Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007510.1 Hibiscus syriacus cultivar Beakdansim tig00020879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108031

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5012--5069
24
2.4
24
100
0
116
60
0
32
6
1.23
6570--6613
2
23.0
2
90
9
74
47
0
0
52
1.00
7163--7648
26
21.0
26
67
22
282
20
22
10
46
1.81
7107--7192
43
2.0
41
84
6
118
24
19
11
44
1.84
7124--7616
71
7.1
72
71
17
404
20
22
10
46
1.81
7108--7434
117
2.8
114
74
15
341
20
22
11
45
1.83
7108--7648
46
11.8
46
81
6
618
20
21
10
46
1.81
7108--7648
91
5.9
90
78
9
553
20
21
10
46
1.81
10289--10332
2
22.0
2
100
0
88
50
0
0
50
1.00
12526--13172
46
14.2
46
87
1
899
21
20
10
47
1.80
12751--12792
20
2.1
21
86
8
61
21
23
4
50
1.68
12526--13172
137
4.7
138
87
1
933
21
20
10
47
1.80
12814--13184
20
16.0
26
65
21
193
22
19
10
47
1.80
13132--13187
25
2.2
24
87
9
85
23
14
8
53
1.68
15365--15415
20
2.4
21
87
6
68
33
11
27
27
1.92
16078--16162
23
3.8
23
87
3
111
28
15
28
28
1.96
16079--16170
46
2.0
44
85
8
123
27
15
28
29
1.96
32508--32582
23
3.4
22
78
7
80
28
17
26
28
1.98
33570--33595
13
2.0
13
100
0
52
23
46
15
15
1.83
35551--35842
82
3.6
82
85
1
390
35
17
11
35
1.86
35531--35884
164
2.1
167
85
4
468
35
18
10
36
1.85
43261--43291
14
2.2
14
94
0
53
3
16
0
80
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46275--46396
3
40.7
3
88
0
181
34
1
0
63
1.04
47722--47818
49
2.0
49
80
11
110
24
1
6
68
1.19
59189--59292
1
104.0
1
75
0
82
86
0
11
1
0.65
59186--59289
6
18.3
6
76
15
98
85
0
12
1
0.68
59186--59290
46
2.3
45
85
8
140
85
0
12
1
0.67
60230--61217
84
11.7
84
97
0
1852
27
15
22
34
1.94
60230--61217
253
3.9
252
97
0
1870
27
15
22
34
1.94
61856--62555
113
6.2
113
96
0
1031
37
13
19
29
1.90
62850--62963
3
37.7
3
87
1
156
32
1
0
65
1.03
64300--64350
19
2.8
18
82
8
68
19
1
5
72
1.15
79239--79473
6
38.8
6
85
1
236
31
31
18
18
1.95
79286--79501
6
36.0
6
85
0
90
33
26
16
23
1.96
79685--79824
74
1.9
74
83
0
181
41
19
17
22
1.90
82119--82259
38
3.6
38
74
14
108
40
3
6
49
1.45
84971--85093
57
2.2
57
87
0
174
33
13
15
38
1.86
85169--85201
12
2.8
12
95
0
57
45
9
24
21
1.80
94999--95048
21
2.2
23
83
16
61
60
8
12
20
1.57
95245--95292
24
2.0
24
100
0
96
25
20
20
33
1.97
98889--98927
6
6.5
6
87
0
51
33
23
0
43
1.54
99051--99111
23
2.7
23
86
0
86
34
24
19
21
1.96
104510--104634
23
5.4
23
68
9
85
32
24
21
21
1.98

Tables:   1

The End!