Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007513.1 Hibiscus syriacus cultivar Beakdansim tig00020897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69420
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:605 original size:42 final size:40
Alignment explanation
Indices: 544--758 Score: 163
Period size: 41 Copynumber: 5.2 Consensus size: 40
534 GAGGCCTTAC
*
544 TTATAAAGGTAAAATGAGATTGAAAAAAAACTTAGGGTCTCAA
1 TTATAAAAGT-AAATGAGATTG--AAAAAACTTAGGGTCTCAA
* ***
587 TTATAAAAGT-AATCGAGATTGAAAAACCTTATGAACCTCAA
1 TTATAAAAGTAAAT-GAGATTGAAAAAACTTA-GGGTCTCAA
*
628 TTATAAAGGTAAATGAGATTGAAAAAACTTAAGGGTCTCAA
1 TTATAAAAGTAAATGAGATTGAAAAAACTT-AGGGTCTCAA
* *
669 TTATAAAATTAAAAAGTGAGATT-AAAAAAATTAGGAG-CTTC-A
1 TTATAAAAGT--AAA-TGAGATTGAAAAAACTTAGG-GTC-TCAA
* *
711 -T-TAAAGGTAAAATTGAGATTGAAAAAACTTAGAGGCCTCAA
1 TTATAAAAGT-AAA-TGAGATTGAAAAAACTTAG-GGTCTCAA
*
752 TTGTAAA
1 TTATAAA
759 GGTAGAAAAA
Statistics
Matches: 140, Mismatches: 17, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
39 11 0.08
40 27 0.19
41 51 0.36
42 17 0.12
43 27 0.19
44 7 0.05
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (40 bp):
TTATAAAAGTAAATGAGATTGAAAAAACTTAGGGTCTCAA
Found at i:852 original size:93 final size:96
Alignment explanation
Indices: 719--956 Score: 299
Period size: 93 Copynumber: 2.5 Consensus size: 96
709 CATTAAAGGT
* *
719 AAAATTGAGATTGAAAAAACTTAGAGGCCTCAATTGTAAAGGTAGAAAAACG-AGAAAGTGATAT
1 AAAATTGAGATT-AAAAAA-TTAGAGGCCTCAATTATAAAGGTAGAAAAACGTAGAAAGTGAGAT
*
783 TGAAAAAACTT-AAGAGCATCAATTATAAAGTTA
64 TAAAAAAACTTAAAG-GCATCAATTATAAAGTTA
* **
816 AAAATTG-GATTAAAAAATTAGAGG-CTCAATTATAAAGGT-GGAAATGGTAGAAAGTGAGATTA
1 AAAATTGAGATTAAAAAATTAGAGGCCTCAATTATAAAGGTAGAAAAACGTAGAAAGTGAGATTA
* *
878 AAAAAACTTAAAGGCCTTAATTATAAAGTTA
66 AAAAAACTTAAAGGCATCAATTATAAAGTTA
** *
909 AAAAGCGAGATTAAAAAATTAG-GTGCCTCAATTATAAAGGTAAAAAAA
1 AAAATTGAGATTAAAAAATTAGAG-GCCTCAATTATAAAGGTAGAAAAA
957 GGATTGAGAA
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
92 5 0.04
93 57 0.47
94 25 0.20
95 21 0.17
96 7 0.06
97 7 0.06
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.24
Consensus pattern (96 bp):
AAAATTGAGATTAAAAAATTAGAGGCCTCAATTATAAAGGTAGAAAAACGTAGAAAGTGAGATTA
AAAAAACTTAAAGGCATCAATTATAAAGTTA
Found at i:969 original size:42 final size:42
Alignment explanation
Indices: 891--972 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
881 AAACTTAAAG
* * **
891 GCCTTAATTATAAAGTTAAAAAGCGAGATTAAAAAATTAGGT
1 GCCTCAATTATAAAGGTAAAAAAAGAGATTAAAAAATTAGGT
*
933 GCCTCAATTATAAAGGTAAAAAAAG-GATTGAGAAAATTAG
1 GCCTCAATTATAAAGGTAAAAAAAGAGATT-AAAAAATTAG
973 AGACTTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (42 bp):
GCCTCAATTATAAAGGTAAAAAAAGAGATTAAAAAATTAGGT
Found at i:2257 original size:20 final size:20
Alignment explanation
Indices: 2232--2272 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
2222 AACACCCTAG
2232 ACCCAAAACTAAGCC-CAAAC
1 ACCCAAAA-TAAGCCTCAAAC
*
2252 ACCCAAAATATGCCTCAAAC
1 ACCCAAAATAAGCCTCAAAC
2272 A
1 A
2273 ACGTAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.49, C:0.37, G:0.05, T:0.10
Consensus pattern (20 bp):
ACCCAAAATAAGCCTCAAAC
Found at i:3691 original size:19 final size:20
Alignment explanation
Indices: 3667--3775 Score: 100
Period size: 19 Copynumber: 5.5 Consensus size: 20
3657 ATTTTCCTAT
3667 TCGCAATGC-AATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
3686 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
3706 TCGCAATGCGAATTA-GGAAA
1 TCGCAATGCGAA-TACGTAAA
* * *
3726 TCCACAATGCGATTACGT-AT
1 T-CGCAATGCGAATACGTAAA
* *
3746 TCGCATTGCGATTACGT-AA
1 TCGCAATGCGAATACGTAAA
*
3765 TCGCATTGCGA
1 TCGCAATGCGA
3776 TTTACGTAAC
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
19 35 0.46
20 29 0.38
21 12 0.16
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:3703 original size:20 final size:20
Alignment explanation
Indices: 3678--3990 Score: 325
Period size: 20 Copynumber: 15.6 Consensus size: 20
3668 CGCAATGCAA
*
3678 TACGTAAATCGCAATGCGA-T
1 TACGT-AATCGCATTGCGATT
* *
3698 TACGTAAATCGCAATGCGAAT
1 TACGT-AATCGCATTGCGATT
* * * *
3719 TAGGAAATCCACAATGCGA-T
1 TACGTAAT-CGCATTGCGATT
*
3739 TACGTATTCGCATTGCGA-T
1 TACGTAATCGCATTGCGATT
3758 TACGTAATCGCATTGCGATT
1 TACGTAATCGCATTGCGATT
*
3778 TACGTAACCGCATTGCGATT
1 TACGTAATCGCATTGCGATT
* *
3798 TTCCTAATTCGCATTGCGATT
1 TACGTAA-TCGCATTGCGATT
* * *
3819 TTCCTATTTCGCATTGCGATT
1 TACGTA-ATCGCATTGCGATT
3840 TACGTAATCGCA-TGCGATT
1 TACGTAATCGCATTGCGATT
* *
3859 TTCCTAATTCGCATTGCGATT
1 TACGTAA-TCGCATTGCGATT
3880 TACGTAATCGCATTGCGATT
1 TACGTAATCGCATTGCGATT
3900 TACGTAATCGCATTGCGA-T
1 TACGTAATCGCATTGCGATT
3919 TACGTAATCGCATTGCGATT
1 TACGTAATCGCATTGCGATT
* * *
3939 TTCCTAATTTGCACTT-CGATT
1 TACGTAA-TCGCA-TTGCGATT
3960 TACGTAATCGCATTGCGATT
1 TACGTAATCGCATTGCGATT
*
3980 CA-GTAATCGCA
1 TACGTAATCGCA
3991 ACGAGATTCT
Statistics
Matches: 254, Mismatches: 28, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
19 68 0.27
20 110 0.43
21 74 0.29
22 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (20 bp):
TACGTAATCGCATTGCGATT
Found at i:3862 original size:40 final size:40
Alignment explanation
Indices: 3625--3979 Score: 314
Period size: 40 Copynumber: 8.8 Consensus size: 40
3615 ATTCTGACTA
