Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007509.1 Hibiscus syriacus cultivar Beakdansim tig00020859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104939

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
988--1054
32
2.1
32
83
5
82
32
1
37
28
1.66
5385--5443
31
1.9
31
82
6
75
32
1
32
33
1.68
22554--22622
36
1.9
36
96
0
129
27
40
1
30
1.65
22597--22632
13
2.8
13
95
0
63
25
41
0
33
1.55
22561--22668
48
2.2
49
85
1
137
26
37
2
32
1.71
23067--23107
6
6.7
6
83
5
55
80
2
17
0
0.82
23067--23107
19
2.2
18
86
4
55
80
2
17
0
0.82
23383--23416
17
2.0
17
100
0
68
35
29
0
35
1.58
27232--27279
19
2.6
19
87
9
64
2
18
6
72
1.15
27543--27579
16
2.2
17
90
4
58
64
0
13
21
1.27
29337--29401
27
2.4
28
80
12
80
61
10
16
10
1.56
29391--29420
5
6.2
5
92
7
53
80
0
20
0
0.72
31843--31868
13
2.0
13
100
0
52
38
0
30
30
1.58
37912--37980
33
2.1
33
83
5
86
30
36
1
31
1.67
41794--41862
33
2.1
33
83
5
86
30
36
1
31
1.67
42154--42270
36
3.2
36
93
1
198
32
35
4
27
1.76
42649--42696
12
4.1
11
80
19
53
77
2
18
2
0.97
48003--48091
11
7.8
11
69
23
51
32
37
1
29
1.65
48036--48104
33
2.1
33
86
5
95
31
36
0
31
1.58
52380--52483
33
3.1
33
82
9
95
30
36
1
30
1.69
57213--57254
21
2.1
19
86
8
57
33
11
0
54
1.37
58467--58570
35
3.0
34
83
5
111
30
4
37
26
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61457--61500
6
7.2
6
87
12
63
0
20
0
79
0.73
61457--61500
13
3.6
12
88
11
63
0
20
0
79
0.73
61457--61500
19
2.4
17
88
11
61
0
20
0
79
0.73
61702--61740
15
2.5
16
79
8
53
64
0
20
15
1.30
65624--65665
15
2.8
15
80
20
52
0
16
2
80
0.81
65860--65897
15
2.4
16
86
8
60
60
0
21
18
1.36
66033--66142
35
3.2
34
81
3
123
32
2
36
28
1.71
68306--68365
24
2.5
24
81
5
59
31
18
18
31
1.95
69777--69831
12
4.5
12
74
19
51
1
12
3
81
0.89
69787--69834
18
2.6
19
80
12
55
2
10
6
81
0.95
70023--70061
15
2.5
15
87
4
60
58
0
25
15
1.37
70195--70306
35
3.2
35
80
1
136
29
2
37
30
1.71
73941--73982
15
2.8
15
80
20
52
0
16
2
80
0.81
74186--74224
15
2.5
15
87
4
60
58
0
25
15
1.37
74734--74784
19
2.6
20
87
3
68
45
5
13
35
1.68
76485--76656
35
4.9
35
81
2
209
27
36
4
31
1.76
76484--76656
71
2.5
71
86
0
249
27
36
4
32
1.76
78518--78551
15
2.3
15
89
0
50
44
2
2
50
1.32
80108--80140
14
2.4
14
90
10
50
78
0
21
0
0.75
84316--84348
14
2.4
14
90
10
50
78
0
21
0
0.75
92728--92760
14
2.4
14
90
10
50
78
0
21
0
0.75

Tables:   1

The End!