG
Found at i:42112 original size:20 final size:20
Alignment explanation
Indices: 42053--42113 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
42043 GTTCCATGTA
* *
42053 TGTATGTACGAATATTTATG
1 TGTATATACGAATATATATG
* *
42073 TGTATGTACGAATATTTATG
1 TGTATATACGAATATATATG
**
42093 TGTATATACGTGTATATATG
1 TGTATATACGAATATATATG
42113 T
1 T
42114 ATGTGATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.46
Consensus pattern (20 bp):
TGTATATACGAATATATATG
Found at i:45202 original size:39 final size:36
Alignment explanation
Indices: 45117--45220 Score: 136
Period size: 36 Copynumber: 2.9 Consensus size: 36
45107 TGAGGAGGAG
45117 GTTGAAACTGCTGCAAATCAAATGCAACAACACACA
1 GTTGAAACTGCTGCAAATCAAATGCAACAACACACA
* * *
45153 GTTGAAACTGCTGCATATCAAATGCAGCAACATACA
1 GTTGAAACTGCTGCAAATCAAATGCAACAACACACA
* * * * *
45189 GTTGTAACTACTGCAGATCAAGTTCAACAACA
1 GTTGAAACTGCTGCAAATCAAATGCAACAACA
45221 AGCGCCGCCT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 59 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.21
Consensus pattern (36 bp):
GTTGAAACTGCTGCAAATCAAATGCAACAACACACA
Found at i:48024 original size:29 final size:29
Alignment explanation
Indices: 47982--48055 Score: 148
Period size: 29 Copynumber: 2.6 Consensus size: 29
47972 TTATCAACAC
47982 TAGTGGAATAACCTAATTTGAGCATAGAT
1 TAGTGGAATAACCTAATTTGAGCATAGAT
48011 TAGTGGAATAACCTAATTTGAGCATAGAT
1 TAGTGGAATAACCTAATTTGAGCATAGAT
48040 TAGTGGAATAACCTAA
1 TAGTGGAATAACCTAA
48056 CTAGCATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (29 bp):
TAGTGGAATAACCTAATTTGAGCATAGAT
Found at i:49397 original size:29 final size:30
Alignment explanation
Indices: 49353--49422 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
49343 CGGATCGTTG
*
49353 GGAAT-ACCTAATTTTGAGTATATACTAGT
1 GGAATAACCTAATTTTGAGCATATACTAGT
*
49382 GGAATAATCTAA-TTTGAGCATATACTAGT
1 GGAATAACCTAATTTTGAGCATATACTAGT
49411 GGAATAACCTAA
1 GGAATAACCTAA
49423 CTAGCATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 32 0.86
30 5 0.14
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (30 bp):
GGAATAACCTAATTTTGAGCATATACTAGT
Found at i:50568 original size:30 final size:30
Alignment explanation
Indices: 50515--50719 Score: 357
Period size: 29 Copynumber: 7.0 Consensus size: 30
50505 GGACCTATCC
*
50515 AGGTCATAAAGATCTTC-GTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50544 AGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50574 AGGTCATAAAGATCCTC-GTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50603 AGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50633 AGGTCAT-AAGATCCTCGGTAACTATCCA-
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
*
50661 AGGTCAT-AAGATCCTTGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50690 AGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50720 TCCCGAAGAA
Statistics
Matches: 169, Mismatches: 3, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
28 27 0.16
29 73 0.43
30 69 0.41
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (30 bp):
AGGTCATAAAGATCCTCGGTAACTATCCAG
Found at i:50599 original size:59 final size:60
Alignment explanation
Indices: 50515--50719 Score: 357
Period size: 59 Copynumber: 3.5 Consensus size: 60
50505 GGACCTATCC
*
50515 AGGTCATAAAGATCTTC-GTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
50574 AGGTCATAAAGATCCTC-GTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
*
50633 AGGTCAT-AAGATCCTCGGTAACTATCCA-AGGTCAT-AAGATCCTTGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
50690 AGGTCATAAAGATCCTCGGTAACTATCCAG
1 AGGTCATAAAGATCCTCGGTAACTATCCAG
50720 TCCCGAAGAA
Statistics
Matches: 141, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
57 28 0.20
58 37 0.26
59 76 0.54
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (60 bp):
AGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAG
Found at i:50762 original size:30 final size:30
Alignment explanation
