genome.fa.s7515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007515.1 Hibiscus syriacus cultivar Beakdansim tig00020905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104589

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709--1770	23	2.7	22	75	7	61	40	0	1	58	1.08
1786--1833	21	2.3	21	86	10	64	52	4	2	41	1.32
7914--7967	23	2.3	23	93	0	90	24	18	12	44	1.85
7914--7974	23	2.7	23	80	14	81	21	16	14	47	1.82
22053--22208	31	5.0	31	91	1	233	35	22	21	20	1.96
22384--22430	23	2.0	24	91	4	78	34	21	0	44	1.52
23035--23079	21	2.1	21	87	0	63	15	24	28	31	1.96
26119--26274	31	5.0	31	91	1	233	35	22	21	20	1.96
26452--26498	23	2.0	24	91	4	78	34	21	0	44	1.52
27100--27144	21	2.1	21	87	0	63	15	24	28	31	1.96
27860--27910	16	3.1	17	78	13	54	39	0	0	60	0.97
28020--28059	21	1.9	21	85	10	55	40	27	12	20	1.88
28294--28335	17	2.5	17	81	14	52	38	0	0	61	0.96
29079--29117	2	19.5	2	100	0	78	48	0	0	51	1.00
29143--29623	74	6.7	72	83	9	499	44	4	6	44	1.50
29142--29623	36	13.4	36	81	12	482	45	4	6	43	1.49
29435--29624	33	5.6	32	74	12	84	44	3	6	45	1.46
29620--29697	40	2.0	40	85	5	106	24	0	5	70	1.07
30750--30926	29	6.2	27	70	25	98	19	5	1	72	1.13
30763--30829	34	1.9	34	84	6	89	20	5	2	70	1.22
30815--30903	33	2.7	31	80	16	90	19	6	1	73	1.12
30844--30984	4	35.0	4	71	19	82	21	2	2	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30844--30983	57	2.5	59	79	16	170	20	2	2	73	1.09
32074--32113	20	2.0	20	85	0	53	20	35	25	20	1.96
32460--32529	34	2.1	32	86	5	95	31	14	28	25	1.95
38512--38804	21	14.0	21	75	13	164	22	19	21	36	1.95
38558--38797	42	5.7	42	80	9	210	21	18	21	38	1.93
38518--38755	63	3.8	63	78	8	227	21	19	21	37	1.94
38527--38797	105	2.6	105	93	1	461	21	19	21	37	1.94
38686--38804	42	2.8	42	92	0	211	21	19	21	36	1.95
39496--39741	42	5.9	42	85	6	286	37	18	21	21	1.94
39544--39772	21	10.8	21	83	10	261	38	18	21	21	1.93
39544--39781	63	3.8	64	85	8	303	38	18	21	21	1.93
40662--40697	5	7.2	5	93	0	63	80	2	0	16	0.83
40657--40697	15	2.7	15	88	3	64	78	4	0	17	0.93
42498--42565	3	22.0	3	85	11	93	63	0	2	33	1.10
42776--43258	131	3.7	130	78	7	388	26	18	29	25	1.98
43364--43501	68	2.0	69	81	9	165	41	7	19	31	1.80
43432--43472	21	2.1	19	86	9	55	56	2	17	24	1.53
43628--43723	38	2.7	36	80	15	101	39	12	15	32	1.85
43649--43724	39	2.0	39	89	2	118	36	10	15	36	1.82
44093--44132	16	2.5	16	87	0	53	22	0	25	52	1.47
45135--45161	2	13.5	2	100	0	54	48	0	0	51	1.00
50097--50156	23	2.6	23	89	0	84	18	23	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50096--50164	23	3.0	23	84	0	75	18	21	26	33	1.97
53077--53112	2	17.5	2	94	5	63	50	0	2	47	1.15
58703--58733	5	6.2	5	92	0	53	80	3	0	16	0.83
60561--60659	3	33.0	3	91	4	164	64	0	2	33	1.05
67162--67218	27	2.1	27	86	0	78	29	29	19	21	1.97
67611--67691	27	2.9	27	74	7	81	18	6	39	35	1.76
76141--76202	23	2.9	21	85	7	81	20	35	25	17	1.95
76184--76223	21	1.9	21	89	0	62	25	40	25	10	1.86
79612--79654	17	2.5	17	88	7	61	46	9	16	27	1.77
80366--80403	20	1.9	20	88	0	58	34	21	7	36	1.82
84831--84888	21	2.9	19	80	12	64	41	12	13	32	1.82
85229--85289	31	1.9	32	93	3	106	49	3	1	45	1.28
86364--86474	41	3.0	39	70	23	114	15	9	20	54	1.67
87231--87269	20	2.0	20	94	0	69	33	7	25	33	1.84
89140--89231	23	4.0	23	81	0	103	25	11	19	43	1.85
89142--89231	46	2.0	46	86	0	126	25	11	18	44	1.83
89470--89510	16	2.5	17	88	4	57	68	21	2	7	1.26
91312--91357	15	3.5	15	67	32	50	34	23	21	19	1.96
91265--91370	24	4.4	24	92	2	160	31	24	22	21	1.98
99408--99459	13	4.1	13	71	14	54	40	0	1	57	1.10
99419--99561	78	1.9	75	85	9	202	38	3	7	50	1.48
99987--100123	60	2.3	61	75	12	147	29	20	5	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100268--100397	60	2.2	60	85	2	172	40	4	21	33	1.74
101500--101567	15	4.5	15	79	0	73	10	14	61	13	1.56
104460--104496	17	2.1	18	90	5	58	40	10	2	45	1.53

Tables:   1

The End!