Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007511.1 Hibiscus syriacus cultivar Beakdansim tig00020894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143478

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3057--3089
16
2.1
16
100
0
66
30
18
27
24
1.98
21381--21406
5
5.2
5
100
0
52
0
19
57
23
1.40
34851--35613
247
3.0
255
87
3
1125
32
23
18
25
1.97
39021--39052
11
2.8
11
95
4
55
43
0
0
56
0.99
39048--39094
3
15.7
3
95
0
85
63
0
2
34
1.06
39411--39972
114
4.9
114
86
4
747
30
19
11
38
1.88
39412--39937
230
2.3
228
93
2
892
29
19
11
38
1.88
40313--41040
84
8.7
84
95
1
1252
35
22
13
28
1.92
42188--42246
10
5.7
10
86
6
82
1
10
0
88
0.60
42188--42248
21
3.0
20
83
4
86
1
11
0
86
0.63
42189--42238
1
50.0
1
83
0
64
0
8
0
92
0.40
52877--52939
32
1.9
34
83
6
85
60
1
6
31
1.31
55045--55076
11
2.8
11
95
4
55
43
0
0
56
0.99
55072--55124
3
17.7
3
96
0
97
64
0
1
33
1.05
63581--63606
13
2.0
13
100
0
52
61
15
0
23
1.33
63585--63658
23
2.8
26
78
11
73
55
8
0
36
1.30
64020--64076
29
2.0
29
89
0
87
29
19
17
33
1.95
64797--64850
28
2.0
26
82
13
65
59
5
0
35
1.21
81548--81577
15
2.0
15
93
0
51
33
23
13
30
1.93
82691--82715
13
1.9
13
100
0
50
36
0
0
64
0.94
86663--86712
27
2.0
25
88
11
75
52
16
4
28
1.61
86907--86937
12
2.6
12
100
0
62
16
41
32
9
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91228--91262
2
17.5
2
93
0
61
51
0
0
48
1.00
94235--94386
75
2.1
72
91
3
241
21
24
13
41
1.88
98130--98169
21
1.9
21
100
0
80
50
7
20
22
1.73
104324--104350
8
3.4
8
100
0
54
70
0
0
29
0.88
113767--113800
9
3.7
9
96
4
59
50
17
8
23
1.74
114306--114334
15
1.9
15
100
0
58
17
6
27
48
1.72
115698--115975
150
1.8
153
86
3
411
35
22
23
17
1.95
117022--117101
39
2.1
39
97
0
151
17
18
22
41
1.90
120015--120082
11
5.4
13
71
16
54
51
1
0
47
1.09
120028--120083
18
2.8
20
77
17
55
50
1
0
48
1.11
120011--120078
24
2.7
25
80
13
77
52
1
0
45
1.09
122500--122554
20
2.6
22
77
16
62
38
0
1
60
1.08
122504--122554
19
2.5
19
81
15
50
37
0
1
60
1.08
122652--122691
21
1.9
21
94
0
71
40
2
17
40
1.63
123130--123169
19
2.3
17
87
12
55
62
0
5
32
1.17
128961--129094
60
2.2
60
82
0
160
15
29
32
23
1.95
129730--129764
2
17.5
2
100
0
70
51
0
0
48
1.00
130243--130293
2
27.5
2
79
15
56
41
0
0
58
0.98
130291--130319
10
3.0
10
95
5
51
17
0
0
82
0.66
133388--133441
14
3.9
14
76
16
58
50
22
0
27
1.50
133450--133496
21
2.3
20
81
3
58
46
21
0
31
1.51
135716--135746
4
7.8
4
92
0
53
70
0
3
25
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137423--137460
15
2.6
15
87
4
51
39
2
0
57
1.12
142337--143096
6
132.0
6
87
11
1004
50
31
0
18
1.48

Tables:   1

The End!