Indices: 50726--50782 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
50716 CCAGTCCCGA
50726 AGAACCTAGGTA-ACTATCGCATATGTCCTT
1 AGAACCTAGGTATACTATC-CATATGTCCTT
50756 AGAACCTAGGTATACTATCCATATGTC
1 AGAACCTAGGTATACTATCCATATGTC
50783 TCGAAAGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (30 bp):
AGAACCTAGGTATACTATCCATATGTCCTT
Found at i:51007 original size:4 final size:4
Alignment explanation
Indices: 50998--56314 Score: 5264
Period size: 4 Copynumber: 1343.5 Consensus size: 4
50988 TATGCATTAT
50998 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51046 ATAC ATATC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51095 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51141 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51188 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51236 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
51284 ATAC -TAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
51331 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
51378 A-AC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51424 ATAC ATAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51473 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51521 ATAC AT-- ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATA- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
51564 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51612 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51659 A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51706 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51754 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51800 ATAC ATAC TATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51848 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51896 ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51941 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51989 ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC
52036 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52084 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
52131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC AT-C ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52176 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
52224 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
52272 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52320 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52366 ATAC ATAC ATAC ATAAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52414 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52458 ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52504 AT-- ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
52549 CTAC AGAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC
*
52598 ATAC AGAC ATAC AT-C ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52644 ATAC ATAC ATAC -TAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52690 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52738 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
52785 ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATCAC AAAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC
*
52833 ATAC ATAC ATAC AGAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52881 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52927 ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
52973 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC A-AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53020 ATAC ATAC ATAC ATAC ATATC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53069 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
53115 ATA- ATAC A-CC ATAC ATAC ATAC ATAC --AC ATAC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53158 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53204 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53252 ATAC ATAC ATA- ATAC AT-C -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53297 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC
53345 ATAC AATAC ATAC ATAC ATAC ATAC ATAC AATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
*
53395 --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AGAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53439 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53487 -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53534 A-AC ATAC ATAC ATAC TATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53582 -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53629 A-AC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC
53676 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53724 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC
53773 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53820 -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
53866 ATAC CTAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
53910 ATAC ATCCAC ATAC CTAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
53958 ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
* * * * * * * * * *
54006 ATAC ATGTC AT-T TTATC ATAC -TCC TATAGT ATTATC CTTC ATCTC TTGTTC
1 ATAC AT-AC ATAC ATA-C ATAC ATAC -ATA-C A-TA-C ATAC AT-AC --ATAC
* * * * ** * ** *
54057 AT-T TTTC ATCC AATA- ACTTT ATAA ATGT ATAT ATCAC GTATAC -TA-
1 ATAC ATAC ATAC -ATAC A-TAC ATAC ATAC ATAC AT-AC --ATAC ATAC
* * * * * * * * * * ** *
54102 ATTC CTAG GTCCC AT-C AAAC -TAGC ATAT TTTC ATAT ATTT GTA- AT-C
1 ATAC ATAC AT-AC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC
** ** * * * * * * ** * * *
54148 ATGT ATTT AT-T TTTC ATATA ATTC ATGTC ACCC CT-C ATATG ATTTC
1 ATAC ATAC ATAC ATAC ATA-C ATAC AT-AC ATAC ATAC ATA-C A-TAC
* * * * * * * * * * *
54194 ATATTC ATATGC TATAT ATAT ATAC -TTC ATATTC TTTC TTAT GTCC TTTCC
1 ATA--C ATA--C -ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC -ATAC
* * * * * * * *
54245 ATAC -TTC TTA- TTTC ATATTC TTATGAA AT-C ATA- TTGATC AT-T TTA-
1 ATAC ATAC ATAC ATAC ATA--C --AT-AC ATAC ATAC AT-A-C ATAC ATAC
* * * * * * ** * * * *
54290 ACTAT TTCAC CTAT TTA- ACAC ATTT AT-C -TAC CTAT TTAC ACA- ACT-C
1 A-TAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC
* * * * * * * *
54336 ATATA ATAT ATAT ATAC TGTAAC ATGTC AATAA ATGC -T-C ATTC ATAC
1 ATA-C ATAC ATAC ATAC -AT-AC AT-AC -ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
54383 CTAT AAACC ATAAC AAAC ACATC ATAC ACAC TTCAT ATAC CTAT ATA-
1 ATAC ATA-C AT-AC ATAC ATA-C ATAC ATAC AT-AC ATAC ATAC ATAC
* * * * * * * *
54430 ATATC -T-C GTA- ACT-C ATTC AATCCC ATATG ACAC AGAC ATTC ATAT
1 ATA-C ATAC ATAC A-TAC ATAC -AT-AC ATA-C ATAC ATAC ATAC ATAC
* ** * * * * * *
54475 ATAAGC TCTA- ATTGG A-AA ATAG ACT-T ATCAC A-ATC -TGC ATAGT ATCCC
1 AT-A-C -ATAC A-TAC ATAC ATAC A-TAC AT-AC ATA-C ATAC ATA-C AT-AC
* * * * * *
54523 ATA- ATGC ATATGGT ATGA- ATTC ATATC ATAT TTA- ATA- ATA- TTGA-
1 ATAC ATAC ATA---C AT-AC ATAC ATA-C ATAC ATAC ATAC ATAC AT-AC
** *
54567 ATGA- AT-C ATGT AT-C A-AG ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
54612 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
54660 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
54708 AT-- ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
54753 -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
54798 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
54846 ATAC CTCC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATCAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC
54895 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATA- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
54941 AT-C ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
54986 ATAC ATAC ATAC ATAC ATAC ATAC AGAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
