Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000751.1 Hibiscus syriacus cultivar Beakdansim tig00001454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72346
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:2029 original size:17 final size:18
Alignment explanation
Indices: 2007--2040 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1997 AATTTATTGA
*
2007 TTAAATTATTT-AATTAT
1 TTAAATAATTTCAATTAT
2024 TTAAATAATTTCAATTA
1 TTAAATAATTTCAATTA
2041 AATTATATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAATAATTTCAATTAT
Found at i:2105 original size:15 final size:17
Alignment explanation
Indices: 2085--2123 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
2075 GATAATTAAA
2085 ATTATAT-AA-TTGTCT
1 ATTATATGAATTTGTCT
2100 ATTATATGAATTTGTCT
1 ATTATATGAATTTGTCT
2117 AGTTATA
1 A-TTATA
2124 ATATAATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.33
16 2 0.10
17 7 0.33
18 5 0.24
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (17 bp):
ATTATATGAATTTGTCT
Found at i:2346 original size:2 final size:2
Alignment explanation
Indices: 2339--2403 Score: 123
Period size: 2 Copynumber: 33.0 Consensus size: 2
2329 GCGTAATTGG
2339 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2380 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
2404 GATAATTATT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 61 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5653 original size:47 final size:48
Alignment explanation
Indices: 5602--5692 Score: 114
Period size: 47 Copynumber: 1.9 Consensus size: 48
5592 TCCGACTTGA
* * *
5602 ATTCTGTTCTGACA-CATTACCTGAATTCTG-TTTGATTTCTGATCTGG
1 ATTCTGTTATGACATC-TGACCTGAATTATGTTTTGATTTCTGATCTGG
* *
5649 ATTCTGTTATGATATCTGATCTGAATTATGTTTTGATTTCTGAT
1 ATTCTGTTATGACATCTGACCTGAATTATGTTTTGATTTCTGAT
5693 ATCTCCGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
47 23 0.62
48 14 0.38
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.48
Consensus pattern (48 bp):
ATTCTGTTATGACATCTGACCTGAATTATGTTTTGATTTCTGATCTGG
Found at i:5666 original size:24 final size:23
Alignment explanation
Indices: 5622--5692 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 23
5612 GACACATTAC
5622 CTGAATTCTGTTTGATTTCTGAT
1 CTGAATTCTGTTTGATTTCTGAT
* *
5645 CTGGATTCTGTTATGATATCTGAT
1 CTGAATTCTGTT-TGATTTCTGAT
*
5669 CTGAATTATGTTTTGATTTCTGAT
1 CTGAATTCTG-TTTGATTTCTGAT
5693 ATCTCCGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 11 0.27
24 28 0.68
25 2 0.05
ACGTcount: A:0.20, C:0.11, G:0.18, T:0.51
Consensus pattern (23 bp):
CTGAATTCTGTTTGATTTCTGAT
Found at i:7123 original size:25 final size:27
Alignment explanation
Indices: 7089--7138 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
7079 TTAGGAAAAG
* *
7089 AAAGCAATAAATTTCATT-TCCTTTCA
1 AAAGCAATAAAATACATTCTCCTTTCA
7115 AAAG-AATAAAATACATTCTCCTTT
1 AAAGCAATAAAATACATTCTCCTTT
7139 ACTAGTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (27 bp):
AAAGCAATAAAATACATTCTCCTTTCA
Found at i:10648 original size:18 final size:19
Alignment explanation
Indices: 10617--10654 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
10607 TAACTAGTTT
10617 TCTTGTGGTCATTAAAATG
1 TCTTGTGGTCATTAAAATG
*
10636 TCTT-TGGTGATTAAAATG
1 TCTTGTGGTCATTAAAATG
10654 T
1 T
10655 AGTACATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (19 bp):
TCTTGTGGTCATTAAAATG
Found at i:21895 original size:18 final size:18
Alignment explanation