* *
3625 TCGCATTGCGATTT-CCTAAAATTCGCGTTGCGATTTTCCTAT
1 TCGCATTGCGATTTACGT--AA-TCGCATTGCGATTTTCCTAT
* * * * * *
3667 TCGCAATGC-A-ATACGTAAATCGCAATGCGA-TTACGTAAA
1 TCGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCT-AT
* * * * * * * *
3706 TCGCAATGCGAATTAGGAAATCCACAATGCGA-TTACGTAT
1 TCGCATTGCGATTTACGTAAT-CGCATTGCGATTTTCCTAT
* * *
3746 TCGCATTGCGA-TTACGTAATCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAT
* * *
3785 CCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTATT
1 TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTTCCTA-T
3827 TCGCATTGCGATTTACGTAATCGCA-TGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCT-AT
* * *
3867 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAA
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAT
3907 TCGCATTGCGA-TTACGTAATCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCT-AT
*
3947 TTGCACTT-CGATTTACGTAATCGCATTGCGATT
1 TCGCA-TTGCGATTTACGTAATCGCATTGCGATT
3980 CAGTAATCGC
Statistics
Matches: 264, Mismatches: 35, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
38 12 0.05
39 67 0.25
40 83 0.31
41 77 0.29
42 25 0.09
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (40 bp):
TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAT
Found at i:3973 original size:161 final size:159
Alignment explanation
Indices: 3626--3979 Score: 414
Period size: 161 Copynumber: 2.2 Consensus size: 159
3616 TTCTGACTAT
*
3626 CGCATTGCGATTT-CCTAAAATTCGCGTTGCGATTTTCCTATTCGCAATGCAATACGTAAATCGC
1 CGCATTGCGATTTACCT--AATTCGCATTGCGATTTTCCTATTCGCAATGCAATACGTAAATCGC
* * *
3690 AATGCGATTACGTAAATCGCAATGCGAATTAGGAAATCCACAATGCGATTACGTATTCGCATTGC
64 AATGCGATTACCTAAATCGCAATGCGAATTACGAAATCCACAATGCGATTACGTAATCGCATTGC
*
3755 GATTACGTAATCGCATTGCGATTTACGTAAC
129 GATTACGTAATCGCATTGCGATTTACCTAAC
* * *
3786 CGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTATTTCGCATTGCGATTTACGT-AATCG
1 CGCATTGCGATTTACCTAATTCGCATTGCGATTTTCCTA-TTCGCAATGC-A-ATACGTAAATCG
* * * * * * *
3850 C-ATGCGATTTTCCTAATTCGCATTGCGATTTACGTAAT-CGCATTGCGATTTACGTAATCGCAT
63 CAATGCGA-TTACCTAAATCGCAATGCGAATTACGAAATCCACAATGCGA-TTACGTAATCGCAT
* *
3913 TGCGATTACGTAATCGCATTGCGATTTTCCTAATT
126 TGCGATTACGTAATCGCATTGCGATTTACCTAA-C
* *
3948 TGCACTT-CGATTTACGTAA-TCGCATTGCGATT
1 CGCA-TTGCGATTTACCTAATTCGCATTGCGATT
3980 CAGTAATCGC
Statistics
Matches: 167, Mismatches: 19, Indels: 15
0.83 0.09 0.07
Matches are distributed among these distances:
159 21 0.13
160 36 0.22
161 90 0.54
162 18 0.11
163 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (159 bp):
CGCATTGCGATTTACCTAATTCGCATTGCGATTTTCCTATTCGCAATGCAATACGTAAATCGCAA
TGCGATTACCTAAATCGCAATGCGAATTACGAAATCCACAATGCGATTACGTAATCGCATTGCGA
TTACGTAATCGCATTGCGATTTACCTAAC
Found at i:4881 original size:23 final size:22
Alignment explanation
Indices: 4831--4883 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
4821 CAGTATTCAA
4831 ATTTGATCTTGGTCATACCCGG
1 ATTTGATCTTGGTCATACCCGG
**
4853 ACTTTGATCTTGGTCAATACTTGG
1 A-TTTGATCTTGGTC-ATACCCGG
4877 ATTTGAT
1 ATTTGAT
4884 GATTTTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 1 0.04
23 19 0.70
24 7 0.26
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.42
Consensus pattern (22 bp):
ATTTGATCTTGGTCATACCCGG
Found at i:7377 original size:20 final size:19
Alignment explanation
Indices: 7349--7403 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
7339 CAATCATCTT
*
7349 AATGTCTATCGCAACGCGGA
1 AATGACTATCGCAACGC-GA
*
7369 AATGACTATCGCAATGCGA
1 AATGACTATCGCAACGCGA
**
7388 AATGAAAATCGCAACG
1 AATGACTATCGCAACG
7404 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (19 bp):
AATGACTATCGCAACGCGA
Found at i:7391 original size:19 final size:20
Alignment explanation
Indices: 7310--7403 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 20
7300 GGCATTCATT
*
7310 TGACTATCGCAACACGGAAA
1 TGACTATCGCAACGCGGAAA
* **
7330 TGACGT-TCGCAATCATC-TTAA
1 TGAC-TATCGCAA-C-GCGGAAA
*
7351 TGTCTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
*
7371 TGACTATCGCAATGC-GAAA
1 TGACTATCGCAACGCGGAAA
**
7390 TGAAAATCGCAACG
1 TGACTATCGCAACG
7404 AGAGAATCGC
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
19 16 0.28
20 27 0.47
21 13 0.23
22 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.21
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:7418 original size:33 final size:32
Alignment explanation
Indices: 7376--7467 Score: 141
Period size: 31 Copynumber: 2.9 Consensus size: 32
7366 GGAAATGACT
7376 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACG-GAGA
*
7409 ATCGCAATGCGAAATAAAAATCGCAAC-GAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGGAGA
* *
7440 ATCGTAATACGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
7468 CGAATTTAGT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
31 28 0.52
33 26 0.48
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (32 bp):
ATCGCAATGCGAAATGAAAATCGCAACGGAGA
Found at i:7432 original size:19 final size:19
Alignment explanation
Indices: 7356--7434 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 19
7346 CTTAATGTCT
* **
7356 ATCGCAACGCGGAAATGACT
1 ATCGCAATGC-GAAATGAAA
7376 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7395 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
