genome.fa.s7508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007508.1 Hibiscus syriacus cultivar Beakdansim tig00020837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109732

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333--409	18	4.6	18	75	15	74	16	49	20	12	1.79
338--416	31	2.5	31	85	6	115	17	46	20	15	1.83
1248--1282	18	1.9	18	88	0	52	54	0	17	28	1.43
3590--3644	22	2.5	22	90	0	83	18	30	25	25	1.98
11204--11235	16	2.0	16	93	0	55	34	25	6	34	1.81
18435--18476	16	2.6	16	81	7	50	54	14	7	23	1.64
18687--18785	48	2.1	48	86	0	135	49	21	9	20	1.76
33407--33470	33	1.9	33	100	0	128	40	6	7	45	1.58
33444--33484	21	2.0	21	85	4	57	43	0	7	48	1.30
37648--37679	10	3.1	11	91	8	50	46	0	0	53	1.00
49304--49336	14	2.3	15	85	15	52	72	6	0	21	1.05
50664--50716	27	2.0	27	92	3	90	39	0	9	50	1.35
53360--53416	11	5.3	11	73	12	55	56	0	1	42	1.10
60993--61044	21	2.5	21	81	3	61	38	19	25	17	1.93
61030--61107	41	1.9	41	89	0	120	38	23	15	23	1.92
61033--61126	20	4.7	20	80	7	91	32	25	17	24	1.96
61645--61725	19	4.5	19	73	16	73	46	24	17	11	1.80
61735--61822	33	2.6	33	92	1	140	11	25	25	38	1.89
61790--61847	20	2.9	20	80	10	64	13	24	18	43	1.87
63849--63971	42	2.9	42	80	2	122	23	36	17	22	1.94
65328--65363	14	2.6	14	95	0	63	30	0	25	44	1.54
65526--65652	33	3.9	32	85	8	175	14	22	19	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65561--65652	19	5.4	19	66	24	78	16	20	19	43	1.88
65519--65651	66	2.0	66	94	0	230	15	22	19	42	1.89
67943--67967	12	2.1	12	100	0	50	0	28	0	72	0.86
68142--68195	24	2.2	24	90	0	81	38	20	16	24	1.92
69232--69289	20	2.9	20	89	0	89	39	22	20	17	1.92
69308--69461	19	8.6	19	86	11	220	13	22	18	46	1.84
69308--69461	52	2.9	52	93	4	245	13	22	18	46	1.84
71453--71519	19	3.5	19	83	4	89	37	23	23	14	1.93
71508--71565	14	3.9	14	79	16	71	48	25	17	8	1.75
71492--71570	32	2.4	33	95	2	142	46	24	18	10	1.80
71593--71656	14	4.4	14	78	16	67	12	15	21	50	1.77
71582--71672	32	2.8	33	91	3	148	13	17	20	48	1.81
71656--71710	20	2.8	19	83	5	74	16	23	23	36	1.94
72188--72226	18	2.2	18	85	0	51	10	17	46	25	1.80
73744--73787	22	2.0	22	95	0	79	18	15	45	20	1.85
73955--74068	20	5.7	20	75	10	81	25	15	24	34	1.95
73994--74071	41	1.9	41	86	0	111	23	14	23	39	1.90
74060--74149	41	2.2	41	93	0	153	18	22	16	42	1.89
74057--74149	20	4.5	21	70	4	73	18	22	17	41	1.90
74458--74501	21	2.1	21	83	8	54	59	4	13	22	1.53
76012--76045	5	6.8	5	89	0	50	2	41	35	20	1.68
82181--82235	22	2.5	22	75	0	56	29	9	23	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89162--89186	2	12.5	2	100	0	50	52	0	0	48	1.00
92104--92253	75	2.0	75	86	0	210	40	13	18	27	1.88
93598--93645	17	2.9	17	84	6	64	45	12	0	41	1.42
97617--97649	16	2.0	17	88	5	50	18	18	12	51	1.76
99983--100174	65	3.0	64	80	11	205	26	18	22	32	1.97
107902--107926	2	12.5	2	100	0	50	48	0	52	0	1.00

Tables:   1

The End!