Indices: 21872--21909 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
21862 CAACTTGATC
21872 GGTGGCATAGTTGAGCAG
1 GGTGGCATAGTTGAGCAG
21890 GGTGGCATAGTTGAGCAG
1 GGTGGCATAGTTGAGCAG
21908 GG
1 GG
21910 GGTCACAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.47, T:0.21
Consensus pattern (18 bp):
GGTGGCATAGTTGAGCAG
Found at i:24151 original size:2 final size:2
Alignment explanation
Indices: 24144--24196 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
24134 CTATGATTCA
24144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24186 AT AT AT AT AT A
1 AT AT AT AT AT A
24197 ATACTAATAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24379 original size:22 final size:21
Alignment explanation
Indices: 24353--24416 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
24343 ATATGAAATT
*
24353 TTGTCCCGAAGGACCTGTGAA
1 TTGTCCCGAAGGACCTATGAA
* * *
24374 TATGTCCCAAAGGACCTAAGAG
1 T-TGTCCCGAAGGACCTATGAA
*
24396 TTGTCCCGAAAGACCTATGAA
1 TTGTCCCGAAGGACCTATGAA
24417 ACCCTCGACT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAA
Found at i:24402 original size:21 final size:21
Alignment explanation
Indices: 24353--24412 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
24343 ATATGAAATT
* **
24353 TTGTCCCGAAGGACCTGTGAA
1 TTGTCCCAAAGGACCTAAGAA
*
24374 TATGTCCCAAAGGACCTAAGAG
1 T-TGTCCCAAAGGACCTAAGAA
24396 TTGTCCCGAAA-GACCTA
1 TTGTCCC-AAAGGACCTA
24413 TGAAACCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 13 0.39
22 20 0.61
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (21 bp):
TTGTCCCAAAGGACCTAAGAA
Found at i:30629 original size:46 final size:46
Alignment explanation
Indices: 30560--30651 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
30550 AAATAAGCAA
*
30560 AGCTTGTTATAAGTATAATAAAAAGTTTGCTGGTCAACATGGATAT
1 AGCTTGTTATAAGTATAACAAAAAGTTTGCTGGTCAACATGGATAT
30606 AGCTTGTTATAAGTATAACAAAAAGTTTGCTGGTCAACATGGATAT
1 AGCTTGTTATAAGTATAACAAAAAGTTTGCTGGTCAACATGGATAT
30652 TTCTTCTTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (46 bp):
AGCTTGTTATAAGTATAACAAAAAGTTTGCTGGTCAACATGGATAT
Found at i:40272 original size:21 final size:21
Alignment explanation
Indices: 40222--40273 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
40212 TTCTGACTAA
*
40222 CGCATTGCGATTTTTCAAATT
1 CGCATTGCGATTTTCCAAATT
* *
40243 CGCGTTGCGATTTTCCTAATT
1 CGCATTGCGATTTTCCAAATT
*
40264 CGCAATGCGA
1 CGCATTGCGA
40274 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (21 bp):
CGCATTGCGATTTTCCAAATT
Found at i:40288 original size:20 final size:20
Alignment explanation
Indices: 40263--40375 Score: 158
Period size: 20 Copynumber: 5.7 Consensus size: 20
40253 TTTTCCTAAT
40263 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
40283 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
40303 TCGAAATGCAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
40323 TCGCAATGCGAAT-C-TGACTA
1 TCGCAATGCGAATACGT-A-AA
*
40343 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
40363 TCGCAATGCGAAT
1 TCGCAATGCGAAT
40376 CTGACTATCG
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
18 1 0.01
19 2 0.02
20 77 0.94
21 1 0.01
22 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:40385 original size:20 final size:20
Alignment explanation
Indices: 40322--40429 Score: 137
Period size: 20 Copynumber: 5.4 Consensus size: 20
40312 AAATACGTAA
40322 ATCGCAATGCGAATCTGACT
1 ATCGCAATGCGAATCTGACT
* *
40342 ATCGCAATGCGAATATGTA-A