7409 ATCGCAATGCGAAATAAAA
1 ATCGCAATGCGAAATGAAA
7428 ATCGCAA
1 ATCGCAA
7435 CGAGAATCGT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.21
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 23 0.48
20 9 0.19
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7494 original size:19 final size:19
Alignment explanation
Indices: 7467--7511 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
7457 AAATCGCAAC
* *
7467 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCATT
*
7486 GTGATTTTAGTTTCGCATT
1 GCGATTTTAGTTTCGCATT
7505 GCGATTT
1 GCGATTT
7512 GTCGTTGCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.47
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCATT
Found at i:7555 original size:33 final size:32
Alignment explanation
Indices: 7477--7574 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 32
7467 GCGAATTTAG
* *
7477 TTTCGCGTTGTGATTTT-AGTTTCGCATTGCGA
1 TTTCTCGTTGCGATTTTCA-TTTCGCATTGCGA
* * *
7509 TTTGTCGTTGCGATTTTCATTTTGCGTTGCGA
1 TTTCTCGTTGCGATTTTCATTTCGCATTGCGA
7541 TTCTCTCGTTGCGATTTTCATTTCGCATTGCGA
1 TT-TCTCGTTGCGATTTTCATTTCGCATTGCGA
7574 T
1 T
7575 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
32 27 0.48
33 29 0.52
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.48
Consensus pattern (32 bp):
TTTCTCGTTGCGATTTTCATTTCGCATTGCGA
Found at i:7571 original size:19 final size:18
Alignment explanation
Indices: 7516--7574 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 18
7506 CGATTTGTCG
*
7516 TTGCGATTTTCATTTTGC
1 TTGCGATTTTCATTTCGC
*
7534 GTTGCGA--TTC-TCTCG-
1 -TTGCGATTTTCATTTCGC
7549 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
7567 ATTGCGAT
1 -TTGCGAT
7575 AGTCATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.19
16 6 0.19
17 7 0.22
19 13 0.41
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.47
Consensus pattern (18 bp):
TTGCGATTTTCATTTCGC
Found at i:7700 original size:14 final size:14
Alignment explanation
Indices: 7681--7717 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7671 CATTAATTAA
7681 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
7695 ACAAATCATCTTTT
1 ACAAATCAACTTTT
7709 ACAAATCAA
1 ACAAATCAA
7718 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:9598 original size:20 final size:19
Alignment explanation
Indices: 9567--9650 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
9557 TCTGGAACTT
* *
9567 AAAATCGAAACGTGAAAATG
1 AAAATCGCAACGCG-AAATG
**
9587 ACTATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
9606 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
* *
9620 AGAATCGCAATGCGAAATG
1 AAAATCGCAACGCGAAATG
9639 AAAATCGCAACG
1 AAAATCGCAACG
9651 ACAAAATCGC
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 24 0.48
20 10 0.20
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:9635 original size:33 final size:33
Alignment explanation
Indices: 9590--9677 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
9580 GAAAATGACT
* *
9590 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
*
9623 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
9656 ATCGCAACGCGAAACT-AAAATC
1 ATCGCAACGCGAAA-TGAAAATC
9678 CCATACGATA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 49 0.98
34 1 0.02
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:9677 original size:19 final size:18
Alignment explanation
Indices: 9622--9677 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
9612 GCAACGAGAG
9622 AATCGCAATGCGAAA-TGAA
1 AATCGCAA-GCGAAACT-AA
9641 AATCGCAA-CG--AC-AA
1 AATCGCAAGCGAAACTAA
9655 AATCGCAACGCGAAACTAA
1 AATCGCAA-GCGAAACTAA
9674 AATC
1 AATC
9678 CCATACGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
14 10 0.32
15 1 0.03
16 2 0.06
17 2 0.06
18 2 0.06
19 14 0.45
ACGTcount: A:0.48, C:0.23, G:0.16, T:0.12
Consensus pattern (18 bp):
AATCGCAAGCGAAACTAA
Found at i:9720 original size:19 final size:19
Alignment explanation
Indices: 9696--9775 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
9686 TATACGTTAG
9696 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
9715 TTTCGCGTTGCGATTTTCG
1 TTTCGCGTTGCGATTTTCA
9734 TTTCGCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTCA
*
9752 TTCTCTCGTTGCGATTTTCA
1 TT-TCGCGTTGCGATTTTCA
9772 TTTC
1 TTTC
9776 AACCAAAGAC
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
18 6 0.11
19 43 0.77
20 7 0.12
ACGTcount: A:0.09, C:0.23, G:0.20, T:0.49
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:9966 original size:93 final size:92
Alignment explanation
Indices: 9863--10138 Score: 383
Period size: 93 Copynumber: 3.1 Consensus size: 92
9853 ATTGATTGCA
* *
9863 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAA-TTCAGAGTATTAAAGAATACACAGTT
1 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
9927 TAGCAGAATTGGCAGCAAACGAATAAAT
66 TAGCAGAATTGGCAGC-AACGAATAAAT
9955 TTACTTTCAACC-AAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
10019 TTAGCAGAATTGGCAGCAAC---CAAAT
65 TTAGCAGAATTGGCAGCAACGAATAAAT
*
10044 ATACTTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAATA-AAT----AG
1 TTACTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAA-AGAATACACAG
* *
10104 TTTAGCAGTATTAGCAGCAACTGAATAAAT
64 TTTAGCAGAATTGGCAGCAAC-GAATAAAT
10134 TTACT
1 TTACT
10139 AAGCAATCTA
