genome.fa.s7504.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007504.1 Hibiscus syriacus cultivar Beakdansim tig00020813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97970

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6635--6718	5	16.4	5	71	18	57	73	1	7	17	1.12
6665--6725	20	3.2	18	82	15	70	75	0	3	21	0.94
6673--6742	12	5.5	12	80	16	79	72	0	5	21	1.05
6665--6742	25	3.0	25	92	7	122	73	0	5	21	1.03
6768--6810	18	2.4	18	92	0	68	72	0	6	20	1.08
7293--7474	86	2.1	86	81	8	210	57	5	2	34	1.36
8111--8150	2	20.0	2	100	0	80	50	0	0	50	1.00
12285--12334	24	2.2	23	85	7	66	58	4	6	32	1.41
14190--14262	20	3.7	20	83	0	101	39	19	23	17	1.92
14190--14281	40	2.3	41	94	1	159	40	17	23	18	1.91
14278--14384	20	5.3	20	81	6	108	30	26	18	24	1.98
14267--14404	41	3.4	41	78	6	145	34	23	17	24	1.96
14573--14616	22	2.0	22	95	0	79	22	43	13	20	1.87
14880--14917	20	1.9	20	88	0	58	13	15	21	50	1.78
16236--16280	18	2.5	18	88	0	72	26	44	15	13	1.83
16762--16828	20	3.4	20	81	2	73	38	23	22	14	1.92
16817--16873	14	3.8	14	78	17	69	49	24	15	10	1.76
16801--16891	32	2.8	33	93	3	157	48	21	17	12	1.80
16903--17011	19	5.7	19	82	4	112	14	20	22	42	1.88
16940--16981	20	2.1	20	90	0	66	16	21	21	40	1.91
16903--17011	39	2.8	38	77	2	112	14	20	22	42	1.88
18860--18894	14	2.5	14	85	0	52	31	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19013--19061	19	2.6	19	96	0	89	48	18	18	14	1.80
20173--20226	24	2.2	24	90	0	81	24	14	20	40	1.90
20402--20426	12	2.1	12	100	0	50	72	0	28	0	0.86
22718--22844	33	3.8	33	84	4	184	43	18	22	15	1.88
22719--22851	66	2.0	66	94	0	230	42	18	21	17	1.90
23007--23043	14	2.6	14	91	0	65	45	24	0	29	1.53
24403--24469	21	3.2	21	68	4	55	19	20	35	23	1.95
24403--24525	42	2.9	41	79	7	113	22	18	36	21	1.95
26576--26612	14	2.6	14	91	0	56	43	21	21	13	1.87
26553--26645	47	2.0	48	84	2	125	39	23	22	13	1.90
26636--26725	19	4.7	19	93	2	153	46	22	20	11	1.81
26636--26725	39	2.3	38	94	1	153	46	22	20	11	1.81
27318--27370	20	2.7	20	93	0	88	26	20	28	24	1.99
27339--27433	41	2.3	41	80	3	102	21	20	23	35	1.96
31172--31232	31	2.0	31	93	6	106	36	9	26	27	1.88
38169--38226	15	3.9	15	90	0	89	32	39	18	8	1.82
38231--38298	23	2.9	23	91	2	100	22	26	23	27	1.99
42559--42611	22	2.4	22	87	0	79	22	24	24	28	2.00
48188--48239	3	17.7	3	92	4	88	36	0	0	63	0.95
50780--50812	16	2.1	16	94	0	57	36	6	3	54	1.41
55333--55681	181	1.9	181	98	0	671	35	18	21	24	1.95
58397--58421	7	3.6	7	100	0	50	16	12	0	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61914--61980	9	7.6	9	76	17	61	76	1	13	8	1.09
61937--61989	15	3.6	15	87	12	83	75	0	13	11	1.05
61941--61989	14	3.4	14	81	13	64	77	0	12	10	0.99
62856--63203	136	2.6	135	88	4	519	34	18	21	25	1.96
62997--63643	332	2.0	331	88	2	958	37	16	20	25	1.93
72558--72635	38	2.1	38	95	0	138	33	16	10	39	1.83
84883--84935	27	2.0	27	88	3	81	52	0	0	47	1.00
86543--86622	3	26.7	3	85	9	110	65	0	0	35	0.93
86543--86622	36	2.2	36	93	0	133	65	0	0	35	0.93
86773--87490	113	6.3	116	80	10	303	28	18	14	38	1.90
86851--87519	113	5.9	113	84	7	790	29	18	13	37	1.90
86852--87519	228	2.9	227	84	7	865	29	19	13	38	1.90
88218--88437	114	1.9	114	87	0	323	30	20	14	34	1.92
89116--89254	9	16.6	9	81	14	104	1	14	0	84	0.70
89119--89253	19	7.1	18	83	15	150	1	13	0	85	0.67
89120--89252	28	4.6	29	86	11	177	1	13	0	84	0.68
89120--89253	46	2.8	46	85	9	182	1	13	0	85	0.68
89118--89234	1	117.0	1	74	0	99	0	11	0	87	0.60

Tables:   1

The End!