1 ATCGCAATGCGAATCTG-ACT
40362 ATCGCAATGCGAATCTGACT
1 ATCGCAATGCGAATCTGACT
* * *
40382 ATCGCAACGAGATTCTGACT
1 ATCGCAATGCGAATCTGACT
* *
40402 ATCGCAACGCGATTCTGACT
1 ATCGCAATGCGAATCTGACT
40422 ATCGCAAT
1 ATCGCAAT
40430 ACTGAATTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
19 1 0.01
20 75 0.97
21 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATCTGACT
Found at i:40386 original size:40 final size:40
Alignment explanation
Indices: 40263--40388 Score: 184
Period size: 40 Copynumber: 3.1 Consensus size: 40
40253 TTTTCCTAAT
*
40263 TCGCAATGCGAATACGTAAATCGCAATGCGAATAC-GTA-AA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAAT-CTG-ACTA
* *
40303 TCGAAATGCAAATACGTAAATCGCAATGCGAATCTGACTA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGACTA
*
40343 TCGCAATGCGAATATGTAAATCGCAATGCGAATCTGACTA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGACTA
40383 TCGCAA
1 TCGCAA
40389 CGAGATTCTG
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
39 2 0.03
40 76 0.97
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGACTA
Found at i:40386 original size:60 final size:60
Alignment explanation
Indices: 40282--40413 Score: 160
Period size: 60 Copynumber: 2.2 Consensus size: 60
40272 GAATACGTAA
* *
40282 ATCGCAATGCGAATACGTAAATCGAAATGCAAATACGTAAATCGCAATGCGAATCTGACT
1 ATCGCAATGCGAATACGTAAATCGAAATGCAAATACGTAAATCGCAACGAGAATCTGACT
* * * * *
40342 ATCGCAATGCGAATATGTAAATCGCAATGCGAAT-C-TGACTATCGCAACGAGATTCTGACT
1 ATCGCAATGCGAATACGTAAATCGAAATGCAAATACGT-A-AATCGCAACGAGAATCTGACT
*
40402 ATCGCAACGCGA
1 ATCGCAATGCGA
40414 TTCTGACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 1 0.02
59 2 0.03
60 59 0.95
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (60 bp):
ATCGCAATGCGAATACGTAAATCGAAATGCAAATACGTAAATCGCAACGAGAATCTGACT
Found at i:41297 original size:24 final size:24
Alignment explanation
Indices: 41270--41323 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
41260 GTAATCGAAA
*
41270 TTTGATCTTGGTCATTACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
41294 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
41318 TTTGAT
1 TTTGAT
41324 GATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:43761 original size:20 final size:20
Alignment explanation
Indices: 43736--43829 Score: 145
Period size: 20 Copynumber: 4.7 Consensus size: 20
43726 GACATTCATT
43736 TGACTATCGCAACGC-GAATA
1 TGACTATCGCAACGCGGAA-A
* *
43756 TGACTATCGCAACACGAAAA
1 TGACTATCGCAACGCGGAAA
*
43776 TGACTATTGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
43796 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
43816 TGACTATCGCAACG
1 TGACTATCGCAACG
43830 AGAGAATCGC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
20 65 0.97
21 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.18
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:43851 original size:33 final size:33
Alignment explanation
Indices: 43801--44030 Score: 139
Period size: 33 Copynumber: 6.8 Consensus size: 33
43791 GGAAATGACT
* **
43801 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
*
43835 ATCGCAATGCGAAATGAAAAGCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
43868 ATCGCAATACGAAAATGAAAATCGCAACGCGA-A
1 ATCGCAATGCG-AAATGAAAATCGCAACGAGAGA
** * ** * **
43901 A-CTAAATATGC-ATTATGTTGAAT-GCAAAAC-AAACT
1 ATC-GCA-ATGCGA-AATG-AAAATCGC--AACGAGAGA
** *
43936 ATCGCAACGTG-GAAATGACTATTGCAACGAGAGA
1 ATCGCAA--TGCGAAATGAAAATCGCAACGAGAGA