Statistics
Matches: 167, Mismatches: 8, Indels: 20
0.86 0.04 0.10
Matches are distributed among these distances:
86 21 0.13
88 7 0.04
89 18 0.11
90 40 0.24
91 1 0.01
92 33 0.20
93 47 0.28
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (92 bp):
TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACGAATAAAT
Found at i:11846 original size:17 final size:17
Alignment explanation
Indices: 11824--11909 Score: 88
Period size: 17 Copynumber: 5.1 Consensus size: 17
11814 TTTGGTTGAA
11824 ATGAAAATCGCAACGAG
1 ATGAAAATCGCAACGAG
*
11841 ATGAAAATCGCAACGGAA
1 ATGAAAATCGCAAC-GAG
**
11859 ATGACTATCGCAACGAG
1 ATGAAAATCGCAACGAG
*
11876 A-G--AATCGCAACACGAA
1 ATGAAAATCGC-A-ACGAG
11892 ATGAAAATCGCAACGAG
1 ATGAAAATCGCAACGAG
11909 A
1 A
11910 GAATCGCAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
14 5 0.09
15 1 0.02
16 6 0.11
17 23 0.41
18 15 0.27
19 6 0.11
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.12
Consensus pattern (17 bp):
ATGAAAATCGCAACGAG
Found at i:11884 original size:14 final size:14
Alignment explanation
Indices: 11865--11918 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
11855 GGAAATGACT
11865 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
11879 ATCGCAACACGAAATGAAA
1 ATCGC-A-ACG--A-GAGA
11898 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
11912 ATCGCAA
1 ATCGCAA
11919 TGCGATTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 15 0.45
15 2 0.06
16 3 0.09
17 3 0.09
18 2 0.06
19 8 0.24
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.09
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:11902 original size:33 final size:32
Alignment explanation
Indices: 11821--11918 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 32
11811 TCTTTTGGTT
*
11821 GAAATGAAAATCGCAACGAGATGAAAATCGCAACG
1 GAAATGAAAATCGCAACGAGA-G--AATCGCAACC
**
11856 GAAATGACTATCGCAACGAGAGAATCGCAACAC
1 GAAATGAAAATCGCAACGAGAGAATCGCAAC-C
11889 GAAATGAAAATCGCAACGAGAGAATCGCAA
1 GAAATGAAAATCGCAACGAGAGAATCGCAA
11919 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 9 0.16
33 28 0.49
34 1 0.02
35 19 0.33
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.11
Consensus pattern (32 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACC
Found at i:11967 original size:33 final size:33
Alignment explanation
Indices: 11919--12011 Score: 114
Period size: 33 Copynumber: 2.8 Consensus size: 33
11909 AGAATCGCAA
** *
11919 TGCGATTTTGGTTTCGTGTTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
*
11952 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
* **
11985 TGTGATAGTCATTTCCGCGTTGCGATT
1 TGCGATTTTCATTT-CGCGTTGCGATT
12012 TTCATTCTCG
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
33 40 0.77
34 12 0.23
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
Found at i:12577 original size:20 final size:20
Alignment explanation
Indices: 12554--12647 Score: 125
Period size: 20 Copynumber: 4.7 Consensus size: 20
12544 CGATAGTCAG
*
12554 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACCT
*
12574 ATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACCT
*
12594 AATTCGCATTGCGATTTTCCT
1 -ATTCGCATTGCGATTTACCT
* * *
12615 AATCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACCT
12635 ATTCGCATTGCGA
1 ATTCGCATTGCGA
12648 ATTAGGAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
20 45 0.69
21 20 0.31
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACCT
Found at i:12604 original size:41 final size:40
Alignment explanation
Indices: 12554--12647 Score: 125
Period size: 41 Copynumber: 2.3 Consensus size: 40
12544 CGATAGTCAG
* * *
12554 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACCTAATCGCATTGCGATTTACCT
* * *
12594 AATTCGCATTGCGATTTTCCTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACCTAATCGCATTGCGATTTACCT
12635 ATTCGCATTGCGA
1 ATTCGCATTGCGA
12648 ATTAGGAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 13 0.28
41 34 0.72
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACCTAATCGCATTGCGATTTACCT
Found at i:12668 original size:21 final size:21
Alignment explanation
Indices: 12644--12689 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
12634 TATTCGCATT
12644 GCGAATTAGGA-AAATCGCAAC
1 GCGAATT-GGAGAAATCGCAAC
* *
12665 GCGAATTTGAGAAATCGCAAT
1 GCGAATTGGAGAAATCGCAAC
12686 GCGA
1 GCGA
12690 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTGGAGAAATCGCAAC
Found at i:12935 original size:23 final size:22
Alignment explanation
Indices: 12890--12935 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
12880 CAAACCAAGA
*
12890 TAAAATTATTGATTTTATAATT
1 TAAAATTATTGATTTAATAATT
* *
12912 TAAATTTATTTGATTTAATTATT
1 TAAAATTA-TTGATTTAATAATT
12935 T
1 T
12936 TTTCCAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (22 bp):
TAAAATTATTGATTTAATAATT
Found at i:13238 original size:18 final size:19
Alignment explanation
Indices: 13209--13254 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
13199 AATTTATGCA
13209 AGAAAA-ATAAACTATA-T
1 AGAAAATATAAACTATAGT
*
13226 AGAAAATATAAACTGTAGT
1 AGAAAATATAAACTATAGT
13245 A-AAAATATAA
1 AGAAAATATAA
13255 GATTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 2 0.08
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (19 bp):
AGAAAATATAAACTATAGT