55034 ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
55081 ATAC ATAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
55129 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** ** * * * * * *
55177 ATAC ATGTC -T-C ATTT ATGTT TTATC ATAC -TCC TATAG TTATC CTTC
1 ATAC AT-AC ATAC ATAC AT-AC ATA-C ATAC ATAC -ATAC ATA-C ATAC
* * * * * * * * * * ** *
55223 ATCTC TTGTTC AT-T TTTC ATCC AATAAC TTAT ATAA ATGT ATAT ATATC
1 AT-AC --ATAC ATAC ATAC ATAC -AT-AC ATAC ATAC ATAC ATAC ATA-C
*** * * * * * * * * * *
55272 ACGT ATAC -TA- ATTC CTAG GTCCC AT-C AAAC -TAGC ATAT TTTC ATAT
1 ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATA-C ATAC ATAC ATAC
** * ** ** * * * * * * * *
55318 ATTTT GTA- AT-C ATGT ATTT AT-T TTTC ATATA ATTC ATGTC A-CC CT-C
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC AT-AC ATAC ATAC
* * * * * * * * * *
55364 ATATG ATTTC ATTC ATATC -TATT ATAT ATAC -TTC ATATTC TTTC TTAT
1 ATA-C A-TAC ATAC ATA-C ATA-C ATAC ATAC ATAC ATA--C ATAC ATAC
* * * * * * * * * *
55412 GTCC TTTCC ATAC -TTC TTA- TTTC ATATTC TTATGAA AT-C ATA- TTGATC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATA--C --AT-AC ATAC ATAC AT-A-C
* * * * * * ** * * *
55460 AT-T TTAAC TATTCAC CTAT TTA- ACAC ATTT AT-C -TAC CTAT TTAC
1 ATAC AT-AC -A-T-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
55504 ACA- ACT-C ATAT A-AT ATAT ATAT ATAC TGTAAC ATGTC AATAA ATATGC
1 ATAC A-TAC ATAC ATAC ATAC ATAC ATAC -AT-AC AT-AC -ATAC ATA--C
* * * * * * * * *
55552 -T-C ATTC ATAC CTAT AAACC ATAAC AAAC ACATC ATAC ACAC TTCAT
1 ATAC ATAC ATAC ATAC ATA-C AT-AC ATAC ATA-C ATAC ATAC AT-AC
* * * * * *
55598 ATAC CTAAT ATAG ATATC -T-C GTA- ACT-C ATTC AATCCC AT-- ATGAC
1 ATAC AT-AC ATAC ATA-C ATAC ATAC A-TAC ATAC -AT-AC ATAC AT-AC
* * * * ** * * *
55642 AGAC ATTC ATAT A-AGC TCTA- AT-C -TGG A-AA ATAG ACT-T ATCAC
1 ATAC ATAC ATAC ATA-C -ATAC ATAC ATAC ATAC ATAC A-TAC AT-AC
* * * * * * *
55684 A-ATC -TGC ATA- GTAT ATCCC ATA- ATGC ATATGGT ATGA- ATTC ATATC
1 ATA-C ATAC ATAC ATAC AT-AC ATAC ATAC ATA---C AT-AC ATAC ATA-C
* * * ** *
55730 ATAT TTA- ATA- ATA- TTGA- ATGA- AT-C ATGT AT-C AAAC ATAC ATAC
1 ATAC ATAC ATAC ATAC AT-AC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC
55773 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
55821 -TAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
55868 ATAC ATAC -TAC ATAC ATAC ATAC AATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
55916 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATACC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC
55963 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56011 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56058 ATAC ATAC ATAC -TAC ATAC ATAC ATAC -TAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56102 ATAC ATAC ATAC ATAC AT-- ATAC ATAC A-AC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
56146 ATAC AGAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56194 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATA- AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56239 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
56287 ATAC ATAC ATAC -TAC ATAC ATAC A-AC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
56315 GTCATCATTT
Statistics
Matches: 4549, Mismatches: 412, Indels: 704
0.80 0.07 0.12
Matches are distributed among these distances:
2 61 0.01
3 298 0.07
4 3913 0.86
5 211 0.05
6 43 0.01
7 15 0.00
8 6 0.00
9 2 0.00
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:60915 original size:29 final size:28
Alignment explanation
Indices: 60875--60966 Score: 103
Period size: 29 Copynumber: 3.6 Consensus size: 28
60865 TTATCAACAC
60875 TAGTGGAATAACCTAAATTGAGCATATA
1 TAGTGGAATAACCTAAATTGAGCATATA
*
60903 CTAGTGGAATAACCT-AACT-AGC----A
1 -TAGTGGAATAACCTAAATTGAGCATATA
60926 TA-TGGAATAA-CTAAATTGAGCATATA
1 TAGTGGAATAACCTAAATTGAGCATATA