* *
43970 ATCGCAATGGGAAATGAAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
44003 ATCGCAAAGCGAAAATGAAAATCGCAAC
1 ATCGCAATGCG-AAATGAAAATCGCAAC
44031 ACGAAATTAG
Statistics
Matches: 149, Mismatches: 31, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
32 4 0.03
33 69 0.46
34 62 0.42
35 10 0.07
36 4 0.03
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:44016 original size:14 final size:14
Alignment explanation
Indices: 43985--44018 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
43975 AATGGGAAAT
*
43985 GAAAATCGCAACGA
1 GAAAATCGCAAAGA
*
43999 GAAAATCGCAAAGC
1 GAAAATCGCAAAGA
44013 GAAAAT
1 GAAAAT
44019 GAAAATCGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.18, G:0.21, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAAAGA
Found at i:44087 original size:14 final size:14
Alignment explanation
Indices: 44068--44121 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
44058 CATTTTCGCA
44068 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
44082 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
44099 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
44115 TTGCGAT
1 TTGCGAT
44122 AGTCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:44089 original size:34 final size:34
Alignment explanation
Indices: 44046--44141 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 34
44036 ATTAGTTTCG
44046 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
44080 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
** * *
44113 CGTTGCGATAGTCATTTCCGCGTTGCGAT
1 CGTTGCGATTTTCATTTTCGCATTGCGAT
44142 AGTCTGTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
Found at i:44266 original size:14 final size:14
Alignment explanation
Indices: 44247--44283 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
44237 CATCAATTAA
44247 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
44261 ACAAATCATCTTTT
1 ACAAATCAACATTT
44275 ACAAATCAA
1 ACAAATCAA
44284 TTAAACAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:45764 original size:42 final size:42
Alignment explanation
Indices: 45685--45777 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
45675 CCTCTTCAAC
* *
45685 GATGACAGTGGCCTCTTGAACGGTGGGAAGAGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAAGAGACTCTTGAGG
* * * **
45727 GATGATAGGGGCCTCTTGAACGATAGGGGAG-GCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-GGGAAGAGACTCTTGAGG
45769 GATGACAGG
1 GATGACAGG
45778 TGAGTCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 37 0.88
43 5 0.12
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAAGAGACTCTTGAGG
Found at i:46280 original size:20 final size:20
Alignment explanation
Indices: 46257--46481 Score: 246
Period size: 20 Copynumber: 11.4 Consensus size: 20
46247 GAAACTTAAA
46257 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
46277 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGAAAATGACT
*
46297 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
46317 ATCGCAATGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
46337 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
46357 ATCGCAA--CG-AGA-GA--
1 ATCGCAACGCGAAAATGACT
46371 ATCGCAATGCGCGAAAATGACT
1 ATCGCAA--CGCGAAAATGACT
46393 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
46413 ATATCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
46433 ATCACAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