Found at i:17308 original size:13 final size:13
Alignment explanation
Indices: 17277--17340 Score: 76
Period size: 13 Copynumber: 5.0 Consensus size: 13
17267 GTCATAAGTC
*
17277 TATGACGCGCCTT
1 TATGACGCGCATT
* *
17290 TGTGACACGCATT
1 TATGACGCGCATT
**
17303 TATGAC-AACATT
1 TATGACGCGCATT
17315 TATGACGCGCATT
1 TATGACGCGCATT
17328 TATGACGCGCATT
1 TATGACGCGCATT
17341 GAGCGTCATT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
12 10 0.24
13 32 0.76
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:21583 original size:2 final size:2
Alignment explanation
Indices: 21576--21604 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21566 GGTAACCTAT
21576 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21605 TGTAGGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22340 original size:4 final size:4
Alignment explanation
Indices: 22331--22355 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
22321 CTTTAAATTA
22331 TTAG TTAG TTAG TTAG TTAG TTAG T
1 TTAG TTAG TTAG TTAG TTAG TTAG T
22356 GGGCATAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TTAG
Found at i:23685 original size:14 final size:14
Alignment explanation
Indices: 23663--23696 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
23653 AATACGCTAT
*
23663 TTTAATATAAAATA
1 TTTATTATAAAATA
23677 TTTATTATAAAATA
1 TTTATTATAAAATA
23691 TTTATT
1 TTTATT
23697 TGATTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTATTATAAAATA
Found at i:25000 original size:19 final size:19
Alignment explanation
Indices: 24964--25001 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24954 CATTAGTATC
*
24964 AAATCATTAAATATTTCGA
1 AAATCATTAAATAATTCGA
24983 AAATCATT-AATAAATTCGA
1 AAATCATTAAAT-AATTCGA
25002 CTATGTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (19 bp):
AAATCATTAAATAATTCGA
Found at i:25122 original size:14 final size:14
Alignment explanation
Indices: 25103--25139 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
25093 ATTAAATTAT
25103 ATTATAATTTCATG
1 ATTATAATTTCATG
*
25117 ATTATAATTTCATT
1 ATTATAATTTCATG
25131 ATTAGTAAT
1 ATTA-TAAT
25140 CATTAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (14 bp):
ATTATAATTTCATG
Found at i:25162 original size:13 final size:11
Alignment explanation
Indices: 25131--25168 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 11
25121 TAATTTCATT
25131 ATTAGT-AATC
1 ATTAGTAAATC
25141 ATTAGTAAATC
1 ATTAGTAAATC
25152 ATTAGTTTAAATC
1 ATTAG--TAAATC
25165 ATTA
1 ATTA
25169 AATATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 6 0.24
11 9 0.36
13 10 0.40
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (11 bp):
ATTAGTAAATC
Found at i:25231 original size:23 final size:23
Alignment explanation
Indices: 25126--25278 Score: 107
Period size: 23 Copynumber: 6.5 Consensus size: 23
25116 GATTATAATT
* *
25126 TCATTATTAGT-AATCATTAGTAAA
1 TCATTATTATTAAATCATTA-T-TA
* *
25150 TCATTAGT-TTAAATCATTA-AA
1 TCATTATTATTAAATCATTATTA
* *
25171 T-ATTAATAATAAATCATTATTA
1 TCATTATTATTAAATCATTATTA
*
25193 TCATATCATTACTAAATCATTATTA
1 TCAT-T-ATTATTAAATCATTATTA
*
25218 TCATTATTATTAAATAATTATTATAA
1 TCATTATTATTAAATCATTA-T-T-A
* *
25244 TGATTATTACTAAATCATTATTA
1 TCATTATTATTAAATCATTATTA
* *
25267 TAATGATTATTA
1 TCATTATTATTA
25279 TCAAATCATT
Statistics
Matches: 105, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
20 5 0.05
21 13 0.12
22 2 0.02
23 26 0.25
24 19 0.18
25 22 0.21
26 18 0.17
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (23 bp):
TCATTATTATTAAATCATTATTA
Found at i:25240 original size:26 final size:26
Alignment explanation
Indices: 25211--25298 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 26
25201 TTACTAAATC
*
25211 ATTATTATCATTATTATTAAATAATT
1 ATTATAATCATTATTATTAAATAATT
* * *
25237 ATTATAATGATTATTACTAAATCATT
1 ATTATAATCATTATTATTAAATAATT
* * *
25263 ATTATAATGATTATTATCAAATCATT
1 ATTATAATCATTATTATTAAATAATT
*
25289 ACTA-AATCAT
1 ATTATAATCAT
25299 CAAATCATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
25 5 0.09
26 49 0.91
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (26 bp):
ATTATAATCATTATTATTAAATAATT
Found at i:25302 original size:19 final size:18
Alignment explanation
Indices: 25278--25474 Score: 86
Period size: 19 Copynumber: 11.1 Consensus size: 18
25268 AATGATTATT
25278 ATCAAATCATTACTAAATC
1 ATCAAATCATTA-TAAATC
25297 ATCAAATCA-T-TAAAT-
1 ATCAAATCATTATAAATC
*
25312 ATTAAAATCATTATTAAATC
1 A-TCAAATCATTA-TAAATC
25332 AT----T-ATTATCAAATC
1 ATCAAATCATTAT-AAATC
25346 ATTACTAAATCA-T-TAAAT-
1 A-T-C-AAATCATTATAAATC
*
25364 ATTAAAATCATTACTAAATC
1 A-TCAAATCATTA-TAAATC
*
25384 ATCAAATC-GT-TAAAT-
1 ATCAAATCATTATAAATC
*
25399 ATTAAAATCATTACTAAATC
1 A-TCAAATCATTA-TAAATC
*
25419 ATCAAATTA-T-TAAAT-
1 ATCAAATCATTATAAATC
* *
25434 ATTAAAAACATTACTAAATC
1 A-TCAAATCATTA-TAAATC
25454 ATCAAATCATTATTAAATC
1 ATCAAATCATTA-TAAATC
25473 AT
1 AT
25475 TTTTATGGTT
Statistics
Matches: 136, Mismatches: 14, Indels: 56
0.66 0.07 0.27
Matches are distributed among these distances:
13 1 0.01
14 10 0.07
15 5 0.04
16 39 0.29
17 4 0.03
18 6 0.04
19 63 0.46
20 5 0.04
21 2 0.01
22 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.36
Consensus pattern (18 bp):
ATCAAATCATTATAAATC
Found at i:25319 original size:8 final size:9