60952 TAGTGG-ATAACCTAA
1 TAGTGGAATAACCTAA
60967 CTAGCATATT
Statistics
Matches: 53, Mismatches: 2, Indels: 18
0.73 0.03 0.25
Matches are distributed among these distances:
20 2 0.04
21 11 0.21
22 5 0.09
23 1 0.02
26 7 0.13
27 10 0.19
28 3 0.06
29 14 0.26
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (28 bp):
TAGTGGAATAACCTAAATTGAGCATATA
Found at i:60973 original size:47 final size:50
Alignment explanation
Indices: 60878--60975 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 50
60868 TCAACACTAG
60878 TGGAATAACCTAAATTGAGCATATACTAGTGGAATAACCTAACTAGCATA
1 TGGAATAACCTAAATTGAGCATATACTAGTGGAATAACCTAACTAGCATA
60928 TGGAATAA-CTAAATTGAGCATATA-TAGTGG-ATAACCTAACTAGCATA
1 TGGAATAACCTAAATTGAGCATATACTAGTGGAATAACCTAACTAGCATA
60975 T
1 T
60976 TTCCATATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 18 0.38
48 6 0.12
49 16 0.33
50 8 0.17
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (50 bp):
TGGAATAACCTAAATTGAGCATATACTAGTGGAATAACCTAACTAGCATA
Found at i:61643 original size:19 final size:22
Alignment explanation
Indices: 61601--61643 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
61591 AGTCGCTCCG
61601 TGGGTCAACCGATAGTGAAGCT
1 TGGGTCAACCGATAGTGAAGCT
61623 TGGGTCAA-CGA-AGTG-AGCT
1 TGGGTCAACCGATAGTGAAGCT
61642 TG
1 TG
61644 CCATGGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 4 0.19
21 3 0.14
22 8 0.38
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (22 bp):
TGGGTCAACCGATAGTGAAGCT
Found at i:62230 original size:13 final size:14
Alignment explanation
Indices: 62209--62247 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
62199 AATTTCAGGG
*
62209 TAAATAAAATTA-A
1 TAAAAAAAATTATA
62222 TAAAAAAAAATTATA
1 T-AAAAAAAATTATA
62237 TAAAAAAAATT
1 TAAAAAAAATT
62248 CAGATTATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 1 0.04
14 20 0.87
15 2 0.09
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAAAAAAATTATA
Found at i:62233 original size:14 final size:15
Alignment explanation
Indices: 62214--62245 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
62204 CAGGGTAAAT
62214 AAAATTA-ATAAAAA
1 AAAATTATATAAAAA
62228 AAAATTATATAAAAA
1 AAAATTATATAAAAA
62243 AAA
1 AAA
62246 TTCAGATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATTATATAAAAA
Found at i:67734 original size:16 final size:17
Alignment explanation
Indices: 67713--67744 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67703 GTTGTGGAAA
67713 TGAA-TTTGAGATGTAT
1 TGAATTTTGAGATGTAT
67729 TGAATTTTGAGATGTA
1 TGAATTTTGAGATGTA
67745 AAAAAGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (17 bp):
TGAATTTTGAGATGTAT
Found at i:67779 original size:2 final size:2
Alignment explanation
Indices: 67772--67804 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67762 TGTGTTCTTG
67772 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67805 GTATTTGTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77401 original size:58 final size:57
Alignment explanation
Indices: 77200--77421 Score: 248
Period size: 57 Copynumber: 3.9 Consensus size: 57
77190 GTCTACGTGA
* * *
77200 ATATGTTTTATGAGAATAAATGATAATTTGAATAATGTTATATGAAACACTATGAGT
1 ATATGTTTTATGTGAATAAATGATAATTTGAATAATGTTATATGAAATACTATGAAT
* * * * * * *
77257 ATATGGTTTATGTGAATAAATGATAAATCGAGTAATGCTATATGAAATGCTATGATT
1 ATATGTTTTATGTGAATAAATGATAATTTGAATAATGTTATATGAAATACTATGAAT
* * ** *
77314 A-ATTGTTCTATGTGAATAAATAATAAATTTGGGTAATGTTATGTGAAATACTATGAAT
1 ATA-TGTTTTATGTGAATAAATGAT-AATTTGAATAATGTTATATGAAATACTATGAAT
* * *
77372 ATATGTTTTTATGTGAACAAATGATAATTTGAATAATGTAATGTGAAATA
1 ATATG-TTTTATGTGAATAAATGATAATTTGAATAATGTTATATGAAATA
77422 ATTATATGGT
Statistics
Matches: 136, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
56 1 0.01
57 67 0.49
58 51 0.38
59 17 0.12
ACGTcount: A:0.41, C:0.04, G:0.17, T:0.39
Consensus pattern (57 bp):
ATATGTTTTATGTGAATAAATGATAATTTGAATAATGTTATATGAAATACTATGAAT