** **
46453 ATCGCAATACGAATTTGACT
1 ATCGCAACGCGAAAATGACT
46473 ATCGCAACG
1 ATCGCAACG
46482 AGAGAATCGC
Statistics
Matches: 176, Mismatches: 21, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
14 7 0.04
16 2 0.01
17 1 0.01
18 4 0.02
19 2 0.01
20 153 0.87
22 7 0.04
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:46414 original size:76 final size:74
Alignment explanation
Indices: 46260--46441 Score: 193
Period size: 76 Copynumber: 2.4 Consensus size: 74
46250 ACTTAAAATC
* * * *
46260 GCAACGCGAAAATGACTATCGCAACACGGAAATGACTATCGCAACGCGGAAATGACTATCGCAAT
1 GCAACGCGAAAATGACTATCAC-A-AC-GAGA-GA--ATCGCAACGCGAAAATGACTATCGCAAC
* *
46325 GCGGAAATGACTATC
60 GCGAAAATGACTATA
* ** *
46340 GCAATGCGAATTTGACTATCGCAACGAGAGAATCGCAATGCGCGAAAATGACTATCGCAACGCGA
1 GCAACGCGAAAATGACTATCACAACGAGAGAATCGCAA--CGCGAAAATGACTATCGCAACGCGA
46405 AAATGACTATA
64 AAATGACTATA
*
46416 TCAACGCGAAAATGACTATCACAACG
1 GCAACGCGAAAATGACTATCACAACG
46442 CGAAAATGAC
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
74 7 0.08
76 55 0.63
77 3 0.03
78 2 0.02
79 1 0.01
80 19 0.22
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (74 bp):
GCAACGCGAAAATGACTATCACAACGAGAGAATCGCAACGCGAAAATGACTATCGCAACGCGAAA
ATGACTATA
Found at i:46468 original size:116 final size:116
Alignment explanation
Indices: 46256--46497 Score: 389
Period size: 116 Copynumber: 2.1 Consensus size: 116
46246 AGAAACTTAA
* * *
46256 AATCGCAA--CGCGAAAATGACTATCGCAACACGGAAATGACTATCGCAACGCGGAAATGACTAT
1 AATCGCAATGCGCGAAAATGACTATCGCAACACGAAAATGACTATAGCAACGCGAAAATGACTAT
* * * *
46319 CGCAATGCGGAAATGACTATCGCAATGCGAATTTGACTATCGCAACGAGAG
66 CACAACGCGAAAATGACTATCGCAATACGAATTTGACTATCGCAACGAGAG
* *
46370 AATCGCAATGCGCGAAAATGACTATCGCAACGCGAAAATGACTATATCAACGCGAAAATGACTAT
1 AATCGCAATGCGCGAAAATGACTATCGCAACACGAAAATGACTATAGCAACGCGAAAATGACTAT
46435 CACAACGCGAAAATGACTATCGCAATACGAATTTGACTATCGCAACGAGAG
66 CACAACGCGAAAATGACTATCGCAATACGAATTTGACTATCGCAACGAGAG
46486 AATCGCAATGCG
1 AATCGCAATGCG
46498 ATTTTCATTT
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 8 0.07
116 109 0.93
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (116 bp):
AATCGCAATGCGCGAAAATGACTATCGCAACACGAAAATGACTATAGCAACGCGAAAATGACTAT
CACAACGCGAAAATGACTATCGCAATACGAATTTGACTATCGCAACGAGAG
Found at i:46582 original size:14 final size:14
Alignment explanation
Indices: 46557--46600 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
46547 TGCGATAGTC
*
46557 ATTTTCGCGTTGCG
1 ATTTTCTCGTTGCG
* *
46571 ATTTTGTTGTTGCG
1 ATTTTCTCGTTGCG
46585 ATTTTCTCGTTGCG
1 ATTTTCTCGTTGCG
46599 AT
1 AT
46601 AGTCATTTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.09, C:0.16, G:0.25, T:0.50
Consensus pattern (14 bp):
ATTTTCTCGTTGCG
Found at i:46608 original size:68 final size:69
Alignment explanation
Indices: 46512--46641 Score: 219
Period size: 68 Copynumber: 1.9 Consensus size: 69
46502 TCATTTCGCA
*
46512 TTGCGATTCTTTCGTTGCGATAGTCATTTTCGCATTGCGATAGTCA-TTTTCGCGTTGCGATTTT
1 TTGCGATTCTTTCGTTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTTCGCATTGCGATTTT
46576 GTTG
66 GTTG
*
46580 TTGCGATT-TTCTCGTTGCGATAGTCATTTTCGCGTTGCGATAGTCATTTTTCGCATTGCGAT
1 TTGCGATTCTT-TCGTTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTTCGCATTGCGAT
46642 AGTAAACTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
67 2 0.03
68 42 0.72
69 14 0.24
ACGTcount: A:0.14, C:0.18, G:0.23, T:0.45
Consensus pattern (69 bp):
TTGCGATTCTTTCGTTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTTCGCATTGCGATTTT
GTTG
Found at i:46632 original size:21 final size:20
Alignment explanation
Indices: 46524--46644 Score: 125
Period size: 20 Copynumber: 5.6 Consensus size: 20
46514 GCGATTCTTT
46524 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
46544 CATTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* *
46564 CGTTGCGATTTTGTTGTTGCGATTTTCT
1 CGTTGCGA-----TAG-T-C-ATTTTCG
46592 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
46612 CGTTGCGATAGTCATTTTTCG
1 CGTTGCGATAGTCA-TTTTCG
*
46633 CATTGCGATAGT
1 CGTTGCGATAGT
46645 AAACTATTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
20 46 0.54
21 18 0.21
22 1 0.01
23 2 0.02
25 2 0.02
26 1 0.01
27 1 0.01
28 14 0.16
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:48626 original size:53 final size:54
Alignment explanation
Indices: 48545--48648 Score: 147
Period size: 53 Copynumber: 1.9 Consensus size: 54
48535 CGAAAATGAA
** **
48545 AATCGCAACACGAAAATGACTATCGCAACACGAATTTGACTATCACAACGCAAG
1 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCACAACGCAAG
* *
48599 AATCGCAACGCG-AAATGAAAATCGCAACACGAAAATGACTATCGCAACGC
1 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCACAACGC
48649 GAATTTGACT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 33 0.75
54 11 0.25
ACGTcount: A:0.43, C:0.26, G:0.16, T:0.14
Consensus pattern (54 bp):
AATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCACAACGCAAG
Found at i:48645 original size:73 final size:73
Alignment explanation
Indices: 48525--48699 Score: 296
Period size: 73 Copynumber: 2.4 Consensus size: 73
48515 TGAAACTTAA
*
48525 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACTATCA
1 AATCGCAACGCG-AAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACTATCA
48590 CAACGCAAG
65 CAACGCAAG
* *
48599 AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTGACTATCGC
1 AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACTATCAC
48664 AACGCAAG
66 AACGCAAG
* *
48672 AATCACAACGCGAAATGAAAATCACAAC
1 AATCGCAACGCGAAATGAAAATCGCAAC
48700 GACAGAATCG
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
73 85 0.89
74 11 0.11
ACGTcount: A:0.45, C:0.25, G:0.16, T:0.14
Consensus pattern (73 bp):
AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACACGAATTTGACTATCAC
AACGCAAG
Found at i:48657 original size:20 final size:19
Alignment explanation
Indices: 48526--48668 Score: 107
Period size: 20 Copynumber: 7.5 Consensus size: 19
48516 GAAACTTAAA
* **
48526 ATCGCAACACGAAAATGAAA
1 ATCGCAACGCG-AAATGACT
*
48546 ATCGCAACACGAAAATGACT
1 ATCGCAACGCG-AAATGACT
* *
48566 ATCGCAACACGAATTTGACT
1 ATCGCAACGCGAA-ATGACT
*
48586 ATCACAACGC--AA-GA--
1 ATCGCAACGCGAAATGACT
**
48600 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
*
48619 ATCGCAACACGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
48639 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAA-ATGACT
48659 ATCGCAACGC
1 ATCGCAACGC
48669 AAGAATCACA
Statistics
Matches: 103, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.09
16 4 0.04
17 2 0.02
18 1 0.01
19 14 0.14
20 73 0.71
ACGTcount: A:0.43, C:0.25, G:0.17, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:49070 original size:22 final size:22
Alignment explanation
Indices: 49036--49122 Score: 138
Period size: 22 Copynumber: 4.0 Consensus size: 22
49026 TGACCGTGAA
* *
49036 TGATTTCGCCGGAGATGGAGAT
1 TGATTTCGTCGGAGATGGGGAT
* *