Alignment explanation
Indices: 25281--25475 Score: 72
Period size: 8 Copynumber: 20.9 Consensus size: 9
25271 GATTATTATC
25281 AAATCATTA
1 AAATCATTA
*
25290 CTAAATCA-TC
1 --AAATCATTA
25300 AAATCATT-
1 AAATCATTA
25308 AAAT-ATTA
1 AAATCATTA
25316 AAATCATTA
1 AAATCATTA
25325 TTAAATCATTATTA
1 --AAATC---ATTA
25339 TCAAATCATTA
1 --AAATCATTA
25350 CTAAATCATT-
1 --AAATCATTA
25360 AAAT-ATTA
1 AAATCATTA
25368 AAATCATTA
1 AAATCATTA
*
25377 CTAAATCA-TC
1 --AAATCATTA
*
25387 AAATCGTT-
1 AAATCATTA
25395 AAAT-ATTA
1 AAATCATTA
25403 AAATCATTA
1 AAATCATTA
*
25412 CTAAATCA-TC
1 --AAATCATTA
*
25422 AAATTATT-
1 AAATCATTA
25430 AAAT-ATTA
1 AAATCATTA
*
25438 AAAACATTA
1 AAATCATTA
*
25447 CTAAATCA-TC
1 --AAATCATTA
25457 AAATCATTA
1 AAATCATTA
25466 TTAAATCATT
1 --AAATCATT
25476 TTTATGGTTA
Statistics
Matches: 146, Mismatches: 13, Indels: 50
0.70 0.06 0.24
Matches are distributed among these distances:
7 11 0.08
8 53 0.36
9 20 0.14
10 4 0.03
11 48 0.33
14 10 0.07
ACGTcount: A:0.50, C:0.13, G:0.01, T:0.36
Consensus pattern (9 bp):
AAATCATTA
Found at i:25330 original size:27 final size:27
Alignment explanation
Indices: 25300--25390 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
25290 CTAAATCATC
*
25300 AAATCATTAAATATTAAAATCATTATT
1 AAATCATTAAATATTAAAATCATTACT
* *
25327 AAATCATT-ATTA-TCAAATCATTACT
1 AAATCATTAAATATTAAAATCATTACT
25352 AAATCATTAAATATTAAAATCATTACT
1 AAATCATTAAATATTAAAATCATTACT
*
25379 AAATCATCAAAT
1 AAATCATTAAAT
25391 CGTTAAATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
25 19 0.34
26 6 0.11
27 31 0.55
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (27 bp):
AAATCATTAAATATTAAAATCATTACT
Found at i:25365 original size:52 final size:50
Alignment explanation
Indices: 25180--25385 Score: 178
Period size: 52 Copynumber: 4.2 Consensus size: 50
25170 ATATTAATAA
* ** *
25180 TAAATCATTATTATCATATCATTACTAAATCA-T--TATTATCATTATTAT
1 TAAATCATTATTAT-AAATCATTACTAAATCATTAATATTAAAATCATTAT
* * * * *
25228 TAAATAATTATTATAATGATTATTACTAAATCATTATTA-TAATGATTATTAT
1 TAAATCATTATTATAA--ATCATTACTAAATCATTAATATTAA-AATCATTAT
* *
25280 CAAATCATTA--CTAAATCA-T-C-AAATCATTAAATATTAAAATCATTAT
1 TAAATCATTATTATAAATCATTACTAAATCATT-AATATTAAAATCATTAT
*
25326 TAAATCATTATTATCAAATCATTACTAAATCATTAAATATTAAAATCATTAC
1 TAAATCATTATTAT-AAATCATTACTAAATCATT-AATATTAAAATCATTAT
25378 TAAATCAT
1 TAAATCAT
25386 CAAATCGTTA
Statistics
Matches: 129, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
45 8 0.06
46 20 0.16
47 5 0.04
48 17 0.13
49 20 0.16
50 5 0.04
51 3 0.02
52 51 0.40
ACGTcount: A:0.46, C:0.11, G:0.01, T:0.42
Consensus pattern (50 bp):
TAAATCATTATTATAAATCATTACTAAATCATTAATATTAAAATCATTAT
Found at i:25384 original size:87 final size:86
Alignment explanation
Indices: 25182--25420 Score: 279
Period size: 87 Copynumber: 2.8 Consensus size: 86
25172 ATTAATAATA
* * * * * * *
25182 AATCATTATTATCATATCATTACTAAATCATTATTATCATT-ATTATT-AAATAATTATTATAAT
1 AATCATTAATATAAAATCATTACTAAATCATCA-AATCATTAAATATTAAAATCATTATTA-AAT
* *
25245 GATTATTACTAAATCATTATTAT
64 CATTATTACTAAATCATTACTAT
* * *
25268 AATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATTATTAAATCA
1 AATCATTAATATAAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATTATTAAATCA
25333 TTATTA-TCAAATCATTACTA-
66 TTATTACT-AAATCATTACTAT
* *
25353 AATCATTAAATATTAAAATCATTACTAAATCATCAAATCGTTAAATATTAAAATCATTACTAAAT
1 AATCATT-AATA-TAAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATTATTAAAT
25418 CAT
64 CAT
25421 CAAATTATTA
Statistics
Matches: 135, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
85 13 0.10
86 59 0.44
87 63 0.47
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (86 bp):
AATCATTAATATAAAATCATTACTAAATCATCAAATCATTAAATATTAAAATCATTATTAAATCA
TTATTACTAAATCATTACTAT
Found at i:25397 original size:35 final size:35
Alignment explanation
Indices: 25352--25465 Score: 201
Period size: 35 Copynumber: 3.3 Consensus size: 35
25342 AATCATTACT
25352 AAATCATTAAATATTAAAATCATTACTAAATCATC
1 AAATCATTAAATATTAAAATCATTACTAAATCATC
*
25387 AAATCGTTAAATATTAAAATCATTACTAAATCATC
1 AAATCATTAAATATTAAAATCATTACTAAATCATC
* *
25422 AAATTATTAAATATTAAAAACATTACTAAATCATC
1 AAATCATTAAATATTAAAATCATTACTAAATCATC
25457 AAATCATTA
1 AAATCATTA
25466 TTAAATCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 74 1.00
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
AAATCATTAAATATTAAAATCATTACTAAATCATC
Found at i:25751 original size:46 final size:48
Alignment explanation
Indices: 25678--25799 Score: 171
Period size: 46 Copynumber: 2.6 Consensus size: 48
25668 ATTACTAATA
*
25678 ATTACTAAATCATTACTATCAAATCATTAAATATT-ATAATAATTTCATT
1 ATTACT-AATCATTA-TACCAAATCATTAAATATTAATAATAATTTCATT
25727 ATTA-TAATCATTATACCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTATACCAAATCATTAAATATTAATAATAATTTCATT
* *
25774 ATTACTAAT-AAT-TACTAAATCATTAA
1 ATTACTAATCATTATACCAAATCATTAA
25800 TATCAAATCA
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
46 31 0.46
47 28 0.41
48 5 0.07
49 4 0.06
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (48 bp):
ATTACTAATCATTATACCAAATCATTAAATATTAATAATAATTTCATT
Found at i:25775 original size:106 final size:108
Alignment explanation
Indices: 25657--25906 Score: 425