Found at i:77526 original size:23 final size:23
Alignment explanation
Indices: 77500--77571 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
77490 GGTTCTACGC
*
77500 GGTCATTCGGGACAATTCTATGT
1 GGTCCTTCGGGACAATTCTATGT
* * *
77523 GGTCCTTCGAGACAAATTCTACGC
1 GGTCCTTCGGGAC-AATTCTATGT
* * *
77547 AGTCCTTCTGGACAAATCTATGT
1 GGTCCTTCGGGACAATTCTATGT
77570 GG
1 GG
77572 CACTTCAGTG
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
23 19 0.51
24 18 0.49
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (23 bp):
GGTCCTTCGGGACAATTCTATGT
Found at i:77551 original size:24 final size:23
Alignment explanation
Indices: 77492--77563 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
77482 GAGTCGAGGG
*
77492 TTCTACGCGGTCATTCGGGAC-AA
1 TTCTACGCGGTCCTTC-GGACAAA
* *
77515 TTCTATGTGGTCCTTCGAGACAAA
1 TTCTACGCGGTCCTTCG-GACAAA
*
77539 TTCTACGCAGTCCTTCTGGACAAA
1 TTCTACGCGGTCCTTC-GGACAAA
77563 T
1 T
77564 CTATGTGGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 1 0.03
23 16 0.40
24 22 0.55
25 1 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (23 bp):
TTCTACGCGGTCCTTCGGACAAA
Found at i:77590 original size:24 final size:24
Alignment explanation
Indices: 77559--77616 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
77549 TCCTTCTGGA
*
77559 CAAA-TCTATGTGGCACTTCAGTG
1 CAAATTCTATGTGACACTTCAGTG
* * *
77582 CATATTCTACGTGACACTTCGGTG
1 CAAATTCTATGTGACACTTCAGTG
77606 CAAATTCTATG
1 CAAATTCTATG
77617 CATCAGTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (24 bp):
CAAATTCTATGTGACACTTCAGTG
Found at i:85650 original size:22 final size:20
Alignment explanation
Indices: 85606--85663 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
85596 TTCCTTGAAT
* *
85606 GTGTATCGATATACTCAAGA
1 GTGTACCGATATACTCAAAA
85626 GTGTACCGATATACACTCAAAA
1 GTGTACCGATAT--ACTCAAAA
* *
85648 GTGTACTGATACACTC
1 GTGTACCGATATACTC
85664 GTAGGGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 15 0.47
22 17 0.53
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (20 bp):
GTGTACCGATATACTCAAAA
Found at i:93088 original size:2 final size:2
Alignment explanation
Indices: 93081--93108 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
93071 GGGGATAAAG
93081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93109 CAAGGAAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95851 original size:24 final size:24
Alignment explanation
Indices: 95824--95875 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
95814 AGCCTATGGT
95824 ATCGATACAACTATGTAAAGTAGA
1 ATCGATACAACTATGTAAAGTAGA
*
95848 ATCGATACAACTATGTAAAGTAGT
1 ATCGATACAACTATGTAAAGTAGA
95872 ATCG
1 ATCG
95876 GTACCCCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (24 bp):
ATCGATACAACTATGTAAAGTAGA
Found at i:98864 original size:21 final size:21
Alignment explanation
Indices: 98828--98878 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
98818 CCGAAATAAT
* * * *
98828 AAAAAATTATTAATTTTATTC
1 AAAAAAATAATAATTTAATTA
*
98849 AATAAAATAATAATTTAATTA
1 AAAAAAATAATAATTTAATTA
98870 AAAAAAATA
1 AAAAAAATA
98879 TATATAAAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
AAAAAAATAATAATTTAATTA
Found at i:99369 original size:24 final size:24
Alignment explanation
Indices: 99307--99370 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
99297 GTTTAATATA
*
99307 ATAATCATTTTGATCCATATATTT
1 ATAATCATTTTGATTCATATATTT
*
99331 TTAATCATTTTGATTCATATATTT
1 ATAATCATTTTGATTCATATATTT
*
99355 ATAAACATTTTGATTC
1 ATAATCATTTTGATTC
99371 TCAATGATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.52
Consensus pattern (24 bp):
ATAATCATTTTGATTCATATATTT
Found at i:100348 original size:21 final size:21
Alignment explanation
Indices: 100324--100368 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
100314 AAAATAAAAT
100324 ATTAGAAAAAATATTAATCAA
1 ATTAGAAAAAATATTAATCAA
** *
100345 ATTATTAATAATATTAATCAA
1 ATTAGAAAAAATATTAATCAA
100366 ATT
1 ATT