49058 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAT
49080 TGATTTCGTCGGAGATGGGGAT
1 TGATTTCGTCGGAGATGGGGAT
49102 TGATTTCGTCGGAGATGGGGA
1 TGATTTCGTCGGAGATGGGGA
49123 CGGATGTTGC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 59 1.00
ACGTcount: A:0.21, C:0.11, G:0.40, T:0.28
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAT
Found at i:52471 original size:21 final size:21
Alignment explanation
Indices: 52447--52497 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
52437 ACAATATAAA
52447 TAGATGGAATCAAAGTGGAAG
1 TAGATGGAATCAAAGTGGAAG
*
52468 TAGATGGAATCGAAGTGGAAG
1 TAGATGGAATCAAAGTGGAAG
52489 TAGATGGAA
1 TAGATGGAA
52498 CGTGACCCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.41, C:0.04, G:0.35, T:0.20
Consensus pattern (21 bp):
TAGATGGAATCAAAGTGGAAG
Found at i:53067 original size:26 final size:26
Alignment explanation
Indices: 53031--53092 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
53021 TGGCTTGTCA
*
53031 CTTGGCTCAAGTTGAAAAGACTCTCC
1 CTTGGCTCAAGTTGAAAAGACTATCC
53057 CTTGGCTCAAGTTGAAAAGACTATCC
1 CTTGGCTCAAGTTGAAAAGACTATCC
*
53083 CTTGGTTCAA
1 CTTGGCTCAA
53093 ACTCATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTGGCTCAAGTTGAAAAGACTATCC
Found at i:66147 original size:20 final size:20
Alignment explanation
Indices: 66072--66148 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
66062 CAGTTTTCAA
*
66072 ATTTGTGAATTCGTAA-TTCG
1 ATTTTTGAATTCGTAACTT-G
* *
66092 ATTTTTGAATTTGCAACATTG
1 ATTTTTGAATTCGTAAC-TTG
** *
66113 A-TTTTGTTTTTGTAACTTG
1 ATTTTTGAATTCGTAACTTG
66132 ATTTTTGAATTCGTAAC
1 ATTTTTGAATTCGTAAC
66149 ACGAATTTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
19 4 0.09
20 37 0.82
21 2 0.04
22 2 0.04
ACGTcount: A:0.25, C:0.09, G:0.16, T:0.51
Consensus pattern (20 bp):
ATTTTTGAATTCGTAACTTG
Found at i:66164 original size:20 final size:19
Alignment explanation
Indices: 66141--66188 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
66131 GATTTTTGAA
*
66141 TTCGTAACACGAATTTTAAT
1 TTCGCAACACG-ATTTTAAT
*
66161 TTCGCAACA-GATTTTAGT
1 TTCGCAACACGATTTTAAT
66179 TTCGCAACAC
1 TTCGCAACAC
66189 AAATATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.64
19 1 0.04
20 8 0.32
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.35
Consensus pattern (19 bp):
TTCGCAACACGATTTTAAT
Found at i:67143 original size:23 final size:23
Alignment explanation
Indices: 67104--67148 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67094 GAAATTTGAA
67104 CTTGGTCAATACCCGGACTTTTAT
1 CTTGGTCAATACCCGGA-TTTTAT
*
67128 CTTGGTC-ATACTCGGATTTTA
1 CTTGGTCAATACCCGGATTTTA
67149 ATGATGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 7 0.35
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (23 bp):
CTTGGTCAATACCCGGATTTTAT
Found at i:69424 original size:17 final size:18
Alignment explanation
Indices: 69392--69426 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
69382 AAGCAAAAGG
69392 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
69410 AAATC-AAATCTCAATCA
1 AAATCAAAATCGCAATCA
69427 CAACCAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.54, C:0.23, G:0.03, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:71244 original size:21 final size:20
Alignment explanation
Indices: 71218--71311 Score: 82
Period size: 21 Copynumber: 4.5 Consensus size: 20
71208 TGTGAATCGG
*
71218 CTCTTGAACGGTAGGAGGGAC
1 CTCTTGAACGGT-GGAGGGGC
* *
