genome.fa.s7507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007507.1 Hibiscus syriacus cultivar Beakdansim tig00020823_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119216

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8117--8174	24	2.4	24	97	0	107	50	3	20	25	1.64
12300--12355	15	3.7	15	92	2	85	58	12	21	7	1.57
14329--14367	20	2.0	20	100	0	78	41	20	20	17	1.91
14334--14377	20	2.2	20	87	0	61	47	18	18	15	1.83
16203--16294	38	2.5	38	91	3	143	59	7	32	0	1.25
16868--16898	12	2.6	12	94	0	53	12	6	9	70	1.31
18717--18784	2	34.5	2	94	2	120	48	0	0	51	1.00
18832--18992	85	1.9	85	92	0	268	32	17	21	27	1.96
18832--19054	85	2.6	85	83	5	256	33	17	20	29	1.95
19046--19090	13	3.5	13	90	0	72	31	11	24	33	1.90
22674--22711	18	2.1	18	100	0	76	36	5	5	52	1.47
23055--23133	24	3.5	23	72	19	76	31	18	15	34	1.92
23055--23152	44	2.2	44	81	0	115	29	22	16	31	1.96
25545--25601	19	3.1	19	87	5	73	80	1	17	0	0.79
25545--25601	9	6.2	9	82	13	64	80	1	17	0	0.79
49243--49269	14	1.9	14	100	0	54	22	22	7	48	1.75
56953--57136	43	4.3	43	78	4	165	30	24	14	30	1.94
63750--63815	8	8.5	8	75	14	50	71	3	3	22	1.14
63767--63800	17	2.0	17	88	0	50	76	0	5	17	0.98
65009--65365	37	9.6	37	70	10	167	38	10	19	30	1.87
64882--65369	74	6.7	73	74	9	293	37	10	19	31	1.87
67091--67149	2	29.5	2	100	0	118	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72355--72469	47	2.4	47	98	0	221	24	27	9	38	1.86
72738--72866	67	1.9	66	88	1	195	27	17	13	41	1.87
73687--73926	104	2.3	105	79	0	248	33	20	18	27	1.96
74439--74471	3	11.0	3	100	0	66	33	0	0	66	0.92
82455--82485	16	1.9	16	100	0	62	29	12	12	45	1.80
83062--83140	29	2.8	27	79	11	79	58	2	3	35	1.30
83069--83140	26	2.6	29	78	17	80	59	2	2	34	1.26
83360--83421	28	2.2	28	100	0	124	59	9	11	19	1.58
83578--83606	11	2.5	12	94	5	51	75	6	6	10	1.17
84397--84466	32	2.2	32	84	0	86	30	18	12	38	1.88
89723--89811	32	2.8	32	82	0	115	34	19	10	35	1.85
93343--93367	13	1.9	13	100	0	50	20	0	0	80	0.72
93776--94019	2	137.0	2	70	27	160	42	0	2	54	1.19
93776--94019	27	9.2	27	75	20	175	42	0	2	54	1.19
93776--94019	84	3.0	82	82	13	272	42	0	2	54	1.19
98270--98451	54	3.4	54	87	3	269	37	17	15	28	1.91
108055--108341	2	156.0	2	72	20	209	41	1	1	56	1.17
108055--108341	39	7.0	41	77	15	224	41	1	1	56	1.17
108047--108341	45	7.1	43	77	13	239	41	1	1	55	1.17
111960--112152	100	2.0	95	90	5	305	31	10	17	40	1.83
117034--117071	14	2.7	14	95	0	67	36	26	26	10	1.89

Tables:   1

The End!