Period size: 106 Copynumber: 2.3 Consensus size: 108
25647 TTAAATCATT
* *
25657 ATAATTTTATTATTACTAATAATTACTAAATCATTACTATCAAATCATTAAATATTA-TAATAAT
1 ATAATTTCATTATTACTAATAATTACTAAATCATTAATATCAAATCATTAAATATTAGTAATAAT
25721 TTCATTATTA-TAATCATTA-TACCAAATCATTAAATATTAATA
66 TTCATTATTACTAATCATTACTACCAAATCATT-AATATTAATA
25763 ATAATTTCATTATTACTAATAATTACTAAATCATTAATATCAAATCATTAAATATTAGTAATAAT
1 ATAATTTCATTATTACTAATAATTACTAAATCATTAATATCAAATCATTAAATATTAGTAATAAT
*
25828 TTTATTATTACTAATCATTACTACCAAATCATTAATATTAATA
66 TTCATTATTACTAATCATTACTACCAAATCATTAATATTAATA
* *
25871 ATAATTTCATTATTACTAATCATTACTAAATAATTA
1 ATAATTTCATTATTACTAATAATTACTAAATCATTA
25907 TTATAATTTT
Statistics
Matches: 136, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
106 55 0.40
107 16 0.12
108 53 0.39
109 12 0.09
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (108 bp):
ATAATTTCATTATTACTAATAATTACTAAATCATTAATATCAAATCATTAAATATTAGTAATAAT
TTCATTATTACTAATCATTACTACCAAATCATTAATATTAATA
Found at i:25807 original size:60 final size:61
Alignment explanation
Indices: 25732--25865 Score: 200
Period size: 60 Copynumber: 2.2 Consensus size: 61
25722 TCATTATTAT
*
25732 AATCATT-ATACCAAATCATTAAATATTAATAATAATTTCATTATTACTAATAATTACT-A
1 AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATAATTACTCA
* * *
25791 AATCATTAATATCAAATCATTAAATATTAGTAATAATTTTATTATTACTAATCATTACTACCA
1 AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATAATTACT--CA
25854 AATCATTAATAT
1 AATCATTAATAT
25866 TAATAATAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
59 7 0.10
60 47 0.70
63 13 0.19
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (61 bp):
AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATAATTACTCA
Found at i:25883 original size:48 final size:49
Alignment explanation
Indices: 25784--25898 Score: 178
Period size: 48 Copynumber: 2.3 Consensus size: 49
25774 ATTACTAATA
* * * *
25784 ATTACTAAATCATTAATATCAAATCATTAAATATTAGTAATAATTTTATT
1 ATTACT-AATCATTACTACCAAATCATTAAATATTAATAATAATTTCATT
25834 ATTACTAATCATTACTACCAAATCATT-AATATTAATAATAATTTCATT
1 ATTACTAATCATTACTACCAAATCATTAAATATTAATAATAATTTCATT
25882 ATTACTAATCATTACTA
1 ATTACTAATCATTACTA
25899 AATAATTATT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
48 36 0.59
49 19 0.31
50 6 0.10
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (49 bp):
ATTACTAATCATTACTACCAAATCATTAAATATTAATAATAATTTCATT
Found at i:27640 original size:45 final size:46
Alignment explanation
Indices: 27591--27682 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
27581 AAACATCGAA
* *
27591 TGCATTTTATGCATCAATGCAC-ATACCATGCATCGATGCACTCAG
1 TGCATTTGATGCATCAATGCACAAGACCATGCATCGATGCACTCAG
* *
27636 TGCATTTGATGTATCGATGCACAAGACCATGCATCGATGCACTCAG
1 TGCATTTGATGCATCAATGCACAAGACCATGCATCGATGCACTCAG
27682 T
1 T
27683 CTTTTTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 19 0.45
46 23 0.55
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCATTTGATGCATCAATGCACAAGACCATGCATCGATGCACTCAG
Found at i:35379 original size:13 final size:13
Alignment explanation
Indices: 35357--35386 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
35347 ACTAAACACC
35357 TTTC-ACATACCT
1 TTTCAACATACCT
35369 TTTCAACATACCT
1 TTTCAACATACCT
35382 TTTCA
1 TTTCA
35387 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:38152 original size:18 final size:19
Alignment explanation
Indices: 38119--38154 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
38109 GTGCTTCCAA
*
38119 CTTTTCTTTCTTTTCTTTG
1 CTTTTCTTTCTCTTCTTTG
38138 CTTTT-TTTCTCTTCTTT
1 CTTTTCTTTCTCTTCTTT
38155 TTGAGTGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.75
Consensus pattern (19 bp):
CTTTTCTTTCTCTTCTTTG
Found at i:42415 original size:21 final size:21
Alignment explanation
Indices: 42389--42439 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
42379 CCCCGGGAGC
42389 TAGCTCTTCACGAGCTGCTCT
1 TAGCTCTTCACGAGCTGCTCT
42410 TAGCTCTTCACGAGCTGCTCT
1 TAGCTCTTCACGAGCTGCTCT
42431 TAGCTCTTC
1 TAGCTCTTC
42440 TCATGCTCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.14, C:0.33, G:0.18, T:0.35
Consensus pattern (21 bp):
TAGCTCTTCACGAGCTGCTCT
Found at i:43677 original size:45 final size:46
Alignment explanation
Indices: 43628--43716 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
43618 ACATCGAATT
* *
43628 CATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTCAGTG
1 CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTG
43673 CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAG
1 CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAG
43717 GATTTTTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 19 0.46
46 22 0.54
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (46 bp):
CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTG
Found at i:48182 original size:7 final size:7
Alignment explanation
Indices: 48172--48197 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
48162 GTAAAAAAAC
48172 AAAAAGA
1 AAAAAGA
48179 AAAAAGA
1 AAAAAGA
48186 AAAAAGA
1 AAAAAGA
48193 AAAAA
1 AAAAA
48198 TGAAGTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:48833 original size:20 final size:20
Alignment explanation
Indices: 48804--48842 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48794 AAAGCTCATA
*