100369 TCAATGCGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (21 bp):
ATTAGAAAAAATATTAATCAA
Found at i:100604 original size:17 final size:17
Alignment explanation
Indices: 100582--100667 Score: 66
Period size: 17 Copynumber: 4.9 Consensus size: 17
100572 AAATTTCAAT
100582 TAAAATTTTAATATTAA
1 TAAAATTTTAATATTAA
* **
100599 TAAAATTTTATATGTTTT
1 TAAAATTTTA-ATATTAA
* * *
100617 TAATATTAATCAAATTTTAA
1 TAAAATT--T-TAATATTAA
*
100637 TCAAATTTTAATATTAA
1 TAAAATTTTAATATTAA
100654 TAAAATTTT-ATATT
1 TAAAATTTTAATATT
100668 TATATGTTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
16 5 0.10
17 25 0.48
18 11 0.21
20 10 0.19
21 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (17 bp):
TAAAATTTTAATATTAA
Found at i:100636 original size:11 final size:11
Alignment explanation
Indices: 100622--100648 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
100612 GTTTTTAATA
100622 TTAATCAAATT
1 TTAATCAAATT
100633 TTAATCAAATT
1 TTAATCAAATT
100644 TTAAT
1 TTAAT
100649 ATTAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (11 bp):
TTAATCAAATT
Found at i:100649 original size:84 final size:83
Alignment explanation
Indices: 100504--100661 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 83
100494 ACGGATTTAA
* * *
100504 TTTAATATTAATAAAATTTTATATTTATATGTTTTTAAATTTTAATCAAATTATTAATAATATTA
1 TTTAATATTAATAAAATTTTATATTTATATATTATCAAATTTTAATCAAATTATT-ATAATATTA
*
100569 ATCAAATTTCAATTAAAAT
65 ATAAAATTTCAATTAAAAT
*
100588 TTTAATATTAATAAAATTTTATATGTTTTTAATATTAATCAAATTTTAATCAAA-T-TT-TAATA
1 TTTAATATTAATAAAATTTTATA--TTTAT-ATATT-ATCAAATTTTAATCAAATTATTATAATA
100650 TTAATAAAATTT
62 TTAATAAAATTT
100662 TATATTTATA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
84 39 0.60
86 6 0.09
87 5 0.08
88 15 0.23
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (83 bp):
TTTAATATTAATAAAATTTTATATTTATATATTATCAAATTTTAATCAAATTATTATAATATTAA
TAAAATTTCAATTAAAAT
Found at i:100655 original size:55 final size:55
Alignment explanation
Indices: 100560--100735 Score: 209
Period size: 55 Copynumber: 3.2 Consensus size: 55
100550 CAAATTATTA
*
100560 ATAATATTAATCAAATTTCAATTAAAATTTTAATATTAATAAAATTTTATATGTT-T
1 ATAATATTAATCAAATTTTAA-TAAAATTTTAATATTAATAAAATTTTATAT-TTAT
* *
100616 TTAATATTAATCAAATTTTAATCAAATTTTAATATTAATAAAATTTTATATTTAT
1 ATAATATTAATCAAATTTTAATAAAATTTTAATATTAATAAAATTTTATATTTAT
** * *
100671 ATGTTTTTAATCAAATTATTAATAAAATTTTAA-ATTAA-AATAATATTA-ATATTA-
1 ATAATATTAATCAAATT-TTAATAAAATTTTAATATTAATAA-AATTTTATAT-TTAT
100725 ATAATATTAAT
1 ATAATATTAAT
100736 ATTTATATGT
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
54 14 0.13
55 57 0.55
56 33 0.32
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (55 bp):
ATAATATTAATCAAATTTTAATAAAATTTTAATATTAATAAAATTTTATATTTAT
Found at i:100729 original size:15 final size:15
Alignment explanation
Indices: 100709--100738 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100699 TTTAAATTAA
100709 AATAATATTAATATT
1 AATAATATTAATATT
100724 AATAATATTAATATT
1 AATAATATTAATATT
100739 TATATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAATATTAATATT
Found at i:101086 original size:24 final size:24
Alignment explanation
Indices: 101059--101109 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
101049 TATTTAATTT
* *
101059 ATTTTTTGTGATTAGAATTTGATC
1 ATTTTTTATGACTAGAATTTGATC
* *
101083 ATTTTTTATTACTAGAATTTTATC
1 ATTTTTTATGACTAGAATTTGATC
101107 ATT
1 ATT
101110 AAATAATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.57
Consensus pattern (24 bp):
ATTTTTTATGACTAGAATTTGATC
Found at i:115634 original size:21 final size:21
Alignment explanation
Indices: 115609--115649 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
115599 CGGTGTAAAC
115609 TATGTGGTCA-TTCGGGACAAT
1 TATGT-GTCACTTCGGGACAAT
*
115630 TATGTGTCACTTCGGTACAA
1 TATGTGTCACTTCGGGACAA
115650 ATTACGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TATGTGTCACTTCGGGACAAT
Done.