71239 CTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTG-GAGGGGC
* *
71260 CTCTTGAATGGTGGGAGGGGT
1 CTCTTGAACGGT-GGAGGGGC
*
71281 CTCTTGAA-GGATGATAGGGGC
1 CTCTTGAACGG-TG-GAGGGGC
71302 CTCTTGAACG
1 CTCTTGAACG
71312 ATGACATGTG
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
20 4 0.07
21 53 0.90
22 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.37, T:0.23
Consensus pattern (20 bp):
CTCTTGAACGGTGGAGGGGC
Found at i:71277 original size:42 final size:42
Alignment explanation
Indices: 71218--71311 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
71208 TGTGAATCGG
71218 CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
* * ** * *
71260 CTCTTGAATGGTGGGAGGGGTCTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
71302 CTCTTGAACG
1 CTCTTGAACG
71312 ATGACATGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.21, C:0.18, G:0.37, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGGTAGGAGGGACCTCTTGAACGATGACAGGGGC
Found at i:71314 original size:21 final size:21
Alignment explanation
Indices: 71233--71317 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
71223 GAACGGTAGG
*
71233 AGGGACCTCTTGAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
* * **
71254 AGGGGCCTCTTGAATGGTGGG
1 AGGGGCCTCTTGAACGATGAC
* * *
71275 AGGGGTCTCTTGAAGGATGAT
1 AGGGGCCTCTTGAACGATGAC
71296 AGGGGCCTCTTGAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
71317 A
1 A
71318 TGTGAATTGT
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.22
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAC
Found at i:71676 original size:63 final size:63
Alignment explanation
Indices: 71606--71728 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
71596 CGTAGAGCGG
* * *
71606 CTACCTCATCACGTAAAG-TAGATACCTCACCACGTAAAGCACCATTGTCATCGCGTAAAGCCT
1 CTACCTCACCACGTAAAGATAG-TACCTCACCACGCAAAGCACCATTGTCATCACGTAAAGCCT
* * * * *
71669 CTACCTCACCACGTAAAGATCGTACCTCATCACGCCATGCACCATTGTCGTCACGTAAAG
1 CTACCTCACCACGTAAAGATAGTACCTCACCACGCAAAGCACCATTGTCATCACGTAAAG
71729 TACCGACCTC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 49 0.96
64 2 0.04
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (63 bp):
CTACCTCACCACGTAAAGATAGTACCTCACCACGCAAAGCACCATTGTCATCACGTAAAGCCT
Found at i:71738 original size:63 final size:63
Alignment explanation
Indices: 71608--71765 Score: 151
Period size: 63 Copynumber: 2.5 Consensus size: 63
71598 TAGAGCGGCT
* * * * *
71608 ACCTCATCACGTAAAG-TAGATACCTCACCACGTAAAGCACCATTGTCATCGCGTAAAGCCTCT
1 ACCTCATCACGTAAAGATAG-TACCTCATCACGCAAAGCACCATTGTCATCACGTAAAGACTCG
* * * * *
71671 ACCTCACCACGTAAAGATCGTACCTCATCACGCCATGCACCATTGTCGTCACGTAAAGTAC-CG
1 ACCTCATCACGTAAAGATAGTACCTCATCACGCAAAGCACCATTGTCATCACGTAAAG-ACTCG
* * *
71734 ACCTCTTCACGCAAAGCATTG-ACCTCATCACG
1 ACCTCATCACGTAAAG-ATAGTACCTCATCACG
71766 TAACTCCCCT
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
63 72 0.92
64 6 0.08
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.22
Consensus pattern (63 bp):
ACCTCATCACGTAAAGATAGTACCTCATCACGCAAAGCACCATTGTCATCACGTAAAGACTCG
Found at i:71743 original size:21 final size:21
Alignment explanation
Indices: 71719--71768 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
71709 ACCATTGTCG
* *
71719 TCACGTAAAGTACCGACCTCT
1 TCACGTAAAGCACCGACCTCA
* **
71740 TCACGCAAAGCATTGACCTCA
1 TCACGTAAAGCACCGACCTCA
71761 TCACGTAA
1 TCACGTAA
71769 CTCCCCTAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (21 bp):
TCACGTAAAGCACCGACCTCA
Done.