48804 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
48824 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
48843 GTGGTGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:52014 original size:21 final size:20
Alignment explanation
Indices: 51992--52032 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
51982 CTGGGTTGAA
51992 TTAAAAAAGGAAAAAATCAAAT
1 TTAAAAAA--AAAAAATCAAAT
*
52014 TTAAAGAAAAAAAATCAAA
1 TTAAAAAAAAAAAATCAAA
52033 AGATAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
22 7 0.39
ACGTcount: A:0.71, C:0.05, G:0.07, T:0.17
Consensus pattern (20 bp):
TTAAAAAAAAAAAATCAAAT
Found at i:52039 original size:21 final size:20
Alignment explanation
Indices: 52002--52046 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
51992 TTAAAAAAGG
**
52002 AAAAAATCAAATTTAAAGAA
1 AAAAAATCAAAGATAAAGAA
52022 AAAAAATCAAAAGATAAAGATA
1 AAAAAATC-AAAGATAAAGA-A
52044 AAA
1 AAA
52047 TAATAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
21 9 0.43
22 4 0.19
ACGTcount: A:0.73, C:0.04, G:0.07, T:0.16
Consensus pattern (20 bp):
AAAAAATCAAAGATAAAGAA
Found at i:52075 original size:30 final size:32
Alignment explanation
Indices: 52021--52081 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 32
52011 AATTTAAAGA
*
52021 AAAAAAATCAAAAGATAAAGATAAAATAATAG
1 AAAAAAATCAAAAAATAAAGATAAAATAATAG
*
52053 AAAAAAAT-AAAAAATAAA-ATAAATTAATA
1 AAAAAAATCAAAAAATAAAGATAAAATAATA
52082 AAGAAATGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 10 0.37
31 9 0.33
32 8 0.30
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (32 bp):
AAAAAAATCAAAAAATAAAGATAAAATAATAG
Found at i:52087 original size:32 final size:34
Alignment explanation
Indices: 52015--52087 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 34
52005 AAATCAAATT
*
52015 TAAAGAAAAAAAATCAAAAGATAAAGATAAAATAA
1 TAAAG-AAAAAAATCAAAAAATAAAGATAAAATAA
*
52050 T--AGAAAAAAAT-AAAAAATAAA-ATAAATTAA
1 TAAAGAAAAAAATCAAAAAATAAAGATAAAATAA
52080 TAAAGAAA
1 TAAAGAAA
52088 TGGTGAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
30 9 0.26
31 9 0.26
32 13 0.38
33 2 0.06
35 1 0.03
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.16
Consensus pattern (34 bp):
TAAAGAAAAAAATCAAAAAATAAAGATAAAATAA
Found at i:52394 original size:16 final size:16
Alignment explanation
Indices: 52348--52405 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
52338 TAACCCGACA
*
52348 TGAAAGCAACTTGAAC
1 TGAAAGTAACTTGAAC
* * *
52364 -AAAAATTACTCTGAAC
1 TGAAAGTAACT-TGAAC
52380 TGAAAGTAACTTGAAC
1 TGAAAGTAACTTGAAC
*
52396 CGAAAGTAAC
1 TGAAAGTAAC
52406 CCAAATCGAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 6 0.19
16 19 0.59
17 7 0.22
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.21
Consensus pattern (16 bp):
TGAAAGTAACTTGAAC
Found at i:60936 original size:61 final size:61
Alignment explanation
Indices: 60841--60966 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 61
60831 GGCCTAGTGA
* ** * * *
60841 TAAGACCTTATAGACCCTATAAAACTCCCATAGGGTTTCCCATTTTCTTTGTGCATTGTGG
1 TAAGACCATATAGACCCTATAAAACTCCCATAGGGTGGCCCATTTGCATTGTGCACTGTGG
* * *
60902 TAAGACCATAT-GAACCCTTTAACACTCCCATAGGGTGGCTCATTTGCATTGTGCACTGTGG
1 TAAGACCATATAG-ACCCTATAAAACTCCCATAGGGTGGCCCATTTGCATTGTGCACTGTGG
60963 TAAG
1 TAAG
60967 TCCTTATGGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (61 bp):
TAAGACCATATAGACCCTATAAAACTCCCATAGGGTGGCCCATTTGCATTGTGCACTGTGG
Found at i:66956 original size:2 final size:2
Alignment explanation
Indices: 66949--66991 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
66939 GTGTCGACAG
*
66949 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66990 AT
1 AT
66992 TTTTTTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:68585 original size:20 final size:20
Alignment explanation
Indices: 68560--68611 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
68550 CAATGTTGGT
68560 AGTATCGATACTACCTTATG
1 AGTATCGATACTACCTTATG
68580 AGTATCGATACTACCTTATG
1 AGTATCGATACTACCTTATG
68600 AGTATCGATACT
1 AGTATCGATACT
68612 TCCGTACTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (20 bp):
AGTATCGATACTACCTTATG
Found at i:68832 original size:107 final size:106
Alignment explanation
Indices: 68646--68913 Score: 376
Period size: 107 Copynumber: 2.5 Consensus size: 106
68636 CGATACCAAA
* * * * *
68646 GGTAGTATCGAGACTACCTTTTGAGTATCAATACTTCCATTGCCTTTGGTATTGGTACTTCTTTT
1 GGTAGTATCGATACTACCTTGTGAGTATCAATACTTCCA-TACCTTTGGTATCGGTACTTCCTTT
* * *
68711 GGTAACGGTACCATTTTTGCGTTATGGAATTTGAGCAATGTT
65 GGTAACGATACCATTTTTGCATTATAGAATTTGAGCAATGTT
* *
68753 GGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCTATACATTTGGTATCGGTA-TTCCTTT
1 GGTAGTATCGATACTACCTTGTGAGTATCAATACTTCC-ATACCTTTGGTATCGGTACTTCCTTT
* *
68817 GGATATCGATACCATTTTTGCATTCTAGAATTTGAGCAATGTT
65 GG-TAACGATACCATTTTTGCATTATAGAATTTGAGCAATGTT
*
68860 GGTAGTATCGATACTACCTTGTGAGTATCAAAACTTCCGATACCTTTGGTATCG
1 GGTAGTATCGATACTACCTTGTGAGTATCAATACTTCC-ATACCTTTGGTATCG
68914 ATACCATATG
Statistics
Matches: 143, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
106 8 0.06
107 134 0.94
108 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (106 bp):
GGTAGTATCGATACTACCTTGTGAGTATCAATACTTCCATACCTTTGGTATCGGTACTTCCTTTG
GTAACGATACCATTTTTGCATTATAGAATTTGAGCAATGTT
Done.