Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007516.1 Hibiscus syriacus cultivar Beakdansim tig00020920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111407

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5279--5322
21
2.1
21
91
0
70
22
25
25
27
2.00
6024--6133
31
3.6
31
93
1
186
42
22
16
18
1.88
7156--7211
3
19.0
3
79
3
60
62
1
3
32
1.23
7394--7955
132
4.2
134
77
6
515
31
14
22
31
1.94
7394--7937
265
2.0
267
79
6
588
31
15
21
31
1.94
9197--9270
13
5.7
13
79
9
71
5
13
1
79
0.96
9213--9270
18
3.2
17
77
15
62
5
13
0
81
0.86
9212--9253
12
3.4
13
87
9
52
2
14
0
83
0.75
31036--31405
132
2.8
132
82
2
431
38
16
11
32
1.85
32006--32073
29
2.4
28
83
9
84
61
5
8
23
1.47
37048--37090
3
13.7
3
85
9
59
34
0
0
65
0.93
38492--38549
29
2.0
29
83
6
73
20
6
13
58
1.58
39052--39312
131
2.0
131
81
3
310
31
11
16
40
1.84
42375--42415
21
2.0
21
85
0
55
24
2
29
43
1.67
45564--45720
27
5.9
27
90
1
244
29
21
25
23
1.99
50293--50334
2
21.0
2
100
0
84
50
0
0
50
1.00
53027--53074
2
24.0
2
100
0
96
50
0
0
50
1.00
56298--56372
27
2.8
27
97
0
141
45
24
16
14
1.84
58776--58836
20
3.0
20
85
0
86
13
26
37
22
1.91
61552--61611
23
2.6
23
86
0
84
16
23
28
31
1.96
66911--66956
23
2.0
23
91
0
74
17
23
26
32
1.97
68406--68435
15
2.0
15
100
0
60
26
20
13
40
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68849--68907
25
2.4
25
97
0
109
42
3
10
44
1.55
69577--69886
41
7.6
41
67
7
164
31
18
15
34
1.92
69734--69903
83
2.0
83
79
5
182
31
17
13
37
1.89
80978--81010
17
1.9
17
93
0
57
6
12
9
72
1.26
81621--81665
19
2.4
19
92
3
74
11
13
8
66
1.44
85054--85621
164
3.5
164
92
0
929
29
26
19
24
1.98
85616--86549
106
9.0
106
86
5
1268
34
26
17
21
1.96
85616--86505
200
4.3
200
92
2
1219
34
26
17
21
1.96
85616--86549
306
3.0
306
85
6
1176
34
26
17
21
1.96
87798--87842
21
2.1
21
87
0
63
31
28
24
15
1.96
89378--89444
22
3.0
22
97
0
125
19
25
26
28
1.99
89635--89668
16
2.1
17
88
5
52
32
0
23
44
1.54
92703--92747
21
2.1
21
87
0
63
31
28
24
15
1.96
94293--94359
22
3.0
22
100
0
134
19
26
26
26
1.99
94550--94583
16
2.1
17
88
5
52
32
0
23
44
1.54
101204--101267
3
22.0
3
84
12
89
31
1
0
67
1.00
101403--101520
25
4.8
25
96
1
220
33
20
13
32
1.91
103104--103137
15
2.2
16
89
5
52
17
0
5
76
0.98

Tables:   1

The End!